The structure and dynamics of tissue cultures depend strongly on the physical and chemical properties of the underlying substrate. Inspired by previous advances in the context of inorganic materials, the use of patterned culture surfaces has been proposed as an effective way to induce space-dependent properties in cell tissues. However, cells move and diffuse and the transduction of external stimuli to biological signals is not instantaneous. Here, we show that the fidelity of patterns depends on the relation between the diffusion ($τ_D$) and adaptation ($τ$) times. Numerical results for the self-propelled Voronoi model reveal that the fidelity decreases with $τ/τ_D$, a result that is reproduced by a continuum reaction-diffusion model. We derive a minimum length scale for the patterns that depends on $τ/τ_D$ and can be much larger than the cell size.
Nematic liquid crystals confined to geometrically as well as chemically patterned substrate on one end and a flat substrate with strong anchoring on the other is studied using non-Boltzmann Monte Carlo methods. We observe significant deviations from the continuum-based predictions of the phase diagram which was studied as a function of tilt angle at the top substrate and thickness of the cell. Onset of biaxiality at larger tilt angles at the top substrate is observed. A phase shift introduced between the geometrical and chemical pattern has significant effect on the director structures in the …
A theoretical analysis is presented of a nematic liquid crystal confined between substrates pat- terned with squares that promote vertical and planar alignment. Two approaches are used to eluci- date the behavior across a wide range of length scales: Monte Carlo simulation of hard particles and Frank-Oseen continuum theory. Both approaches predict bistable degenerate azimuthal alignment in the bulk along the edges of the squares; the continuum calculation additionally reveals the possi- bility of an anchoring transition to diagonal alignment if the polar anchoring energy associated with the pa…
We investigate numerically the dynamics of unstable gravity driven three-dimensional thin liquid films on hydrophilic-hydrophobic patterned substrates of longitudinal stripes and checkerboard arrangements. The thin film can be guided preferentially on hydrophilic longitudinal stripes, while fingers develop on adjacent hydrophobic stripes if their width is large enough. On checkerboard patterns, the film fingering occurs on hydrophobic domains, while lateral spreading is favoured on hydrophilic domains, providing a mechanism to tune the growth rate of the film. By means of kinematical arguments…
We employ kinetic Monte Carlo (KMC) simulations and a thin-film continuum model to comparatively study the transverse (i.e., Plateau-Rayleigh) instability of ridges formed by molecules on pre-patterned substrates. It is demonstrated that the evolution of the occurring instability qualitatively agrees between the two models for a single ridge as well as for two weakly interacting ridges. In particular, it is shown for both models that the instability occurs on well defined length and time scales which are, for the KMC model, significantly larger than the intrinsic scales of thermodynamic fluctu…
We study the normal and lateral effective critical Casimir forces acting on a spherical colloid immersed in a critical binary solvent and close to a chemically structured substrate with alternating adsorption preference. We calculate the universal scaling function for the corresponding potential and compare our results with recent experimental data [Soyka F., Zvyagolskaya O., Hertlein C., Helden L., and Bechinger C., Phys. Rev. Lett., 101, 208301 (2008)]. The experimental potentials are properly captured by our predictions only by accounting for geometrical details of the substrate pattern for…
We study the percolation properties for a system of functionalized colloids on patterned substrates via Monte Carlo simulations. The colloidal particles are modeled as hard disks with three equally-distributed attractive patches on their perimeter. We describe the patterns on the substrate as circular potential wells of radius $R_p$ arranged in a regular square or hexagonal lattice. We find a nonmonotonic behavior of the percolation threshold (packing fraction) as a function of $R_p$. For attractive wells, the percolation threshold is higher than the one for clean (non-patterned) substrates if…
This paper is the second in a two-part exposition on {\it surface-directed spinodal decomposition} (SDSD), i.e., the interplay of kinetics of wetting and phase separation at a surface which is wetted by one of the components of a binary mixture. In our first paper [P. Das, P.K. Jaiswal and S. Puri, Phys. Rev. E {\bf 102}, 012803 (2020)], we studied SDSD on chemically heterogeneous and physically flat substrates. In this paper, we study SDSD on a chemically homogeneous but morphologically patterned substrate. Such substrates arise in a vast variety of technological applications. Our goal is to …
We study the behavior of negatively charged colloids with two positively charged polar caps close to a planar patterned surface. The competition between the different anisotropic components of the particle-particle interaction patterns is able by itself to give rise to a rich assembly scenario: colloids with charged surface patterns form different crystalline domains when adsorbed to a homogeneously charged substrate. Here we consider substrates composed of alternating (negative/neutral, positive/neutral and positive/negative) parallel stripes and, by means of Monte Carlo simulations, we inves…
{\it Surface-directed spinodal decomposition} (SDSD) is the kinetic interplay of phase separation and wetting at a surface. This process is of great scientific and technological importance. In this paper, we report results from a numerical study of SDSD on a chemically patterned substrate. We consider simple surface patterns for our simulations, but most of the results apply for arbitrary patterns. In layers near the surface, we observe a dynamical crossover from a {\it surface-registry regime} to a {\it phase-separation regime}. We study this crossover using layer-wise correlation functions a…
Colloids immersed in a critical or near-critical binary liquid mixture and close to a chemically patterned substrate are subject to normal and lateral critical Casimir forces of dominating strength. For a single colloid we calculate these attractive or repulsive forces and the corresponding critical Casimir potentials within mean-field theory. Within this approach we also discuss the quality of the Derjaguin approximation and apply it to Monte Carlo simulation data available for the system under study. We find that the range of validity of the Derjaguin approximation is rather large and that i…
We present a computer simulation study on crystal nucleation and growth in supersaturated suspensions of mono-disperse hard spheres induced by a triangular lattice substrate. The main result is that compressed substrates are wet by the crystalline phase (the crystalline phase directly appears without any induction time), while for stretched substrates we observe heterogeneous nucleation. The shapes of the nucleated crystallites fluctuate strongly. In the case of homogeneous nucleation amorphous precursors have been observed (Phys. Rev. Lett. {\bf 105}(2):025701 (2010)). For heterogeneous nucle…
We study block copolymers (BCP) on patterned substrates, where the top polymer film surface is not constrained but is a free interface that adapts its shape self-consistently. In particular, we investigate the combined effect of the free interface undulations with the wetting of the BCP film as induced by nano-patterned substrates. For a finite volume of BCP material, we find equilibrium droplets composed of coexisting perpendicular and parallel lamellar domains. The self-assembly of BCP on topographic patterned substrates was also investigated and it was found that the free interface induces …
Recent experiments have demonstrated a fluctuation-induced lateral trapping of spherical colloidal particles immersed in a binary liquid mixture near its critical demixing point and exposed to chemically patterned substrates. Inspired by these experiments, we study this kind of effective interaction, known as the critical Casimir effect, for elongated colloids of cylindrical shape. This adds orientational degrees of freedom. When the colloidal particles are close to a chemically structured substrate, a critical Casimir torque acting on the colloids emerges. We calculate this torque on the basi…
We explore the crystallization in a colloidal monolayer on a structured template starting from a few-particle nucleus. The competition between the substrate structure and that of the growing crystal induces a new crystal growth scenario. Unlike with the crystal growth in the bulk where a well-defined and connected crystal-fluid interface grows into the fluid, we identify a mechanism where a "compatibility wave" of the prescribed nucleus with the underlying substrate structure dictates the growth direction and efficiency. The growth process is strongly anisotropic and proceeds via transient isl…
The collective behavior of self-propelled particles (SPPs) under the combined effects of a circularly patterned substrate and circular confinement is investigated through coarse-grained molecular dynamics simulations of polarized and disjoint ring polymers. The study is performed over a wide range of values of the SPPs packing fraction $\barϕ$, motility force $F_D$, and area fraction of the patterned region. At low packing fractions, the SPPs are excluded from the system's center and exhibit a vortical motion that is dominated by the substrate at intermediate values of $F_D$. This exclusion zo…
A novel bilayer is introduced, consisting of a stiff film adhered to a soft substrate with patterned holes beneath the film and substrate interface. To uncover the transition of surface patterns, two dimensional plane strain simulations are performed on the defected bilayer subjected to uniaxial compression. Although the substrate is considered as the linear elastic material, the presence of defects can directly trigger the formation of locally ridged and then folding configurations from flat surface with a relatively small compressive strain. It is followed by the coexisting phases of folds a…
We study the transport of paramagnetic colloidal particles on a patterned magnetic substrate with kinetic Monte Carlo and Brownian dynamics computer simulations. The planar substrate is decorated with point dipoles in either parallel or zigzag stripe arrangements and exposed to an additional external magnetic field that oscillates in time. For the case of parallel stripes we find that the magnitude and direction of the particle current is controlled by the tilt angle of the external magnetic field. The effect is reliably obtained in a wide range of ratios between temperature and magnetic perme…
Among the various kinds of effective forces in soft matter, the spatial range and the direction of the so-called critical Casimir force - which is generated by the enhanced thermal fluctuations close to a continuous phase transition - can be controlled and reversibly modified to an uncommonly large extent. In particular, minute temperature changes of the fluid solvent, which provides the near-critical thermal fluctuations, lead to a significant change of the range and strength of the effective interaction among the solute particles. This feature allows one to control, e.g., the aggregation of …
Different contact regimes between a spherical lens and a periodically patterned substrate are observed, when they are pressed against each other. Top contact occurs when only the highest substrate sections touch the lens, whereas mixed contact implies that both the highest and the lowest substrate sections come into contact with the lens. In this paper, we study how the pattern density of the substrate, along with its physical properties and those of the lens, determine the transition from top contact to mixed contact. Experiments and numerical simulations had been performed, as complementary …
We investigate a continuum mechanical model for an adherent cell on two dimensional adhesive micropatterned substrates. The cell is modeled as an isotropic and homogeneous elastic material subject to uniform internal contractile stresses. The build-up of tension from cortical actin bundles at the cell periphery is incorporated by introducing an energy cost for bending of the cell boundary, resulting to a resistance to changes in local curvature. Integrin-based adhesions are modeled as harmonic springs, that pin the cell to adhesive patches of a predefined geometry. Using Monte Carlo simulation…
Experiments on supported lipid bilayers featuring liquid ordered/disordered domains have shown that the spatial arrangement of the lipid domains and their chemical composition are strongly affected by the curvature of the substrate. Furthermore, theoretical predictions suggest that both these effects are intimately related with the closed topology of the bilayer. In this work, we test this hypothesis by fabricating supported membranes consisting of colloidal particles of various shapes lying on a flat substrate. A single lipid bilayer coats both colloids and substrate, allowing local lipid exc…
Patterned Substrates Unlock Self-Electrophoretic Phenomenon in Active Janus Microswimmers
Istituto di BioRobotica-Scuola Superiore Sant’Anna（机器人研究所圣安娜高等学院）；Wageningen University & Research（瓦赫宁根大学与研究）；Center for Materials Interfaces, Electron Crystallography, Italian Institute of Technology（意大利理工学院材料界面与电子晶体学中心）
A mesoscopic continuum model is employed to analyse the transport mechanisms and structure formation during the redistribution stage of deposition experiments where organic molecules are deposited on a solid substrate with periodic stripe-like wettability patterns. Transversally invariant ridges located on the more wettable stripes are identified as very important transient states and their linear stability is analysed. It is found that there exist two different instability modes that result (i) at large ridge volume in the formation of bulges that spill from the more wettable stripes onto the…
We performed extensive Monte Carlo simulations of the irreversible adsorption of polydispersed disks inside the cells of a patterned substrate. The model captures relevant features of the irreversible adsorption of spherical colloidal particles on patterned substrates. The pattern consists of (equal) square cells, where adsorption can take place, centered at the vertices of a square lattice. Two independent, dimensionless parameters are required to control the geometry of the pattern, namely, the cell size and cell-cell distance, measured in terms of the average particle diameter. However, to …
We present results showing how water drops, produced by ink-jet printing, spread on surfaces patterned with lattices of diamond or triangular posts. Considering post widths typically ~7 m and lattice spacings between 15-40 m, we observe drop shapes with 3,4 and 6-fold symmetry, depending on both the symmetry of the lattice and the shape of the posts. This is a result of the different mechanisms of interface pinning and depinning which depend on the direction of the contact line motion with respect to the post shape. Lattice Boltzmann simulations are used to describe these mechanisms in detail …
In this paper, we presented an experimental and theoretical analysis of the formation of the contact between a smooth elastomer lens and an elastomer substrate micropatterned with hexagonal arrays of cylindrical pillars. We show using a JKR model coupled with a full description of the deformation of the substrate between the pillars that the transition between the top to the full contact is obtain when the normal load is increased above a well predicted threshold. We have also shown that above the onset of full contact, the evolution of the area of full contact was obeying a simple scaling.
The understanding of sliding friction for wet, patterned surfaces from first principles is challenging. While emerging applications have sought design principles from biology, a general framework is lacking because soft interfaces experience a multiphysics coupling between solid deformation and fluid dissipation. We investigate the elastohydrodynamic sliding of >50 patterned sliding pairs comprising elastomers, thermosets, and hydrogels, and discover that texturing induces a critical transition in the macroscopic friction coefficient. This critical friction scales universally, without any fitt…
We investigate theoretically the morphology of a thin nematic film adsorbed at flat substrate patterned by stripes with alternating aligning properties, normal and tangential respectively. We construct a simple "exactly-solvable" effective interfacial model where the liquid crystal distortions are accounted for via an effective interface potential. We find that chemically patterned substrates can strongly deform the nematic-air interface. The amplitude of this substrate-induced undulations increases with decreasing average film thickness and with increasing surface pattern pitch. We find a reg…
We describe the design of micropatterned surfaces for single cell studies, based on thermoresponsive polymer brushes. We show that brushes made of poly(N-isopropylacrylamide) grafted at high surface density display excellent protein and cell anti-adhesive properties. Such brushes are readily patterned at the micron scale via deep UV photolithography. A proper choice of the adhesive pattern shapes, combined with the temperature-dependent swelling properties of PNIPAM, allow us to use the polymer brush as a microactuator which induces cell detachment when the temperature is reduced below 32degC.
Liquid droplets on patterned hydrophobic substrates are typically observed either in the Wenzel or the Cassie state. Here we show that for droplets of comparable size to the roughness scale an additional local equilibrium state exists, where the droplet is immersed in the texture, but not yet contacts the bottom grooves. Upon evaporation, a droplet in this state enters the Cassie state, leading to a qualitatively new self-cleaning mechanism. The effect is of generic character and is expected to occur in any hydrophobic capillary wetting situation where a spherical liquid reservoir is involved.
In this paper we revisit the problem of a nematic liquid crystal in contact with patterned substrates. The substrate is modelled as a periodic array of parallel infinite grooves of well-defined cross section sculpted on a chemically homogeneous substrate which favors local homeotropic anchoring of the nematic. We consider three cases: a sawtooth, a crenellated and a sinusoidal substrate. We analyse this problem within the modified Frank-Oseen formalism. We argue that, for substrate periodicities much larger than the extrapolation length, the existence of different nematic textures with distinc…
This paper reports on the frictional properties of smooth rubber substrates sliding against rigid surfaces covered with various densities of colloidal nano-particles (average diameter 77 nm). Friction experiments were carried out using a transparent Poly(dimethyl siloxane) (PDMS) rubber contacting a silica lens with silica nano-particles sintered onto its surface. Using a previously described methodology (Nguyen \textit{et al.}, \textit{J. of Adhesion} \textbf{87} (2011) 235-250 ), surface shear stress and contact-pressure distribution within the contact were determined from a measurement of t…
