Data augmentation using generative networks to identify dementia
Department of Computer Science（计算机科学系）；Sheffield Institute for Translational Neuroscience (SITraN)（谢菲尔德转化神经科学研究所（SITraN））；Department of Human Communication Sciences（人类传播科学系）；Department of Neuroscience（神经科学系）；Royal Hallamshire Hospital（皇家哈勒姆郡医院）；Academic Neurology Unit, Royal Hallamshire Hospital（皇家哈勒姆郡医院学术神经科）
Bahman Mirheidari, Yilin Pan, Daniel Blackburn, Ronan O'Malley, Traci Walker, Annalena Venneri, Markus Reuber, Heidi Christensen
Data limitation is one of the most common issues in training machine learning classifiers for medical applications. Due to ethical concerns and data privacy, the number of people that can be recruited to such experiments is generally smaller than the number of participants contributing to non-healthcare datasets. Recent research showed that generative models can be used as an effective approach for data augmentation, which can ultimately help to train more robust classifiers sparse data domains. A number of studies proved that this data augmentation technique works for image and audio data sets. In this paper, we investigate the application of a similar approach to different types of speech and audio-based features extracted from interactions recorded with our automatic dementia detection system. Using two generative models we show how the generated synthesized samples can improve the performance of a DNN based classifier. The variational autoencoder increased the F-score of a four-way classifier distinguishing the typical patient groups seen in memory clinics from 58% to around 74%, a 16% improvement
University of Cambridge（剑桥大学）；Shanghai General Hospital, Shanghai Jiao Tong University（上海交通大学附属第一人民医院）；University of Bath（巴斯大学）
Alzheimer's disease (AD) is the most common age-related dementia. It remains a challenge to identify the individuals at risk of dementia for precise management. Brain MRI offers a noninvasive biomarker to detect brain aging. Previous evidence shows that the brain structural change detected by diffusion MRI is associated with dementia. Mounting studies has conceptualised the brain as a complex network, which has shown the utility of this approach in characterising various neurological and psychiatric disorders. Therefore, the structural connectivity shows promise in dementia classification. The…
Dementia is a growing problem as our society ages, and detection methods are often invasive and expensive. Recent deep-learning techniques can offer a faster diagnosis and have shown promising results. However, they require large amounts of labelled data which is not easily available for the task of dementia detection. One effective solution to sparse data problems is data augmentation, though the exact methods need to be selected carefully. To date, there has been no empirical study of data augmentation on Alzheimer's disease (AD) datasets for NLP and speech processing. In this work, we inves…
TTIDA: Controllable Generative Data Augmentation via Text-to-Text and Text-to-Image Models
University of Hong Kong（香港大学）；University College London（伦敦大学学院）；University of Alberta（阿尔伯塔大学）；University of North Carolina at Chapel Hill（北卡罗来纳大学教堂山分校）；Zhejiang University（浙江大学）
Harrisburg University of Science and Technology（哈里斯堡科技大学）
Medical image datasets are usually imbalanced, due to the high costs of obtaining the data and time-consuming annotations. Training deep neural network models on such datasets to accurately classify the medical condition does not yield desired results and often over-fits the data on majority class samples. In order to address this issue, data augmentation is often performed on training data by position augmentation techniques such as scaling, cropping, flipping, padding, rotation, translation, affine transformation, and color augmentation techniques such as brightness, contrast, saturation, an…
Data sparsity is one of the key challenges associated with model development in Natural Language Understanding (NLU) for conversational agents. The challenge is made more complex by the demand for high quality annotated utterances commonly required for supervised learning, usually resulting in weeks of manual labor and high cost. In this paper, we present our results on boosting NLU model performance through training data augmentation using a sequential generative adversarial network (GAN). We explore data generation in the context of two tasks, the bootstrapping of a new language and the hand…
Institute of Medical Science, University of Toronto（多伦多大学医学科学研究所）；The Hospital for Sick Children（病童医院）；University Health Network（大学健康网络）；Department of Mechanical and Industrial Engineering, University of Toronto（多伦多大学机械与工业工程系）
Successful training of convolutional neural networks (CNNs) requires a substantial amount of data. With small datasets networks generalize poorly. Data Augmentation techniques improve the generalizability of neural networks by using existing training data more effectively. Standard data augmentation methods, however, produce limited plausible alternative data. Generative Adversarial Networks (GANs) have been utilized to generate new data and improve the performance of CNNs. Nevertheless, data augmentation techniques for training GANs are under-explored compared to CNNs. In this work, we propos…
In this paper, we present a crash frequency data augmentation method based on Conditional Generative Adversarial Networks to improve crash frequency models. The proposed method is evaluated by comparing the performance of Base SPFs (developed using original data) and Augmented SPFs (developed using original data plus synthesised data) in terms of hotspot identification performance, model prediction accuracy, and dispersion parameter estimation accuracy. The experiments are conducted using simulated and real-world crash data sets. The results indicate that the synthesised crash data by CGAN hav…
Institute for Adaptive and Neural Computation（自适应与神经计算研究所）；The University of Edinburgh（爱丁堡大学）
Effective training of neural networks requires much data. In the low-data regime, parameters are underdetermined, and learnt networks generalise poorly. Data Augmentation alleviates this by using existing data more effectively. However standard data augmentation produces only limited plausible alternative data. Given there is potential to generate a much broader set of augmentations, we design and train a generative model to do data augmentation. The model, based on image conditional Generative Adversarial Networks, takes data from a source domain and learns to take any data item and generalis…
Courant Institute, New York University（纽约大学库朗研究所）；Imagen Technologies（伊马根科技公司）
Insufficient training data and severe class imbalance are often limiting factors when developing machine learning models for the classification of rare diseases. In this work, we address the problem of classifying bone lesions from X-ray images by increasing the small number of positive samples in the training set. We propose a generative data augmentation approach based on a cycle-consistent generative adversarial network that synthesizes bone lesions on images without pathology. We pose the generative task as an image-patch translation problem that we optimize specifically for distinct bones…
Crowdsourcing provides an efficient label collection schema for supervised machine learning. However, to control annotation cost, each instance in the crowdsourced data is typically annotated by a small number of annotators. This creates a sparsity issue and limits the quality of machine learning models trained on such data. In this paper, we study how to handle sparsity in crowdsourced data using data augmentation. Specifically, we propose to directly learn a classifier by augmenting the raw sparse annotations. We implement two principles of high-quality augmentation using Generative Adversar…
One of the big restrictions in brain computer interface field is the very limited training samples, it is difficult to build a reliable and usable system with such limited data. Inspired by generative adversarial networks, we propose a conditional Deep Convolutional Generative Adversarial (cDCGAN) Networks method to generate more artificial EEG signal automatically for data augmentation to improve the performance of convolutional neural networks in brain computer interface field and overcome the small training dataset problems. We evaluate the proposed cDCGAN method on BCI competition dataset …
University of Toronto（多伦多大学）；Vector Institute（向量学院）；Google Research（谷歌研究院）
We introduce Exemplar VAEs, a family of generative models that bridge the gap between parametric and non-parametric, exemplar based generative models. Exemplar VAE is a variant of VAE with a non-parametric prior in the latent space based on a Parzen window estimator. To sample from it, one first draws a random exemplar from a training set, then stochastically transforms that exemplar into a latent code and a new observation. We propose retrieval augmented training (RAT) as a way to speed up Exemplar VAE training by using approximate nearest neighbor search in the latent space to define a lower…
In this paper we propose a data augmentation method for time series with irregular sampling, Time-Conditional Generative Adversarial Network (T-CGAN). Our approach is based on Conditional Generative Adversarial Networks (CGAN), where the generative step is implemented by a deconvolutional NN and the discriminative step by a convolutional NN. Both the generator and the discriminator are conditioned on the sampling timestamps, to learn the hidden relationship between data and timestamps, and consequently to generate new time series. We evaluate our model with synthetic and real-world datasets. F…
Universidad de Chile（智利大学）；Harvard University（哈佛大学）；Millennium Institute of Astrophysics（千年天体物理研究所）
Due to the latest advances in technology, telescopes with significant sky coverage will produce millions of astronomical alerts per night that must be classified both rapidly and automatically. Currently, classification consists of supervised machine learning algorithms whose performance is limited by the number of existing annotations of astronomical objects and their highly imbalanced class distributions. In this work, we propose a data augmentation methodology based on Generative Adversarial Networks (GANs) to generate a variety of synthetic light curves from variable stars. Our novel contr…
The data scarcity problem in emotion recognition from electroencephalography (EEG) leads to difficulty in building an affective model with high accuracy using machine learning algorithms or deep neural networks. Inspired by emerging deep generative models, we propose three methods for augmenting EEG training data to enhance the performance of emotion recognition models. Our proposed methods are based on two deep generative models, variational autoencoder (VAE) and generative adversarial network (GAN), and two data augmentation strategies. For the full usage strategy, all of the generated data …
Computer-assisted diagnosis (CAD) based on deep learning has become a crucial diagnostic technology in the medical industry, effectively improving diagnosis accuracy. However, the scarcity of brain tumor Magnetic Resonance (MR) image datasets causes the low performance of deep learning algorithms. The distribution of transformed images generated by traditional data augmentation (DA) intrinsically resembles the original ones, resulting in a limited performance in terms of generalization ability. This work improves Progressive Growing of GANs with a structural similarity loss function (PGGAN-SSI…
Sentiment analysis is a task that may suffer from a lack of data in certain cases, as the datasets are often generated and annotated by humans. In cases where data is inadequate for training discriminative models, generate models may aid training via data augmentation. Generative Adversarial Networks (GANs) are one such model that has advanced the state of the art in several tasks, including as image and text generation. In this paper, I train GAN models on low resource datasets, then use them for the purpose of data augmentation towards improving sentiment classifier generalization. Given the…
University of Applied Sciences（应用科学大学）；Information Technologies Institute（信息技术研究所）
Sequential data in industrial applications can be used to train and evaluate machine learning models (e.g. classifiers). Since gathering representative amounts of data is difficult and time consuming, there is an incentive to generate it from a small ground truth. Data augmentation is a common method to generate more data through a priori knowledge with one specific method, so called generative adversarial networks (GANs), enabling data generation from noise. This paper investigates the possibility of using GANs in order to augment sequential Internet of Things (IoT) data, with an example impl…
NVIDIA Corporation（英伟达公司）；MGH & BWH Center for Clinical Data Science（麻省总医院与布列根和妇女医院临床数据科学中心）；Mayo Clinic（妙佑医疗国际）
Data diversity is critical to success when training deep learning models. Medical imaging data sets are often imbalanced as pathologic findings are generally rare, which introduces significant challenges when training deep learning models. In this work, we propose a method to generate synthetic abnormal MRI images with brain tumors by training a generative adversarial network using two publicly available data sets of brain MRI. We demonstrate two unique benefits that the synthetic images provide. First, we illustrate improved performance on tumor segmentation by leveraging the synthetic images…
Hybrid Adversarial Spectral Loss Conditional Generative Adversarial Networks for Signal Data Augmentation in Ultra-precision Machining Surface Roughness Prediction
University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）
We present an empirical evaluation of fMRI data augmentation via synthesis. For synthesis we use generative mod-els trained on real neuroimaging data to produce novel task-dependent functional brain images. Analyzed generative mod-els include classic approaches such as the Gaussian mixture model (GMM), and modern implicit generative models such as the generative adversarial network (GAN) and the variational auto-encoder (VAE). In particular, the proposed GAN and VAE models utilize 3-dimensional convolutions, which enables modeling of high-dimensional brain image tensors with structured spatial…
Universitat Jaume I（海梅一世大学）；Tampere University（坦佩雷大学）；Universidade do Minho（米尼奥大学）
Indoor Positioning based on Machine Learning has drawn increasing attention both in the academy and the industry as meaningful information from the reference data can be extracted. Many researchers are using supervised, semi-supervised, and unsupervised Machine Learning models to reduce the positioning error and offer reliable solutions to the end-users. In this article, we propose a new architecture by combining Convolutional Neural Network (CNN), Long short-term memory (LSTM) and Generative Adversarial Network (GAN) in order to increase the training data and thus improve the position accurac…
The University of Tokyo（东京大学）；National Center for Global Health and Medicine（国立国际医疗研究中心）；Kyushu Medical Center（九州医疗中心）
Convolutional Neural Networks (CNNs) can play a key role in Medical Image Analysis under large-scale annotated datasets. However, preparing such massive dataset is demanding. In this context, Generative Adversarial Networks (GANs) can generate realistic but novel samples, and thus effectively cover the real image distribution. In terms of interpolation, the GAN-based medical image augmentation is reliable because medical modalities can display the human body's strong anatomical consistency at fixed position while clearly reflecting inter-subject variability; thus, we propose to use noise-to-im…
Scaffold-Aware Generative Augmentation and Reranking for Enhanced Virtual Screening
Yale University（耶鲁大学）；University of Oregon（俄勒冈大学）；Broad Institute of MIT and Harvard（MIT和哈佛大学Broad研究所）；Leipzig University（莱比锡大学）；Vanderbilt University（范德比大学）
SkinGenBench: Generative Model and Preprocessing Effects for Synthetic Dermoscopic Augmentation in Melanoma Diagnosis
Alliance School of Advanced Computing, Alliance University, India（印度联盟大学高级计算学院）；Department of Computer Science and Communication, Østfold University College, 1783 Halden, Norway（挪威东福尔大学学院计算机科学与传播系）；Department of Dentistry and Oral Health, Aarhus University, 8000 Aarhus, Denmark（丹麦奥胡斯大学牙科与口腔健康系）
Charles River Analytics（查尔斯河分析公司）；U.S. Army CCDC C5ISR Center（美国陆军作战能力发展司令部C5ISR中心）
Recent advances in machine learning (ML) and computer vision tools have enabled applications in a wide variety of arenas such as financial analytics, medical diagnostics, and even within the Department of Defense. However, their widespread implementation in real-world use cases poses several challenges: (1) many applications are highly specialized, and hence operate in a \emph{sparse data} domain; (2) ML tools are sensitive to their training sets and typically require cumbersome, labor-intensive data collection and data labelling processes; and (3) ML tools can be extremely "black box," offeri…
Vicomtech Foundation, Basque Research and Technology Alliance (BRTA)（巴斯克研究与技术联盟（BRTA）维康特克基金会）；Institute of Smart Cities, Public University of Navarre（纳瓦拉公立大学智慧城市学院）
In Bitcoin entity classification, results are strongly conditioned by the ground-truth dataset, especially when applying supervised machine learning approaches. However, these ground-truth datasets are frequently affected by significant class imbalance as generally they contain much more information regarding legal services (Exchange, Gambling), than regarding services that may be related to illicit activities (Mixer, Service). Class imbalance increases the complexity of applying machine learning techniques and reduces the quality of classification results, especially for underrepresented, but…
Enhancing Activity Recognition After Stroke: Generative Adversarial Networks for Kinematic Data Augmentation
Hadley Research, LLC（哈德利研究有限责任公司）；Case Western Reserve University（凯斯西储大学）；Louis Stokes Cleveland Department of Veterans Affairs Medical Center（路易斯·斯托克斯克利夫兰退伍军人事务部医疗中心）
Data augmentation through multivariate scenario forecasting in Data Centers using Generative Adversarial Networks
IIT - Instituto de Investigación Tecnológica, Universidad Pontificia Comillas（科米利亚斯主教大学技术研究所（IIT））；Universidad Politécnica de Madrid（马德里理工大学）；CCS - Center for Computational Simulation（计算模拟中心（CCS））
University of Strasbourg（斯特拉斯堡大学）；University of Belgrade（贝尔格莱德大学）；University of Kragujevac（克拉古耶瓦茨大学）；Hannover Medical School（汉诺威医学院）；University Clinic, Freiburg（弗赖堡大学诊所）
The application of supervised deep learning methods in digital pathology is limited due to their sensitivity to domain shift. Digital Pathology is an area prone to high variability due to many sources, including the common practice of evaluating several consecutive tissue sections stained with different staining protocols. Obtaining labels for each stain is very expensive and time consuming as it requires a high level of domain knowledge. In this article, we propose an unsupervised augmentation approach based on adversarial image-to-image translation, which facilitates the training of stain in…
Data augmentation is a widely used technique in classification to increase data used in training. It improves generalization and reduces amount of annotated human activity data needed for training which reduces labour and time needed with the dataset. Sensor time-series data, unlike images, cannot be augmented by computationally simple transformation algorithms. State of the art models like Recurrent Generative Adversarial Networks (RGAN) are used to generate realistic synthetic data. In this paper, transformer based generative adversarial networks which have global attention on data, are comp…
College of Computer Science, Nankai University（南开大学计算机学院）；Academy of Mathematics and Systems Science, Chinese Academy of Sciences（中国科学院数学与系统科学研究院）；Agro-environmental Protection Institute, Ministry of Agriculture（农业农村部环境保护科研监测所）
In recent studies, Generative Adversarial Network (GAN) is one of the popular schemes to augment the image dataset. However, in our study we find the generator G in the GAN fails to generate numerical data in lower-dimensional spaces, and we address overfitting in the generation. By analyzing the Directed Graphical Model (DGM), we propose a theoretical restraint, independence on the loss function, to suppress the overfitting. Practically, as the Statically Restrained GAN (SRGAN) and Dynamically Restrained GAN (DRGAN), two frameworks are proposed to employ the theoretical restraint to the netwo…
Shien-Ming Wu School of Intelligent Engineering, South China University of Technology（华南理工大学吴贤铭智能工程学院）
The cross-subject application of EEG-based brain-computer interface (BCI) has always been limited by large individual difference and complex characteristics that are difficult to perceive. Therefore, it takes a long time to collect the training data of each user for calibration. Even transfer learning method pre-training with amounts of subject-independent data cannot decode different EEG signal categories without enough subject-specific data. Hence, we proposed a cross-subject EEG classification framework with a generative adversarial networks (GANs) based method named common spatial GAN (CS-…
Generative Data Augmentation Challenge: Synthesis of Room Acoustics for Speaker Distance Estimation
University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Treble Technologies（特雷布科技公司）；University of Maryland（马里兰大学）；Google Research（谷歌研究院）；Amazon Lab126（亚马逊Lab126）；Reykjavik University（雷克雅未克大学）
University of St. Gallen（圣加仑大学）；Reykjavik University（雷克雅未克大学）
Speech Emotion Recognition (SER) is crucial for human-computer interaction but still remains a challenging problem because of two major obstacles: data scarcity and imbalance. Many datasets for SER are substantially imbalanced, where data utterances of one class (most often Neutral) are much more frequent than those of other classes. Furthermore, only a few data resources are available for many existing spoken languages. To address these problems, we exploit a GAN-based augmentation model guided by a triplet network, to improve SER performance given imbalanced and insufficient training data. W…
The classification of acoustic environments allows for machines to better understand the auditory world around them. The use of deep learning in order to teach machines to discriminate between different rooms is a new area of research. Similarly to other learning tasks, this task suffers from the high-dimensionality and the limited availability of training data. Data augmentation methods have proven useful in addressing this issue in the tasks of sound event detection and scene classification. This paper proposes a method for data augmentation for the task of room classification from reverbera…
Information Technology University (ITU)（信息技术大学（ITU））；University of Southern Queensland（南昆士兰大学）；Qatar University（卡塔尔大学）
Despite advances in deep learning, current state-of-the-art speech emotion recognition (SER) systems still have poor performance due to a lack of speech emotion datasets. This paper proposes augmenting SER systems with synthetic emotional speech generated by an end-to-end text-to-speech (TTS) system based on an extended Tacotron architecture. The proposed TTS system includes encoders for speaker and emotion embeddings, a sequence-to-sequence text generator for creating Mel-spectrograms, and a WaveRNN to generate audio from the Mel-spectrograms. Extensive experiments show that the quality of th…
Generative Data Augmentation Challenge: Zero-Shot Speech Synthesis for Personalized Speech Enhancement
University of Illinois Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Indiana University（印第安纳大学）；University of Maryland（马里兰大学）；Google Research（谷歌研究院）；Amazon Lab126（亚马逊Lab126）；Reykjavik University（雷克雅未克大学）
