Given an integer array $A[1..n]$, the Range Minimum Query problem (RMQ) asks to preprocess $A$ into a data structure, supporting RMQ queries: given $a,b\in [1,n]$, return the index $i\in[a,b]$ that minimizes $A[i]$, i.e., $\mathrm{argmin}_{i\in[a,b]} A[i]$. This problem has a classic solution using $O(n)$ space and $O(1)$ query time by Gabow, Bentley, Tarjan (STOC, 1984) and Harel, Tarjan (SICOMP, 1984). The best known data structure by Fischer, Heun (SICOMP, 2011) and Navarro, Sadakane (TALG, 2014) uses $2n+n/(\frac{\log n}{t})^t+\tilde{O}(n^{3/4})$ bits and answers queries in $O(t)$ time, assuming the word-size is $w=Θ(\log n)$. In particular, it uses $2n+n/\mathrm{poly}\log n$ bits of space as long as the query time is a constant.
In this paper, we prove the first lower bound for this problem, showing that $2n+n/\mathrm{poly}\log n$ space is necessary for constant query time. In general, we show that if the data structure has query time $O(t)$, then it must use at least $2n+n/(\log n)^{\tilde{O}(t^2)}$ space, in the cell-probe model with word-size $w=Θ(\log n)$.
We consider the problem of designing succinct navigational oracles, i.e., succinct data structures supporting basic navigational queries such as degree, adjacency, and neighborhood efficiently for intersection graphs on a circle, which include graph classes such as {\it circle graphs}, {\it $k$-polygon-circle graphs}, {\it circle-trapezoid graphs}, {\it trapezoid graphs}. The degree query reports the number of incident edges to a given vertex, the adjacency query asks if there is an edge between two given vertices, and the neighborhood query enumerates all the neighbors of a given vertex. We f…
We consider the problem of designing a succinct data structure for {\it path graphs} (which are a proper subclass of chordal graphs and a proper superclass of interval graphs) on $n$ vertices while supporting degree, adjacency, and neighborhood queries efficiently. We provide the following two solutions for this problem: - an $n \log n+o(n \log n)$-bit succinct data structure that supports adjacency query in $O(\log n)$ time, neighborhood query in $O(d \log n)$ time and finally, degree query in $\min\{O(\log^2 n), O(d \log n)\}$ where $d$ is the degree of the queried vertex. - an $O(n \log^2 n…
The rank problem in succinct data structures asks to preprocess an array A[1..n] of bits into a data structure using as close to n bits as possible, and answer queries of the form rank(k) = Sum_{i=1}^k A[i]. The problem has been intensely studied, and features as a subroutine in a majority of succinct data structures. We show that in the cell probe model with w-bit cells, if rank takes t time, the space of the data structure must be at least n + n/w^{O(t)} bits. This redundancy/query trade-off is essentially optimal, matching our upper bound from [FOCS'08].
For a static array A of n ordered objects, a range minimum query asks for the position of the minimum between two specified array indices. We show how to preprocess A into a scheme of size 2n+o(n) bits that allows to answer range minimum queries on A in constant time. This space is asymptotically optimal in the important setting where access to A is not permitted after the preprocessing step. Our scheme can be computed in linear time, using only n + o(n) additional bits at construction time. In interesting by-product is that we also improve on LCA-computation in BPS- or DFUDS-encoded trees.
We perform experimental studies on data structures that answer path median, path counting, and path reporting queries in weighted trees. These query problems generalize the well-known range median query problem in arrays, as well as the $2d$ orthogonal range counting and reporting problems in planar point sets, to tree structured data. We propose practical realizations of the latest theoretical results on path queries. Our data structures, which use tree extraction, heavy-path decomposition and wavelet trees, are implemented in both succinct and pointer-based form. Our succinct data structures…
We consider the problem of designing succinct data structures for interval graphs with $n$ vertices while supporting degree, adjacency, neighborhood and shortest path queries in optimal time in the $Θ(\log n)$-bit word RAM model. The degree query reports the number of incident edges to a given vertex in constant time, the adjacency query returns true if there is an edge between two vertices in constant time, the neighborhood query reports the set of all adjacent vertices in time proportional to the degree of the queried vertex, and the shortest path query returns a shortest path in time propor…
The range-minimum query (RMQ) problem is a fundamental data structuring task with numerous applications. Despite the fact that succinct solutions with worst-case optimal $2n+o(n)$ bits of space and constant query time are known, it has been unknown whether such a data structure can be made adaptive to the reduced entropy of random inputs (Davoodi et al. 2014). We construct a succinct data structure with the optimal $1.736n+o(n)$ bits of space on average for random RMQ instances, settling this open problem. Our solution relies on a compressed data structure for binary trees that is of independe…
We design succinct encodings of {\it series-parallel, block-cactus} and {\it 3-leaf power} graphs while supporting the basic navigational queries such as degree, adjacency and neighborhood {\it optimally} in the RAM model with logarithmic word size. One salient feature of our representation is that it can achieve optimal space even though the exact space lower bound for these graph classes is not known. For these graph classes, we provide succinct data structures with optimal query support for the first time in the literature. For series-parallel multigraphs, our work also extends the works of…
We propose to design data structures called succinct geometric indexes of negligible space (more precisely, o(n) bits) that, by taking advantage of the n points in the data set permuted and stored elsewhere as a sequence, to support geometric queries in optimal time. Our first and main result is a succinct geometric index that can answer point location queries, a fundamental problem in computational geometry, on planar triangulations in O(lg n) time. We also design three variants of this index. The first supports point location using $\lg n + 2\sqrt{\lg n} + O(\lg^{1/4} n)$ point-line comparis…
Given a partition of an n element set into equivalence classes, we consider time-space tradeoffs for representing it to support the query that asks whether two given elements are in the same equivalence class. This has various applications including for testing whether two vertices are in the same component in an undirected graph or in the same strongly connected component in a directed graph. We consider the problem in several models. -- Concerning labeling schemes where we assign labels to elements and the query is to be answered just by examining the labels of the queried elements (without …
We consider the problem of preprocessing $N$ points in 2D, each endowed with a priority, to answer the following queries: given a axis-parallel rectangle, determine the point with the largest priority in the rectangle. Using the ideas of the \emph{effective entropy} of range maxima queries and \emph{succinct indices} for range maxima queries, we obtain a structure that uses O(N) words and answers the above query in $O(\log N \log \log N)$ time. This is a direct improvement of Chazelle's result from FOCS 1985 for this problem -- Chazelle required $O(N/ε)$ words to answer queries in $O((\log N)^…
The conjectured hardness of Boolean matrix-vector multiplication has been used with great success to prove conditional lower bounds for numerous important data structure problems, see Henzinger et al. [STOC'15]. In recent work, Larsen and Williams [SODA'17] attacked the problem from the upper bound side and gave a surprising cell probe data structure (that is, we only charge for memory accesses, while computation is free). Their cell probe data structure answers queries in $\tilde{O}(n^{7/4})$ time and is succinct in the sense that it stores the input matrix in read-only memory, plus an additi…
We consider the problem of summarizing a multi set of elements in $\{1, 2, \ldots , n\}$ under the constraint that no element appears more than $\ell$ times. The goal is then to answer \emph{rank} queries --- given $i\in\{1, 2, \ldots , n\}$, how many elements in the multi set are smaller than $i$? --- with an additive error of at most $Δ$ and in constant time. For this problem, we prove a lower bound of $\mathcal B_{\ell,n,Δ}\triangleq$ $\left\lfloor{\frac{n}{\left\lceil{Δ/ \ell}\right\rceil}}\right\rfloor $ $\log\big({\max\{\left\lfloor{\ell / Δ}\right\rfloor,1\} + 1}\big)$ bits and provide …
We study the problem of indexing text with wildcard positions, motivated by the challenge of aligning sequencing data to large genomes that contain millions of single nucleotide polymorphisms (SNPs)---positions known to differ between individuals. SNPs modeled as wildcards can lead to more informed and biologically relevant alignments. We improve the space complexity of previous approaches by giving a succinct index requiring $(2 + o(1))n \log σ+ O(n) + O(d \log n) + O(k \log k)$ bits for a text of length $n$ over an alphabet of size $σ$ containing $d$ groups of $k$ wildcards. A key to the spa…
Stanford University（斯坦福大学）；Massachusetts Institute of Technology（麻省理工学院）
We consider the problem of explaining the predictions of an arbitrary blackbox model $f$: given query access to $f$ and an instance $x$, output a small set of $x$'s features that in conjunction essentially determines $f(x)$. We design an efficient algorithm with provable guarantees on the succinctness and precision of the explanations that it returns. Prior algorithms were either efficient but lacked such guarantees, or achieved such guarantees but were inefficient. We obtain our algorithm via a connection to the problem of {\sl implicitly} learning decision trees. The implicit nature of this …
An approximate distance oracle is a succinct data structure that provides fast answers to distance queries between any two nodes. In this paper we consider approximate distance oracles for general undirected graphs with non-negative edge weights with constant query time. We present a distance oracle of size O(k n^{1+1/k}), with 2k-1 stretch and O(1) query time. This improves the O(log{k}) query time of Wulff-Nilsen's distance oracle [SODA '13], which in turn improved the O(k) query time of Thorup and Zwick's distance oracle [J. ACM '05].
Given a set $S$ of $n$ (distinct) keys from key space $[U]$, each associated with a value from $Σ$, the \emph{static dictionary} problem asks to preprocess these (key, value) pairs into a data structure, supporting value-retrieval queries: for any given $x\in [U]$, $\mathtt{valRet}(x)$ must return the value associated with $x$ if $x\in S$, or return $\bot$ if $x\notin S$. The special case where $|Σ|=1$ is called the \emph{membership} problem. The "textbook" solution is to use a hash table, which occupies linear space and answers each query in constant time. On the other hand, the minimum possi…
A common approach to data analysis involves understanding and manipulating succinct representations of data. In earlier work, we put forward a succinct representation system for relational data called factorised databases and reported on the main-memory query engine FDB for select-project-join queries on such databases. In this paper, we extend FDB to support a larger class of practical queries with aggregates and ordering. This requires novel optimisation and evaluation techniques. We show how factorisation coupled with partial aggregation can effectively reduce the number of operations neede…
Deterministic finite automata are one of the simplest and most practical models of computation studied in automata theory. Their conceptual extension is the non-deterministic finite automata which also have plenty of applications. In this article, we study these models through the lens of succinct data structures where our ultimate goal is to encode these mathematical objects using information-theoretically optimal number of bits along with supporting queries on them efficiently. Towards this goal, we first design a succinct data structure for representing any deterministic finite automaton $\…
Factorised databases are relational databases that use compact factorised representations at the physical layer to reduce data redundancy and boost query performance. This paper introduces FDB, an in-memory query engine for select-project-join queries on factorised databases. Key components of FDB are novel algorithms for query optimisation and evaluation that exploit the succinctness brought by data factorisation. Experiments show that for data sets with many-to-many relationships FDB can outperform relational engines by orders of magnitude.
We propose a B tree representation storing $n$ keys, each of $k$ bits, in either (a) $nk + O(nk / \lg n)$ bits or (b) $nk + O(nk \lg \lg n/ \lg n)$ bits of space supporting all B tree operations in either (a) $O(\lg n )$ time or (b) $O(\lg n / \lg \lg n)$ time, respectively. We can augment each node with an aggregate value such as the minimum value within its subtree, and maintain these aggregate values within the same space and time complexities. Finally, we give the sparse suffix tree as an application, and present a linear-time algorithm computing the sparse longest common prefix array from…
Given a large edge-weighted network $G$ with $k$ terminal vertices, we wish to compress it and store, using little memory, the value of the minimum cut (or equivalently, maximum flow) between every bipartition of terminals. One appealing methodology to implement a compression of $G$ is to construct a \emph{mimicking network}: a small network $G'$ with the same $k$ terminals, in which the minimum cut value between every bipartition of terminals is the same as in $G$. This notion was introduced by Hagerup, Katajainen, Nishimura, and Ragde [JCSS '98], who proved that such $G'$ of size at most $2^…
A retrieval data structure for a static function $f:S\rightarrow \{0,1\}^r$ supports queries that return $f(x)$ for any $x \in S$. Retrieval data structures can be used to implement a static approximate membership query data structure (AMQ), i.e., a Bloom filter alternative, with false positive rate $2^{-r}$. The information-theoretic lower bound for both tasks is $r|S|$ bits. While succinct theoretical constructions using $(1+o(1))r|S|$ bits were known, these could not achieve very small overheads in practice because they have an unfavorable space--time tradeoff hidden in the asymptotic costs…
In this paper, we identify a fundamental algorithmic problem that we term succinct dynamic covering (SDC), arising in many modern-day web applications, including ad-serving and online recommendation systems in eBay and Netflix. Roughly speaking, SDC applies two restrictions to the well-studied Max-Coverage problem: Given an integer k, X={1,2,...,n} and I={S_1, ..., S_m}, S_i a subset of X, find a subset J of I, such that |J| <= k and the union of S in J is as large as possible. The two restrictions applied by SDC are: (1) Dynamic: At query-time, we are given a query Q, a subset of X, and our g…
Given an $n$-bit array $A$, the succinct rank data structure problem asks to construct a data structure using space $n+r$ bits for $r\ll n$, supporting rank queries of form $\mathtt{rank}(x)=\sum_{i=0}^{x-1} A[i]$. In this paper, we design a new succinct rank data structure with $r=n/(\log n)^{Ω(t)}+n^{1-c}$ and query time $O(t)$ for some constant $c>0$, improving the previous best-known by Patrascu [Pat08], which has $r=n/(\frac{\log n}{t})^{Ω(t)}+\tilde{O}(n^{3/4})$ bits of redundancy. For $r>n^{1-c}$, our space-time tradeoff matches the cell-probe lower bound by Patrascu and Viola [PV10], w…
LRM-Trees are an elegant way to partition a sequence of values into sorted consecutive blocks, and to express the relative position of the first element of each block within a previous block. They were used to encode ordinal trees and to index integer arrays in order to support range minimum queries on them. We describe how they yield many other convenient results in a variety of areas, from data structures to algorithms: some compressed succinct indices for range minimum queries; a new adaptive sorting algorithm; and a compressed succinct data structure for permutations supporting direct and …
We solve an open problem related to an optimal encoding of a straight line program (SLP), a canonical form of grammar compression deriving a single string deterministically. We show that an information-theoretic lower bound for representing an SLP with n symbols requires at least 2n+logn!+o(n) bits. We then present a succinct representation of an SLP; this representation is asymptotically equivalent to the lower bound. The space is at most 2n log {rho}(1 + o(1)) bits for rho leq 2sqrt{n}, while supporting random access to any production rule of an SLP in O(log log n) time. In addition, we pres…
We revisit the range minimum query problem and present a new O(n)-space data structure that supports queries in O(1) time. Although previous data structures exist whose asymptotic bounds match ours, our goal is to introduce a new solution that is simple, intuitive, and practical without increasing costs for query time or space.
We propose a new succinct representation of labeled trees which represents a tree T using |T|H_k(T) number of bits (plus some smaller order terms), where |T|H_k(T) denotes the k-th order (tree label) entropy, as defined by Ferragina at al. 2005. Our representation employs a new, simple method of partitioning the tree, which preserves both tree shape and node degrees. Previously, the only representation that used |T|H_k(T) bits was based on XBWT, a transformation that linearizes tree labels into a single string, combined with compression boosting. The proposed representation is much simpler tha…
The problem of dictionary matching is a classical problem in string matching: given a set S of d strings of total length n characters over an (not necessarily constant) alphabet of size sigma, build a data structure so that we can match in a any text T all occurrences of strings belonging to S. The classical solution for this problem is the Aho-Corasick automaton which finds all occ occurrences in a text T in time O(|T| + occ) using a data structure that occupies O(m log m) bits of space where m <= n + 1 is the number of states in the automaton. In this paper we show that the Aho-Corasick auto…
Massive datasets of spatial trajectories representing the mobility of a diversity of moving objects are ubiquitous in research and industry. Similarity search of a large collection of trajectories is indispensable for turning these datasets into knowledge. Locality sensitive hashing (LSH) is a powerful technique for fast similarity searches. Recent methods employ LSH and attempt to realize an efficient similarity search of trajectories; however, those methods are inefficient in terms of search time and memory when applied to massive datasets. To address this problem, we present the trajectory-…
Tree path minimum query problem is a fundamental problem while processing trees, and is used widely in minimum spanning tree verification and randomized minimum spanning tree algorithms. In this paper, we study the possibility of building an oracle in advance, which is able to answer the queries efficiently. We present an algorithm based on Boruvka trees. Our algorithm is the first to achieve a near-optimal bound on query time, while matching the currently optimal trade-off between construction time and the number of comparisons required at query. Particularly, in order to answer each query wi…
Indexing of static and dynamic sets is fundamental to a large set of applications such as information retrieval and caching. Denoting the characteristic vector of the set by B, we consider the problem of encoding sets and multisets to support approximate versions of the operations rank(i) (i.e., computing sum_{j <= i}B[j]) and select(i) (i.e., finding min{p | rank(p) >= i}) queries. We study multiple types of approximations (allowing an error in the query or the result) and present lower bounds and succinct data structures for several variants of the problem. We also extend our model to slidin…
The representation of binary relations has been intensively studied and many different theoretical and practical representations have been proposed to answer the usual queries in multiple domains. However, ternary relations have not received as much attention, even though many real-world applications require the processing of ternary relations. In this paper we present a new compressed and self-indexed data structure that we call Interleaved $K^2$-tree (I$K^2$-tree), designed to compactly represent and efficiently query general ternary relations. The I$K^2$-tree is an evolution of an existing …
As techniques for graph query processing mature, the need for optimization is increasingly becoming an imperative. Indices are one of the key ingredients toward efficient query processing strategies via cost-based optimization. Due to the apparent absence of a common representation model, it is difficult to make a focused effort toward developing access structures, metrics to evaluate query costs, and choose alternatives. In this context, recent interests in covering-based graph matching appears to be a promising direction of research. In this paper, our goal is to formally introduce a new gra…
In this work, we resolve the query complexity of global minimum cut problem for a graph by designing a randomized algorithm for approximating the size of minimum cut in a graph, where the graph can be accessed through local queries like {\sc Degree}, {\sc Neighbor}, and {\sc Adjacency} queries. Given $ε\in (0,1)$, the algorithm with high probability outputs an estimate $\hat{t}$ satisfying the following $(1-ε) t \leq \hat{t} \leq (1+ε) t$, where $m$ is the number of edges in the graph and $t$ is the size of minimum cut in the graph. The expected number of local queries used by our algorithm is…
The minimum-cost $k$-edge-connected spanning subgraph ($k$-ECSS) problem is a generalization and strengthening of the well-studied minimum-cost spanning tree (MST) problem. While the round complexity of distributedly computing the latter has been well-understood, the former remains mostly open, especially as soon as $k\geq 3$. In this paper, we present the first distributed algorithm that computes an approximation of $k$-ECSS in sublinear time for general $k$. Concretely, we describe a randomized distributed algorithm that, in $\tilde{O}(k(D+k\sqrt{n}))$ rounds, computes a $k$-edge-connected s…
We study the minimum weight basis problem on matroid when elements' weights are uncertain. For each element we only know a set of possible values (an uncertainty area) that contains its real weight. In some cases there exist bases that are uniformly optimal, that is, they are minimum weight bases for every possible weight function obeying the uncertainty areas. In other cases, computing such a basis is not possible unless we perform some queries for the exact value of some elements. Our main result is a polynomial time algorithm for the following problem. Given a matroid with uncertainty areas…
The Cayley table representation of a group uses $\mathcal{O}(n^2)$ words for a group of order $n$ and answers multiplication queries in time $\mathcal{O}(1)$. It is interesting to ask if there is a $o(n^2)$ space representation of groups that still has $\mathcal{O}(1)$ query-time. We show that for any $δ$, $\frac{1}{\log n} \le δ\le 1$, there is an $\mathcal{O}(\frac{n^{1 +δ}}δ)$ space representation for groups of order $n$ with $\mathcal{O}(\frac{1}δ)$ query-time. We also show that for Z-groups, simple groups and several group classes defined in terms of semidirect product, there are linear s…
The choice dictionary is introduced as a data structure that can be initialized with a parameter $n\in\mathbb{N}=\{1,2,\ldots\}$ and subsequently maintains an initially empty subset $S$ of $\{1,\ldots,n\}$ under insertion, deletion, membership queries and an operation choice that returns an arbitrary element of $S$. The choice dictionary appears to be fundamental in space-efficient computing. We show that there is a choice dictionary that can be initialized with $n$ and an additional parameter $t\in\mathbb{N}$ and subsequently occupies $n+O(n(t/w)^t+\log n)$ bits of memory and executes each of…
