The novel coronavirus, SARS-CoV-2, and the disease it causes, COVID-19 was declared a pandemic on March 11, 2020 by the World Health Organization. Since then, the disease has spread all over the world, with the United States becoming the country with the highest number of cases. Governments around the world have undertaken varying degrees of public safety measures, including recommendations and ad campaigns for improved hygiene practices, enacting social distancing requirements and limiting large public gatherings, and stay-at-home orders and lockdowns. In the United States, while the response has varied greatly from state to state, we clearly see that the effect of these public safety measures is significant and, if these measures continue to remain in effect, or are expanded to a nationwide lockdown, the pandemic can be controlled and the disease likely overcome with mitigated consequences. In this paper, we model the spread of the novel coronavirus using a causal model. We find that, with continued lockdown measures, the United States can, according to this model, limit the total number of infections to ~1.35 million and the total number of deaths to ~72 thousand. A 60 day lockdown can save countless lives.
Correlation between weather and the transmission of SARS-CoV-2 may suggest its seasonality. Cointegration analysis can avoid spurious correlation among time series data. We examined the cointegration of virus transmission with daily temperature, dewpoint, and confounding factors of mobility measurements during the first year of the pandemic in the United States. We examined the cointegration of the effective reproductive rate, Rt, of the virus with the dewpoint at two meters, the temperature at two meters, Apple driving mobility, and Google workplace mobility measurements. We found that dewpoi…
COVID-19 has devastated the entire global community. Vaccines present an opportunity to mitigate the pandemic; however, the effect of vaccination coupled with the behavioral response of the population is not well understood. We propose a model that incorporates two important dynamically varying population behaviors: level of caution and sense of safety. Level of caution increases with the number of infectious cases, while an increasing sense of safety with increased vaccination lowers precautionary behaviors. To the best of our knowledge, this is the first model that can effectively reproduce …
In this paper, we propose a two-group SIR epidemic model to simulate the outcome of stay-at-home policy and wearing face masks during the first COVID-19 epidemic wave in the United States. Based on our proposed model, we further use the optimal control approach (with the objective of minimizing total deaths) to find the optimal dynamical distribution of face masks between the healthcare workers and the general public. It is not surprising that all the face masks should be solely reserved for the healthcare workers if the supply is short. However, when the supply is indeed sufficient, our numer…
Background: The impact of individual non-pharmaceutical interventions (NPI) such as state-wide stay-at-home orders, school closures and gathering size limitations, on the COVID-19 epidemic is unknown. Understanding the impact that above listed NPI have on disease transmission is critical for policy makers, particularly as case counts increase again in some areas. Methods: Using a Bayesian framework, we reconstructed the incidence and time-varying reproductive number (Rt) curves to investigate the relationship between Rt, individual mobility as measured by Google Community Mobility Reports, and…
In March of this year, COVID-19 was declared a pandemic and it continues to threaten public health. This global health crisis imposes limitations on daily movements, which have deteriorated every sector in our society. Understanding public reactions to the virus and the non-pharmaceutical interventions should be of great help to fight COVID-19 in a strategic way. We aim to provide tangible evidence of the human mobility trends by comparing the day-by-day variations across the U.S. Large-scale public mobility at an aggregated level is observed by leveraging mobile device location data and the m…
In late-2020, many countries around the world faced another surge in number of confirmed cases of COVID-19, including United Kingdom, Canada, Brazil, United States, etc., which resulted in a large nationwide and even worldwide wave. While there have been indications that precaution fatigue could be a key factor, no scientific evidence has been provided so far. We used a stochastic metapopulation model with a hierarchical structure and fitted the model to the positive cases in the US from the start of outbreak to the end of 2020. We incorporated non-pharmaceutical interventions (NPIs) into this…
Pandemics have the potential to cause immense disruption and damage to communities and societies. In this paper, we propose a hybrid model to determine how the pandemic spread through the world. The model combines the SEIR-based model for local areas and the network model for global connection between countries. We simulate the potential pandemic with different origins and find how the difference of the origin of a pandemic influences the impact in the world. We investigate the travelers network which is derived from real data, and simulate 65 countries, and see how the pandemic spread through…
Epidemiological models with constant parameters may not capture satisfactory infection patterns in the presence of pharmaceutical and non-pharmaceutical mitigation measures during a pandemic, since infectiousness is a function of time. In this paper, an Epidemiology-Informed Neural Network algorithm is introduced to learn the time-varying transmission rate for the COVID-19 pandemic in the presence of various mitigation scenarios. There are asymptomatic infectives, mostly unreported, and the proposed algorithm learns the proportion of the total infective individuals that are asymptomatic infect…
The emergence of coronavirus disease 2019 (COVID-19) in the United States has forced federal and local governments to implement containment measures. Moreover, the severity of the situation has sparked engagement by both the research and clinical community with the goal of developing effective treatments for the disease. This article proposes a time dynamic prediction model with competing risks for the infected individual and develops a simple tool for policy makers to compare different strategies in terms of when to implement the strictest containment measures and how different treatments can…
The Richards family models comprise a well-known set of models with useful parameters to describe several aspects of disease outbreaks. Some of these models have been used to study the current Covid-19 pandemic. However, there seems to be confusion regarding the discrimination among competing models. In this paper a detailed application of Akaikes information approach is used to discern among models using data from The European Union, The United States and The United Kingdom. We argue that the epidemiological characteristics derived from competing models should be examined to complement the se…
The rapid spread of COVID-19 in the United States has imposed a major threat to public health, the real economy, and human well-being. With the absence of effective vaccines, the preventive actions of social distancing and travel reduction are recognized as essential non-pharmacologic approaches to control the spread of COVID-19. Prior studies demonstrated that human movement and mobility drove the spatiotemporal distribution of COVID-19 in China. Little is known, however, about the patterns and effects of co-location reduction on cross-county transmission risk of COVID-19. This study utilizes…
Public health surveillance systems often fail to detect emerging infectious diseases, particularly in resource limited settings. By integrating relevant clinical and internet-source data, we can close critical gaps in coverage and accelerate outbreak detection. Here, we present a multivariate algorithm that uses freely available online data to provide early warning of emerging influenza epidemics in the US. We evaluated 240 candidate predictors and found that the most predictive combination does \textit{not} include surveillance or electronic health records data, but instead consists of eight …
Purpose: This paper proposes a methodology and a computational tool to study the COVID-19 pandemic throughout the world and to perform a trend analysis to assess its local dynamics. Methods: Mathematical functions are employed to describe the number of cases and demises in each region and to predict their final numbers, as well as the dates of maximum daily occurrences and the local stabilization date. The model parameters are calibrated using a computational methodology for numerical optimization. Trend analyses are run, allowing to assess the effects of public policies. Easy to interpret met…
To contain the Coronavirus disease (COVID-19) pandemic, one of the non-pharmacological epidemic control measures in response to the COVID-19 outbreak is reducing the transmission rate of SARS-COV-2 in the population through (physical) social distancing. An interactive web-based mapping platform that provides timely quantitative information on how people in different counties and states reacted to the social distancing guidelines was developed with the support of the National Science Foundation (NSF). It integrates geographic information systems (GIS) and daily updated human mobility statistica…
As the coronavirus disease 2019 (COVID-19) continues to be a global pandemic, policy makers have enacted and reversed non-pharmaceutical interventions with various levels of restrictions to limit its spread. Data driven approaches that analyze temporal characteristics of the pandemic and its dependence on regional conditions might supply information to support the implementation of mitigation and suppression strategies. To facilitate research in this direction on the example of the United States, we present a machine-readable dataset that aggregates relevant data from governmental, journalisti…
Epidemic models play a key role in understanding and responding to the emerging COVID-19 pandemic. Widely used compartmental models are static and are of limited use to evaluate intervention strategies with the emerging pandemic. Applying the technology of data assimilation, we propose a Bayesian updating approach for estimating epidemiological parameters using observable information for the purpose of assessing the impacts of different intervention strategies. We adopt a concise renewal model and propose new parameters by disentangling the reduction of instantaneous reproduction number Rt int…
The COVID-19 pandemic has evolved over time through multiple spatial and temporal dynamics. The varying extent of interactions among different geographical areas can result to a complex pattern of spreading so that influences between these areas can be hard to discern. Here, we use cross-correlation analysis to detect synchronous evolution and potential inter-influences in the time evolution of new COVID-19 cases at the county level in the USA. Our analysis identified two main time periods with distinguishable features in the behavior of correlations. In the first phase, there were few strong …
The Severe Acute Respiratory Syndrome Corona Virus 2 (SARS-CoV-2), or Covid-19, burst into a pandemic in the beginning of 2020. An unprecedented worldwide effort involving academic institutions, regulatory agencies and industry is facing the challenges imposed by the rapidly spreading disease. Emergency use authorization for vaccines were granted in the beginning of December 2020 in Europe and nine days later in the United States. The urge for vaccination started a race, forcing governs and health care agencies to take decisions on the fly regarding the vaccination strategy and logistics. So f…
This paper introduces new methods to analyze the changing progression of COVID-19 cases to deaths in different waves of the pandemic. First, an algorithmic approach partitions each country or state's COVID-19 time series into a first wave and subsequent period. Next, offsets between case and death time series are learned for each country via a normalized inner product. Combining these with additional calculations, we can determine which countries have most substantially reduced the mortality rate of COVID-19. Finally, our paper identifies similarities in the trajectories of cases and deaths fo…
The outbreak of COVID-19 led to a record-breaking race to develop a vaccine. However, the limited vaccine capacity creates another massive challenge: how to distribute vaccines to mitigate the near-end impact of the pandemic? In the United States in particular, the new Biden administration is launching mass vaccination sites across the country, raising the obvious question of where to locate these clinics to maximize the effectiveness of the vaccination campaign. This paper tackles this question with a novel data-driven approach to optimize COVID-19 vaccine distribution. We first augment a sta…
Objectives: We aim to assess the impact of temperature and relative humidity on the transmission of COVID-19 across communities after accounting for community-level factors such as demographics, socioeconomic status, and human mobility status. Design: A retrospective cross-sectional regression analysis via the Fama-MacBeth procedure is adopted. Setting: We use the data for COVID-19 daily symptom-onset cases for 100 Chinese cities and COVID-19 daily confirmed cases for 1,005 U.S. counties. Participants: A total of 69,498 cases in China and 740,843 cases in the U.S. are used for calculating the …
Accurate forecasts of COVID-19 is central to resource management and building strategies to deal with the epidemic. We propose a heterogeneous infection rate model with human mobility for epidemic modeling, a preliminary version of which we have successfully used during DARPA Grand Challenge 2014. By linearizing the model and using weighted least squares, our model is able to quickly adapt to changing trends and provide extremely accurate predictions of confirmed cases at the level of countries and states of the United States. We show that during the earlier part of the epidemic, using travel …
An urgent problem in controlling COVID-19 spreading is to understand the role of undocumented infection. We develop a five-state model for COVID-19, taking into account the unique features of the novel coronavirus, with key parameters determined by the government reports and mathematical optimization. Tests using data from China, South Korea, Italy, and Iran indicate that the model is capable of generating accurate prediction of the daily accumulated number of confirmed cases and is entirely suitable for real-time prediction. The drastically disparate testing and diagnostic standards/policies …
The SARS-CoV-2 pandemic has caused significant mortality and morbidity worldwide, sparing almost no community. As the disease will likely remain a threat for years to come, an understanding of the precise influences of human demographics and settlement, as well as the dynamic factors of climate, susceptible depletion, and intervention, on the spread of localized epidemics will be vital for mounting an effective response. We consider the entire set of local epidemics in the United States; a broad selection of demographic, population density, and climate factors; and local mobility data, trackin…
State government-mandated social distancing measures have helped to slow down the growth of the COVID-19 pandemic in the United States. Current predictive models of the development of COVID-19, especially after mitigation efforts, are largely based on extrapolating the data from other countries. Since most states enforced stay-at-home orders towards the end of March, their effect should be reflected in the death and infection counts at the end of April. Using the data available until April 25th, we investigate the change in the infection rate due to the mitigation efforts, and project death an…
The ongoing pandemic of Coronavirus disease (COVID-19) emerged in Wuhan, China in the end of 2019. It has already affected more than 300,000 people, with the number of deaths nearing 13000 across the world. As it has been posing a huge threat to global public health, it is of utmost importance to identify the rate at which the disease is spreading. In this study, we propose a time series model to analyze the trend pattern of the incidence of COVID-19 outbreak. We also incorporate information on total or partial lockdown, wherever available, into the model. The model is concise in structure, an…
A great variety of complex physical, natural and artificial systems are governed by statistical distributions, which often follow a standard exponential function in the bulk, while their tail obeys the Pareto power law. The recently introduced $κ$-statistics framework predicts distribution functions with this feature. A growing number of applications in different fields of investigation are beginning to prove the relevance and effectiveness of $κ$-statistics in fitting empirical data. In this paper, we use $κ$-statistics to formulate a statistical approach for epidemiological analysis. We vali…
COVID-19 has spread from China across Europe and the United States and has become a global pandemic. In countries of the Global South, due to often weaker socioeconomic options and health care systems, effective local countermeasures remain debated. We combine large-scale socioeconomic and traffic survey data with detailed agent-based simulations of local transportation to analyze COVID-19 spreading in a regional model for the Nelson Mandela Bay Municipality in South Africa under a range of countermeasure scenarios. The simulations indicate that any realistic containment strategy, including th…
