Graph convolution networks (GCN) are increasingly popular in many applications, yet remain notoriously hard to train over large graph datasets. They need to compute node representations recursively from their neighbors. Current GCN training algorithms suffer from either high computational costs that grow exponentially with the number of layers, or high memory usage for loading the entire graph and node embeddings. In this paper, we propose a novel efficient layer-wise training framework for GCN (L-GCN), that disentangles feature aggregation and feature transformation during training, hence greatly reducing time and memory complexities. We present theoretical analysis for L-GCN under the graph isomorphism framework, that L-GCN leads to as powerful GCNs as the more costly conventional training algorithm does, under mild conditions. We further propose L$^2$-GCN, which learns a controller for each layer that can automatically adjust the training epochs per layer in L-GCN. Experiments show that L-GCN is faster than state-of-the-arts by at least an order of magnitude, with a consistent of memory usage not dependent on dataset size, while maintaining comparable prediction performance. With the learned controller, L$^2$-GCN can further cut the training time in half. Our codes are available at https://github.com/Shen-Lab/L2-GCN.
Renmin University of China（中国人民大学）；Fudan University（复旦大学）；Alibaba Group（阿里巴巴集团）
Graph convolutional networks (GCNs) are a powerful deep learning approach for graph-structured data. Recently, GCNs and subsequent variants have shown superior performance in various application areas on real-world datasets. Despite their success, most of the current GCN models are shallow, due to the {\em over-smoothing} problem. In this paper, we study the problem of designing and analyzing deep graph convolutional networks. We propose the GCNII, an extension of the vanilla GCN model with two simple yet effective techniques: {\em Initial residual} and {\em Identity mapping}. We provide theor…
The Hong Kong Polytechnic University（香港理工大学）；ETH Zurich（苏黎世联邦理工学院）
Many interesting problems in machine learning are being revisited with new deep learning tools. For graph-based semisupervised learning, a recent important development is graph convolutional networks (GCNs), which nicely integrate local vertex features and graph topology in the convolutional layers. Although the GCN model compares favorably with other state-of-the-art methods, its mechanisms are not clear and it still requires a considerable amount of labeled data for validation and model selection. In this paper, we develop deeper insights into the GCN model and address its fundamental limits…
Central South University（中南大学）；Georgia Institute of Technology（佐治亚理工学院）；Peking University（北京大学）；Zhejiang University（浙江大学）
Accurate and real-time traffic forecasting plays an important role in the Intelligent Traffic System and is of great significance for urban traffic planning, traffic management, and traffic control. However, traffic forecasting has always been considered an open scientific issue, owing to the constraints of urban road network topological structure and the law of dynamic change with time, namely, spatial dependence and temporal dependence. To capture the spatial and temporal dependence simultaneously, we propose a novel neural network-based traffic forecasting method, the temporal graph convolu…
Peking University（北京大学）；Beijing Institute of Big Data Research (BIBDR)（北京大数据研究院）
The effectiveness of Graph Convolutional Networks (GCNs) has been demonstrated in a wide range of graph-based machine learning tasks. However, the update of parameters in GCNs is only from labeled nodes, lacking the utilization of unlabeled data. In this paper, we apply Virtual Adversarial Training (VAT), an adversarial regularization method based on both labeled and unlabeled data, on the supervised loss of GCN to enhance its generalization performance. By imposing virtually adversarial smoothness on the posterior distribution in semi-supervised learning, VAT yields improvement on the Symmetr…
Mila – Quebec AI Institute（米拉-魁北克人工智能研究所）；Université de Montréal（蒙特利尔大学）
Graph convolutional networks (GCNs) have shown promising results in processing graph data by extracting structure-aware features. This gave rise to extensive work in geometric deep learning, focusing on designing network architectures that ensure neuron activations conform to regularity patterns within the input graph. However, in most cases the graph structure is only accounted for by considering the similarity of activations between adjacent nodes, which limits the capabilities of such methods to discriminate between nodes in a graph. Here, we propose to augment conventional GCNs with geomet…
National University of Singapore（新加坡国立大学）；University of Science and Technology of China（中国科学技术大学）；Nanyang Technological University（南洋理工大学）
Graph Convolutional Network (GCN) is an emerging technique that performs learning and reasoning on graph data. It operates feature learning on the graph structure, through aggregating the features of the neighbor nodes to obtain the embedding of each target node. Owing to the strong representation power, recent research shows that GCN achieves state-of-the-art performance on several tasks such as recommendation and linked document classification. Despite its effectiveness, we argue that existing designs of GCN forgo modeling cross features, making GCN less effective for tasks or data where cro…
Accurate real-time traffic forecasting is a core technological problem against the implementation of the intelligent transportation system. However, it remains challenging considering the complex spatial and temporal dependencies among traffic flows. In the spatial dimension, due to the connectivity of the road network, the traffic flows between linked roads are closely related. In terms of the temporal factor, although there exists a tendency among adjacent time points in general, the importance of distant past points is not necessarily smaller than that of recent past points since traffic fl…
Recently, a considerable literature has grown up around the theme of Graph Convolutional Network (GCN). How to effectively leverage the rich structural information in complex graphs, such as knowledge graphs with heterogeneous types of entities and relations, is a primary open challenge in the field. Most GCN methods are either restricted to graphs with a homogeneous type of edges (e.g., citation links only), or focusing on representation learning for nodes only instead of jointly propagating and updating the embeddings of both nodes and edges for target-driven objectives. This paper addresses…
Sberbank（俄罗斯联邦储蓄银行）；Skolkovo Institute of Science and Technology（斯科尔科沃科学技术研究院）
In this paper, we discuss how modern deep learning approaches can be applied to the credit scoring of bank clients. We show that information about connections between clients based on money transfers between them allows us to significantly improve the quality of credit scoring compared to the approaches using information about the target client solely. As a final solution, we develop a new graph neural network model EWS-GCN that combines ideas of graph convolutional and recurrent neural networks via attention mechanism. The resulting model allows for robust training and efficient processing of…
Rutgers University - New Brunswick（罗格斯大学-新不伦瑞克分校）；Department of Computer Science（计算机科学系）
Applying Global Self-attention (GSA) mechanism over features has achieved remarkable success on Convolutional Neural Networks (CNNs). However, it is not clear if Graph Convolutional Networks (GCNs) can similarly benefit from such a technique. In this paper, inspired by the similarity between CNNs and GCNs, we study the impact of the Global Self-attention mechanism on GCNs. We find that consistent with the intuition, the GSA mechanism allows GCNs to capture feature-based vertex relations regardless of edge connections; As a result, the GSA mechanism can introduce extra expressive power to the G…
Self-supervision as an emerging technique has been employed to train convolutional neural networks (CNNs) for more transferrable, generalizable, and robust representation learning of images. Its introduction to graph convolutional networks (GCNs) operating on graph data is however rarely explored. In this study, we report the first systematic exploration and assessment of incorporating self-supervision into GCNs. We first elaborate three mechanisms to incorporate self-supervision into GCNs, analyze the limitations of pretraining & finetuning and self-training, and proceed to focus on multi-tas…
The Pennsylvania State University（宾夕法尼亚州立大学）；Michigan State University（密歇根州立大学）；IBM T.J. Watson（IBM T.J. Watson 研究院）
Graph Convolutional Networks (GCNs) show promising results for semi-supervised learning tasks on graphs, thus become favorable comparing with other approaches. Despite the remarkable success of GCNs, it is difficult to train GCNs with insufficient supervision. When labeled data are limited, the performance of GCNs becomes unsatisfying for low-degree nodes. While some prior work analyze successes and failures of GCNs on the entire model level, profiling GCNs on individual node level is still underexplored. In this paper, we analyze GCNs in regard to the node degree distribution. From empirical …
The application of machine learning techniques in the setting of road networks holds the potential to facilitate many important intelligent transportation applications. Graph Convolutional Networks (GCNs) are neural networks that are capable of leveraging the structure of a network. However, many implicit assumptions of GCNs do not apply to road networks. We introduce the Relational Fusion Network (RFN), a novel type of GCN designed specifically for road networks. In particular, we propose methods that outperform state-of-the-art GCNs by 21%-40% on two machine learning tasks in road networks. …
Univ. of Minnesota（明尼苏达大学）；Digital Tech. Center（数字技术中心）
Graph convolutional networks (GCNs) are vulnerable to perturbations of the graph structure that are either random, or, adversarially designed. The perturbed links modify the graph neighborhoods, which critically affects the performance of GCNs in semi-supervised learning (SSL) tasks. Aiming at robustifying GCNs conditioned on the perturbed graph, the present paper generates multiple auxiliary graphs, each having its binary 0-1 edge weights flip values with probabilities designed to enhance robustness. The resultant edge-dithered auxiliary graphs are leveraged by an adaptive (A)GCN that perform…
Label Propagation (LPA) and Graph Convolutional Neural Networks (GCN) are both message passing algorithms on graphs. Both solve the task of node classification but LPA propagates node label information across the edges of the graph, while GCN propagates and transforms node feature information. However, while conceptually similar, theoretical relation between LPA and GCN has not yet been investigated. Here we study the relationship between LPA and GCN in terms of two aspects: (1) feature/label smoothing where we analyze how the feature/label of one node is spread over its neighbors; And, (2) fe…
Jagiellonian University（雅盖隆大学）；University of Cambridge（剑桥大学）
Graph Convolutional Networks (GCNs) have recently become the primary choice for learning from graph-structured data, superseding hash fingerprints in representing chemical compounds. However, GCNs lack the ability to take into account the ordering of node neighbors, even when there is a geometric interpretation of the graph vertices that provides an order based on their spatial positions. To remedy this issue, we propose Spatial Graph Convolutional Network (SGCN) which uses spatial features to efficiently learn from graphs that can be naturally located in space. Our contribution is threefold: …
This paper aims at studying the sample complexity of graph convolutional networks (GCNs), by providing tight upper bounds of Rademacher complexity for GCN models with a single hidden layer. Under regularity conditions, theses derived complexity bounds explicitly depend on the largest eigenvalue of graph convolution filter and the degree distribution of the graph. Again, we provide a lower bound of Rademacher complexity for GCNs to show optimality of our derived upper bounds. Taking two commonly used examples as representatives, we discuss the implications of our results in designing graph conv…
Southern Methodist University（南卫理公会大学）；Lawrence Berkeley National Laboratory（劳伦斯伯克利国家实验室）；University of Texas at Dallas（德克萨斯大学达拉斯分校）；NASA Jet Propulsion Laboratory（美国国家航空航天局喷气推进实验室）
There recently has been a surge of interest in developing a new class of deep learning (DL) architectures that integrate an explicit time dimension as a fundamental building block of learning and representation mechanisms. In turn, many recent results show that topological descriptors of the observed data, encoding information on the shape of the dataset in a topological space at different scales, that is, persistent homology of the data, may contain important complementary information, improving both performance and robustness of DL. As convergence of these two emerging ideas, we propose to e…
Huazhong University of Science and Technology（华中科技大学）
Deep learning models for graphs, especially Graph Convolutional Networks (GCNs), have achieved remarkable performance in the task of semi-supervised node classification. However, recent studies show that GCNs suffer from adversarial perturbations. Such vulnerability to adversarial attacks significantly decreases the stability of GCNs when being applied to security-critical applications. Defense methods such as preprocessing, attention mechanism and adversarial training have been discussed by various studies. While being able to achieve desirable performance when the perturbation rates are low,…
Guangdong University of Finance & Economics（广东财经大学）
Graph convolutional networks (GCNs) have achieved remarkable learning ability for dealing with various graph structural data recently. In general, deep GCNs do not work well since graph convolution in conventional GCNs is a special form of Laplacian smoothing, which makes the representation of different nodes indistinguishable. In the literature, multi-scale information was employed in GCNs to enhance the expressive power of GCNs. However, over-smoothing phenomenon as a crucial issue of GCNs remains to be solved and investigated. In this paper, we propose two novel multi-scale GCN frameworks b…
Purdue University（普渡大学）；Beijing University of Technology（北京工业大学）；Georgia Institute of Technology（佐治亚理工学院）
This study proposes a novel Graph Convolutional Neural Network with Data-driven Graph Filter (GCNN-DDGF) model that can learn hidden heterogeneous pairwise correlations between stations to predict station-level hourly demand in a large-scale bike-sharing network. Two architectures of the GCNN-DDGF model are explored; GCNNreg-DDGF is a regular GCNN-DDGF model which contains the convolution and feedforward blocks, and GCNNrec-DDGF additionally contains a recurrent block from the Long Short-term Memory neural network architecture to capture temporal dependencies in the bike-sharing demand series.…
Graph convolutional networks (GCNs) have gained popularity due to high performance achievable on several downstream tasks including node classification. Several architectural variants of these networks have been proposed and investigated with experimental studies in the literature. Motivated by a recent work on simplifying GCNs, we study the problem of designing other variants and propose a framework to compose networks using building blocks of GCN. The framework offers flexibility to compose and evaluate different networks using feature and/or label propagation networks, linear or non-linear …
Elliptic；The University of Sheffield（谢菲尔德大学）；Telecom SudParis（南巴黎电信学院）；Polytechnic Institute of Paris（巴黎综合理工学院）
We show that a modification of the first layer of a Graph Convolutional Network (GCN) can be used to effectively propagate label information across neighbor nodes, for binary and multi-class classification problems. This is done by selectively eliminating self-loops for the label features during the training phase of a GCN. The GCN architecture is otherwise unchanged, without any extra hyper-parameters, and can be used in both a transductive and inductive setting. We show through several experiments that, depending on how many labels are available during the inference phase, this strategy can …
Beijing National Research Center for Information Science and Technology (BNRist)（北京信息科学与技术国家研究中心）；Tsinghua University（清华大学）；Tencent AI Lab（腾讯人工智能实验室）
Increasing the depth of GCN, which is expected to permit more expressivity, is shown to incur performance detriment especially on node classification. The main cause of this lies in over-smoothing. The over-smoothing issue drives the output of GCN towards a space that contains limited distinguished information among nodes, leading to poor expressivity. Several works on refining the architecture of deep GCN have been proposed, but it is still unknown in theory whether or not these refinements are able to relieve over-smoothing. In this paper, we first theoretically analyze how general GCNs act …
Indian Institute of Science（印度科学研究所）；Conduent Labs（康维恩实验室）
Semi-supervised learning on graph structured data has received significant attention with the recent introduction of Graph Convolution Networks (GCN). While traditional methods have focused on optimizing a loss augmented with Laplacian regularization framework, GCNs perform an implicit Laplacian type regularization to capture local graph structure. In this work, we propose Lovasz Convolutional Network (LCNs) which are capable of incorporating global graph properties. LCNs achieve this by utilizing Lovasz's orthonormal embeddings of the nodes. We analyse local and global properties of graphs an…
The Chinese University of Hong Kong（香港中文大学）；Hong Kong University of Science and Technology（香港科技大学）；Tencent（腾讯）
We propose a new STAcked and Reconstructed Graph Convolutional Networks (STAR-GCN) architecture to learn node representations for boosting the performance in recommender systems, especially in the cold start scenario. STAR-GCN employs a stack of GCN encoder-decoders combined with intermediate supervision to improve the final prediction performance. Unlike the graph convolutional matrix completion model with one-hot encoding node inputs, our STAR-GCN learns low-dimensional user and item latent factors as the input to restrain the model space complexity. Moreover, our STAR-GCN can produce node e…
Beihang University（北京航空航天大学）；Alibaba Group（阿里巴巴集团）；Jinan University（暨南大学）；CUHK（香港中文大学）；Tsinghua University（清华大学）；Nanjing University of Aeronautics and Astronautics（南京航空航天大学）；Wechat, Tencent Inc.（腾讯公司微信）
Recent advances in Graph Convolutional Networks (GCNs) have led to state-of-the-art performance on various graph-related tasks. However, most existing GCN models do not explicitly identify whether all the aggregated neighbors are valuable to the learning tasks, which may harm the learning performance. In this paper, we consider the problem of node classification and propose the Label-Aware Graph Convolutional Network (LAGCN) framework which can directly identify valuable neighbors to enhance the performance of existing GCN models. Our contribution is three-fold. First, we propose a label-aware…
Graph convolutional neural networks (GCNs) embed nodes in a graph into Euclidean space, which has been shown to incur a large distortion when embedding real-world graphs with scale-free or hierarchical structure. Hyperbolic geometry offers an exciting alternative, as it enables embeddings with much smaller distortion. However, extending GCNs to hyperbolic geometry presents several unique challenges because it is not clear how to define neural network operations, such as feature transformation and aggregation, in hyperbolic space. Furthermore, since input features are often Euclidean, it is unc…
Indian Institute of Space Science and Technology（印度空间科学与技术研究所）
Graph convolutional neural networks (GCNNs) have been widely used in graph learning. It has been observed that the smoothness functional on graphs can be defined in terms of the graph Laplacian. This fact points out in the direction of using Laplacian in deriving regularization operators on graphs and its consequent use with spectral GCNN filter designs. In this work, we explore the regularization properties of graph Laplacian and proposed a generalized framework for regularized filter designs in spectral GCNNs. We found that the filters used in many state-of-the-art GCNNs can be derived as a …
Nanjing University of Science and Technology（南京理工大学）
Graph convolutional networks (GCNs) have shown the powerful ability in text structure representation and effectively facilitate the task of text classification. However, challenges still exist in adapting GCN on learning discriminative features from texts due to the main issue of graph variants incurred by the textual complexity and diversity. In this paper, we propose a dual-attention GCN to model the structural information of various texts as well as tackle the graph-invariant problem through embedding two types of attention mechanisms, i.e. the connection-attention and hop-attention, into t…
Recently, Graph Convolutional Networks (GCNs) and their variants have been receiving many research interests for learning graph-related tasks. While the GCNs have been successfully applied to this problem, some caveats inherited from classical deep learning still remain as open research topics in the context of the node classification problem. One such inherited caveat is that GCNs only consider the nodes that are a few propagations away from the labeled nodes to classify them. However, taking only a few propagation steps away nodes into account defeats the purpose of using the graph topologic…
National University of Singapore（新加坡国立大学）；PayPal Innovation Lab（PayPal创新实验室）；Alibaba Group（阿里巴巴集团）
A Graph Convolutional Network (GCN) stacks several layers and in each layer performs a PROPagation operation (PROP) and a TRANsformation operation (TRAN) for learning node representations over graph-structured data. Though powerful, GCNs tend to suffer performance drop when the model gets deep. Previous works focus on PROPs to study and mitigate this issue, but the role of TRANs is barely investigated. In this work, we study performance degradation of GCNs by experimentally examining how stacking only TRANs or PROPs works. We find that TRANs contribute significantly, or even more than PROPs, t…
$G$-equivariant convolutional neural networks (GCNNs) is a geometric deep learning model for data defined on a homogeneous $G$-space $\mathcal{M}$. GCNNs are designed to respect the global symmetry in $\mathcal{M}$, thereby facilitating learning. In this paper, we analyze GCNNs on homogeneous spaces $\mathcal{M} = G/K$ in the case of unimodular Lie groups $G$ and compact subgroups $K \leq G$. We demonstrate that homogeneous vector bundles is the natural setting for GCNNs. We also use reproducing kernel Hilbert spaces to obtain a precise criterion for expressing $G$-equivariant layers as convol…
Molecular structure-property relationships are key to molecular engineering for materials and drug discovery. The rise of deep learning offers a new viable solution to elucidate the structure-property relationships directly from chemical data. Here we show that the performance of graph convolutional networks (GCNs) for the prediction of molecular properties can be improved by incorporating attention and gate mechanisms. The attention mechanism enables a GCN to identify atoms in different environments. The gated skip-connection further improves the GCN by updating feature maps at an appropriate…
Graph Convolutional Networks (GCNs) have attracted more and more attentions in recent years. A typical GCN layer consists of a linear feature propagation step and a nonlinear transformation step. Recent works show that a linear GCN can achieve comparable performance to the original non-linear GCN while being much more computationally efficient. In this paper, we dissect the feature propagation steps of linear GCNs from a perspective of continuous graph diffusion, and analyze why linear GCNs fail to benefit from more propagation steps. Following that, we propose Decoupled Graph Convolution (DGC…
Wuhan University（武汉大学）；Shanghai Jiao Tong University（上海交通大学）；University of New South Wales（新南威尔士大学）；Harbin Institute of Technology（哈尔滨工业大学）；Mohamed bin Zayed University of AI（穆罕默德·本·扎耶德人工智能大学）
The research for characterizing GNN expressiveness attracts much attention as graph neural networks achieve a champion in the last five years. The number of linear regions has been considered a good measure for the expressivity of neural networks with piecewise linear activation. In this paper, we present some estimates for the number of linear regions of the classic graph convolutional networks (GCNs) with one layer and multiple-layer scenarios. In particular, we obtain an optimal upper bound for the maximum number of linear regions for one-layer GCNs, and the upper and lower bounds for multi…
Graph convolutional networks (GCNs) are a family of neural network models that perform inference on graph data by interleaving vertex-wise operations and message-passing exchanges across nodes. Concerning the latter, two key questions arise: (i) how to design a differentiable exchange protocol (e.g., a 1-hop Laplacian smoothing in the original GCN), and (ii) how to characterize the trade-off in complexity with respect to the local updates. In this paper, we show that state-of-the-art results can be achieved by adapting the number of communication steps independently at every node. In particula…
National Taiwan University（国立台湾大学）；University of California, Los Angeles（加州大学洛杉矶分校）；Google Research（谷歌研究院）
Graph convolutional network (GCN) has been successfully applied to many graph-based applications; however, training a large-scale GCN remains challenging. Current SGD-based algorithms suffer from either a high computational cost that exponentially grows with number of GCN layers, or a large space requirement for keeping the entire graph and the embedding of each node in memory. In this paper, we propose Cluster-GCN, a novel GCN algorithm that is suitable for SGD-based training by exploiting the graph clustering structure. Cluster-GCN works as the following: at each step, it samples a block of …
Graph neural networks (GNNs) have gained traction over the past few years for their superior performance in numerous machine learning tasks. Graph Convolutional Neural Networks (GCN) are a common variant of GNNs that are known to have high performance in semi-supervised node classification (SSNC), and work well under the assumption of homophily. Recent literature has highlighted that GCNs can achieve strong performance on heterophilous graphs under certain "special conditions". These arguments motivate us to understand why, and how, GCNs learn to perform SSNC. We find a positive correlation be…
Huawei（华为）；École Polytechnique（巴黎综合理工学院）；Institute Polytechnique de Paris（巴黎理工学院）；AUEB（雅典经济与商业大学）
The robustness of the much-used Graph Convolutional Networks (GCNs) to perturbations of their input is becoming a topic of increasing importance. In this paper, the random GCN is introduced for which a random matrix theory analysis is possible. This analysis suggests that if the graph is sufficiently perturbed, or in the extreme case random, then the GCN fails to benefit from the node features. It is furthermore observed that enhancing the message passing step in GCNs by adding the node feature kernel to the adjacency matrix of the graph structure solves this problem. An empirical study of a G…
Important advances have been made using convolutional neural network (CNN) approaches to solve complicated problems in areas that rely on grid structured data such as image processing and object classification. Recently, research on graph convolutional neural networks (GCNN) has increased dramatically as researchers try to replicate the success of CNN for graph structured data. Unfortunately, traditional CNN methods are not readily transferable to GCNN, given the irregularity and geometric complexity of graphs. The emerging field of GCNN is further complicated by research papers that differ gr…
Graph convolutional networks(GCNs) have become the most popular approaches for graph data in these days because of their powerful ability to extract features from graph. GCNs approaches are divided into two categories, spectral-based and spatial-based. As the earliest convolutional networks for graph data, spectral-based GCNs have achieved impressive results in many graph related analytics tasks. However, spectral-based models cannot directly work on directed graphs. In this paper, we propose an improved spectral-based GCN for the directed graph by leveraging redefined Laplacians to improve it…
Beijing Institute of Technology（北京理工大学）；Renmin University of China（中国人民大学）
Graph convolutional networks (GCNs) have achieved promising performance on various graph-based tasks. However they suffer from over-smoothing when stacking more layers. In this paper, we present a quantitative study on this observation and develop novel insights towards the deeper GCN. First, we interpret the current graph convolutional operations from an optimization perspective and argue that over-smoothing is mainly caused by the naive first-order approximation of the solution to the optimization problem. Subsequently, we introduce two metrics to measure the over-smoothing on node-level tas…
Beihang University（北京航空航天大学）；Hebei University of Technology（河北工业大学）
Graph Neural Networks (GNNs) have achieved tremendous success in graph representation learning. Unfortunately, current GNNs usually rely on loading the entire attributed graph into network for processing. This implicit assumption may not be satisfied with limited memory resources, especially when the attributed graph is large. In this paper, we pioneer to propose a Binary Graph Convolutional Network (Bi-GCN), which binarizes both the network parameters and input node features. Besides, the original matrix multiplications are revised to binary operations for accelerations. According to the theo…
Predicting DNA-protein binding is an important and classic problem in bioinformatics. Convolutional neural networks have outperformed conventional methods in modeling the sequence specificity of DNA-protein binding. However, none of the studies has utilized graph convolutional networks for motif inference. In this work, we propose to use graph convolutional networks for motif inference. We build a sequence k-mer graph for the whole dataset based on k-mer co-occurrence and k-mer sequence relationship and then learn DNA Graph Convolutional Network (DNA-GCN) for the whole dataset. Our DNA-GCN is …
Xi'an Jiaotong University（西安交通大学）；Xi'an University of Science and Technology（西安科技大学）
In representation learning on the graph-structured data, under heterophily (or low homophily), many popular GNNs may fail to capture long-range dependencies, which leads to their performance degradation. To solve the above-mentioned issue, we propose a graph convolutional networks with structure learning (GCN-SL), and furthermore, the proposed approach can be applied to node classification. The proposed GCN-SL contains two improvements: corresponding to node features and edges, respectively. In the aspect of node features, we propose an efficient-spectral-clustering (ESC) and an ESC with ancho…
Yuanpei College, Peking University（北京大学元培学院）；Key Laboratory of Machine Perception, Ministry of Education, Peking University（北京大学教育部机器感知重点实验室）
Graph Convolutional Networks (GCNs) have proved to be a most powerful architecture in aggregating local neighborhood information for individual graph nodes. Low-rank proximities and node features are successfully leveraged in existing GCNs, however, attributes that graph links may carry are commonly ignored, as almost all of these models simplify graph links into binary or scalar values describing node connectedness. In our paper instead, links are reverted to hypostatic relationships between entities with descriptional attributes. We propose GCN-LASE (GCN with Link Attributes and Sampling Est…
Harbin Institute of Technology（哈尔滨工业大学）；Peng Cheng Laboratory（鹏城实验室）
Recently, some Neural Architecture Search (NAS) techniques are proposed for the automatic design of Graph Convolutional Network (GCN) architectures. They bring great convenience to the use of GCN, but could hardly apply to the Federated Learning (FL) scenarios with distributed and private datasets, which limit their applications. Moreover, they need to train many candidate GCN models from scratch, which is inefficient for FL. To address these challenges, we propose FL-AGCNS, an efficient GCN NAS algorithm suitable for FL scenarios. FL-AGCNS designs a federated evolutionary optimization strateg…
Beijing University of Posts and Telecommunications（北京邮电大学）；Peking University（北京大学）
Graph convolutional networks (GCNs) have received considerable research attention recently. Most GCNs learn the node representations in Euclidean geometry, but that could have a high distortion in the case of embedding graphs with scale-free or hierarchical structure. Recently, some GCNs are proposed to deal with this problem in non-Euclidean geometry, e.g., hyperbolic geometry. Although hyperbolic GCNs achieve promising performance, existing hyperbolic graph operations actually cannot rigorously follow the hyperbolic geometry, which may limit the ability of hyperbolic geometry and thus hurt t…
Graph convolutional networks (GCNs) have been employed as a kind of significant tool on many graph-based applications recently. Inspired by convolutional neural networks (CNNs), GCNs generate the embeddings of nodes by aggregating the information of their neighbors layer by layer. However, the high computational and memory cost of GCNs due to the recursive neighborhood expansion across GCN layers makes it infeasible for training on large graphs. To tackle this issue, several sampling methods during the process of information aggregation have been proposed to train GCNs in a mini-batch Stochast…
\textbf{G}raph \textbf{C}onvolutional \textbf{N}etwork (\textbf{GCN}) is widely used in graph data learning tasks such as recommendation. However, when facing a large graph, the graph convolution is very computationally expensive thus is simplified in all existing GCNs, yet is seriously impaired due to the oversimplification. To address this gap, we leverage the \textit{original graph convolution} in GCN and propose a \textbf{L}ow-pass \textbf{C}ollaborative \textbf{F}ilter (\textbf{LCF}) to make it applicable to the large graph. LCF is designed to remove the noise caused by exposure and quant…
Ghent University - imec（根特大学-imec）；IDLab（互联网与数据实验室）
The inception of the Relational Graph Convolutional Network (R-GCN) marked a milestone in the Semantic Web domain as a widely cited method that generalises end-to-end hierarchical representation learning to Knowledge Graphs (KGs). R-GCNs generate representations for nodes of interest by repeatedly aggregating parameterised, relation-specific transformations of their neighbours. However, in this paper, we argue that the the R-GCN's main contribution lies in this "message passing" paradigm, rather than the learned weights. To this end, we introduce the "Random Relational Graph Convolutional Netw…
Rice University（莱斯大学）；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Pacific Northwest National Laboratory（太平洋西北国家实验室）
Graph Convolutional Networks (GCNs) have emerged as the state-of-the-art method for graph-based learning tasks. However, training GCNs at scale is still challenging, hindering both the exploration of more sophisticated GCN architectures and their applications to real-world large graphs. While it might be natural to consider graph partition and distributed training for tackling this challenge, this direction has only been slightly scratched the surface in the previous works due to the limitations of existing designs. In this work, we first analyze why distributed GCN training is ineffective and…
Sichuan University（四川大学）；Huazhong University of Science and Technology（华中科技大学）；Delft University of Technology（代尔夫特理工大学）
Recent studies have revealed the vulnerability of graph convolutional networks (GCNs) to edge-perturbing attacks, such as maliciously inserting or deleting graph edges. However, a theoretical proof of such vulnerability remains a big challenge, and effective defense schemes are still open issues. In this paper, we first generalize the formulation of edge-perturbing attacks and strictly prove the vulnerability of GCNs to such attacks in node classification tasks. Following this, an anonymous graph convolutional network, named AN-GCN, is proposed to counter against edge-perturbing attacks. Speci…
Inspired by convolutional neural networks on 1D and 2D data, graph convolutional neural networks (GCNNs) have been developed for various learning tasks on graph data, and have shown superior performance on real-world datasets. Despite their success, there is a dearth of theoretical explorations of GCNN models such as their generalization properties. In this paper, we take a first step towards developing a deeper theoretical understanding of GCNN models by analyzing the stability of single-layer GCNN models and deriving their generalization guarantees in a semi-supervised graph learning setting…
