Ontologies of research areas have been proven to be useful in many application for analysing and making sense of scholarly data. In this chapter, we present the Computer Science Ontology (CSO), which is the largest ontology of research areas in the field of Computer Science, and discuss a number of applications that build on CSO, to support high-level tasks, such as topic classification, metadata extraction, and recommendation of books.
Classifying research papers according to their research topics is an important task to improve their retrievability, assist the creation of smart analytics, and support a variety of approaches for analysing and making sense of the research environment. In this paper, we present the CSO Classifier, a new unsupervised approach for automatically classifying research papers according to the Computer Science Ontology (CSO), a comprehensive ontology of re-search areas in the field of Computer Science. The CSO Classifier takes as input the metadata associated with a research paper (title, abstract, k…
Developing and organizing new knowledge is a core activity for scholars. Recently, ontologies have been introduced as an approach for organizing knowledge. However, most ontologies do not readily support the development and organization of new knowledge. By comparison, to ontology, epistemology is the study of what can be known. Aspects of epistemology include the acquisition of and justification for new knowledge. Thus, we need to coordinate ontology with epistemology. Because we are developing frameworks for capturing knowledge across several scholarly domains, we describe the work in this p…
The Science Data Lake: A Unified Open Infrastructure Integrating 293 Million Papers Across Eight Scholarly Sources with Embedding-Based Ontology Alignment
Karlsruhe Institute of Technology (KIT)（卡尔斯鲁厄理工学院）；University of Stuttgart（斯图加特大学）
Citation information in scholarly data is an important source of insight into the reception of publications and the scholarly discourse. Outcomes of citation analyses and the applicability of citation based machine learning approaches heavily depend on the completeness of such data. One particular shortcoming of scholarly data nowadays is that non-English publications are often not included in data sets, or that language metadata is not available. Because of this, citations between publications of differing languages (cross-lingual citations) have only been studied to a very limited degree. In…
Knowledge graphs represent the meaning of properties of real-world entities and relationships among them in a natural way. Exploiting semantics encoded in knowledge graphs enables the implementation of knowledge-driven tasks such as semantic retrieval, query processing, and question answering, as well as solutions to knowledge discovery tasks including pattern discovery and link prediction. In this paper, we tackle the problem of knowledge discovery in scholarly knowledge graphs, i.e., graphs that integrate scholarly data, and present Korona, a knowledge-driven framework able to unveil scholar…
In this study we analyse the key driving factors of preprints in enhancing scholarly communication. To this end we use four groups of metrics, one referring to scholarly communication and based on bibliometric indicators (Web of Science and Scopus citations), while the others reflect usage (usage counts in Web of Science), capture (Mendeley readers) and social media attention (Tweets). Hereby we measure two effects associated with preprint publishing: publication delay and impact. We define and use several indicators to assess the impact of journal articles with previous preprint versions in a…
Trinity College Dublin（都柏林圣三一学院）；National Institute of Informatics Tokyo（东京国立信息学研究所）；University of Stuttgart（斯图加特大学）；Technical University of Munich（慕尼黑工业大学）；The Open University（开放大学）
We introduce the first 'living lab' for scholarly recommender systems. This lab allows recommender-system researchers to conduct online evaluations of their novel algorithms for scholarly recommendations, i.e., recommendations for research papers, citations, conferences, research grants, etc. Recommendations are delivered through the living lab's API to platforms such as reference management software and digital libraries. The living lab is built on top of the recommender-system as-a-service Mr. DLib. Current partners are the reference management software JabRef and the CORE research team. We …
The advantages of data sharing across organizations and disciplines are indisputable; although, sensitive and restricted data cannot be easily shared due to policies and legal matters. The research presented in this paper takes a step toward systematizing the sharing of sensitive and restricted research data by developing an ontology to frame and guide DSUA (Data Sharing and Usage Agreement) development. The paper provides background context, describes the ontology creation process, and introduces the Data Sharing Agreements for Restricted and Sensitive Information (DARSI) ontology. DARSI cont…
Stanford University（斯坦福大学）；Graz University of Technology（格拉茨技术大学）；GESIS（莱布尼茨社会科学研究所）；University of Koblenz-Landau（科布伦茨-兰道大学）
Ontologies in the biomedical domain are numerous, highly specialized and very expensive to develop. Thus, a crucial prerequisite for ontology adoption and reuse is effective support for exploring and finding existing ontologies. Towards that goal, the National Center for Biomedical Ontology (NCBO) has developed BioPortal---an online repository designed to support users in exploring and finding more than 500 existing biomedical ontologies. In 2016, BioPortal represents one of the largest portals for exploration of semantic biomedical vocabularies and terminologies, which is used by many researc…
At this time, developers of research information systems are experimenting with new tools for research outputs usage that can expand the open access to research. These tools allow researchers to record research as annotations, nanopublications or other micro research outputs and link them by scientific relationships. If these micro outputs and relationships are shared by their creators publicly, these actions can initiate direct scholarly communication between the creators and the authors of the used research outputs. Such direct communication takes place while researchers are manipulating and…
Measures for research activity and impact have become an integral ingredient in the assessment of a wide range of entities (individual researchers, organizations, instruments, regions, disciplines). Traditional bibliometric indicators, like publication and citation based indicators, provide an essential part of this picture, but cannot describe the complete picture. Since reading scholarly publications is an essential part of the research life cycle, it is only natural to introduce measures for this activity in attempts to quantify the efficiency, productivity and impact of an entity. Citation…
In recent decades, there has been a major shift towards improved digital access to scholarly works. However, even now that these works are available in digital form, they remain document-based, making it difficult to communicate the knowledge they contain. The next logical step is to extend these works with more flexible, fine-grained, semantic, and context-sensitive representations of scholarly knowledge. The Open Research Knowledge Graph (ORKG) is a platform that structures and interlinks scholarly knowledge, relying on crowdsourced contributions from researchers (as a crowd) to acquire, cur…
Indiana University（印第安纳大学）；University of Pittsburgh（匹兹堡大学）；National Institutes of Health（美国国立卫生研究院）；Washington University（华盛顿大学）；University of Florida（佛罗里达大学）；Vanderbilt University（范德堡大学）；Stanford University（斯坦福大学）；Harvard Medical School（哈佛医学院）
The National Institutes of Health's (NIH) Human Biomolecular Atlas Program (HuBMAP) aims to create a comprehensive high-resolution atlas of all the cells in the healthy human body. Multiple laboratories across the United States are collecting tissue specimens from different organs of donors who vary in sex, age, and body size. Integrating and harmonizing the data derived from these samples and 'mapping' them into a common three-dimensional (3D) space is a major challenge. The key to making this possible is a 'Common Coordinate Framework' (CCF), which provides a semantically annotated, 3D refer…
Graz University of Technology（格拉茨工业大学）；GESIS - Leibniz Institute for the Social Sciences（GESIS——莱布尼茨社会科学研究所）；University of Koblenz-Landau（科布伦茨-兰道大学）；Stanford University（斯坦福大学）
Biomedical taxonomies, thesauri and ontologies in the form of the International Classification of Diseases (ICD) as a taxonomy or the National Cancer Institute Thesaurus as an OWL-based ontology, play a critical role in acquiring, representing and processing information about human health. With increasing adoption and relevance, biomedical ontologies have also significantly increased in size. For example, the 11th revision of the ICD, which is currently under active development by the WHO contains nearly 50,000 classes representing a vast variety of different diseases and causes of death. This…
Scholarly communication has the scope to transcend the limitations of the physical world through social media extended coverage and shortened information paths. Accordingly, publishers have created profiles for their journals in Twitter to promote their publications and to initiate discussions with public. This paper investigates the Twitter presence of humanities and social sciences (HSS) journal titles obtained from mainstream citation indices, by analysing the interaction and communication patterns. This study utilizes webometric data collection, descriptive analysis, and social network ana…
Dot-science was launched in 2015 as a new academic top-level domain (TLD) aimed to provide 'a dedicated, easily accessible location for global Internet users with an interest in science'. The main objective of this work is to find out the general scholarly usage of this top-level domain. In particular, the following three questions are pursued: usage (number of web domains registered with the dot-science), purpose (main function and category of websites linked to these web domains), and impact (websites' visibility and authority). To do this, 13,900 domain names were gathered through ICANN's D…
