We present a novel framework that can combine multi-domain learning (MDL), data imputation (DI) and multi-task learning (MTL) to improve performance for classification and regression tasks in different domains. The core of our method is an adversarial autoencoder that can: (1) learn to produce domain-invariant embeddings to reduce the difference between domains; (2) learn the data distribution for each domain and correctly perform data imputation on missing data. For MDL, we use the Maximum Mean Discrepancy (MMD) measure to align the domain distributions. For DI, we use an adversarial approach where a generator fill in information for missing data and a discriminator tries to distinguish between real and imputed values. Finally, using the universal feature representation in the embeddings, we train a classifier using MTL that given input from any domain, can predict labels for all domains. We demonstrate the superior performance of our approach compared to other state-of-art methods in three distinct settings, DG-DI in image recognition with unstructured data, MTL-DI in grade estimation with structured data and MDMTL-DI in a selection process using mixed data.
When sensors collect spatio-temporal data in a large geographical area, the existence of missing data cannot be escaped. Missing data negatively impacts the performance of data analysis and machine learning algorithms. In this paper, we study deep autoencoders for missing data imputation in spatio-temporal problems. We propose a convolution bidirectional-LSTM for capturing spatial and temporal patterns. Moreover, we analyze an autoencoder's latent feature representation in spatio-temporal data and illustrate its performance for missing data imputation. Traffic flow data are used for evaluation…
Department of Computing Science Simon Fraser University（西蒙弗雷泽大学计算机科学系）
Missing data is a significant problem impacting all domains. State-of-the-art framework for minimizing missing data bias is multiple imputation, for which the choice of an imputation model remains nontrivial. We propose a multiple imputation model based on overcomplete deep denoising autoencoders. Our proposed model is capable of handling different data types, missingness patterns, missingness proportions and distributions. Evaluation on several real life datasets show our proposed model significantly outperforms current state-of-the-art methods under varying conditions while simultaneously im…
West University of Timisoara（蒂米什瓦拉西部大学）；University of Ljubljana（卢布尔雅那大学）
Due to complex experimental settings, missing values are common in biomedical data. To handle this issue, many methods have been proposed, from ignoring incomplete instances to various data imputation approaches. With the recent rise of deep neural networks, the field of missing data imputation has oriented towards modelling of the data distribution. This paper presents an approach based on Monte Carlo dropout within (Variational) Autoencoders which offers not only very good adaptation to the distribution of the data but also allows generation of new data, adapted to each specific instance. Th…
Dealing with missing data in data analysis is inevitable. Although powerful imputation methods that address this problem exist, there is still much room for improvement. In this study, we examined single imputation based on deep autoencoders, motivated by the apparent success of deep learning to efficiently extract useful dataset features. We have developed a consistent framework for both training and imputation. Moreover, we benchmarked the results against state-of-the-art imputation methods on different data sizes and characteristics. The work was not limited to the one-type variable dataset…
HDR UK-Turing Wellcome（英国健康数据研究中心-图灵惠康）；University of Edinburgh（爱丁堡大学）；University College London（伦敦大学学院）
Missing data persists as a major barrier to data analysis across numerous applications. Recently, deep generative models have been used for imputation of missing data, motivated by their ability to capture highly non-linear and complex relationships in the data. In this work, we investigate the ability of deep models, namely variational autoencoders (VAEs), to account for uncertainty in missing data through multiple imputation strategies. We find that VAEs provide poor empirical coverage of missing data, with underestimation and overconfident imputations, particularly for more extreme missing …
The most common strategy of imputing missing values in a table is to study either the column-column relationship or the row-row relationship of the data table, then use the relationship to impute the missing values based on the non-missing values from other columns of the same row, or from the other rows of the same column. This paper introduces a double autoencoder for imputation ($Ae^2I$) that simultaneously and collaboratively uses both row-row relationship and column-column relationship to impute the missing values. Empirical tests on Movielens 1M dataset demonstrated that $Ae^2I$ outperfo…
Gary and Mary West Health Institute（加里与玛丽·韦斯特健康研究所）
Although data may be abundant, complete data is less so, due to missing columns or rows. This missingness undermines the performance of downstream data products that either omit incomplete cases or create derived completed data for subsequent processing. Appropriately managing missing data is required in order to fully exploit and correctly use data. We propose a Multiple Imputation model using Denoising Autoencoders to learn the internal representation of data. Furthermore, we use the novel mechanisms of Metamorphic Truth and Imputation Feedback to maintain statistical integrity of attributes…
Missing value imputation is a challenging and well-researched topic in data mining. In this paper, we propose IFGAN, a missing value imputation algorithm based on Feature-specific Generative Adversarial Networks (GAN). Our idea is intuitive yet effective: a feature-specific generator is trained to impute missing values, while a discriminator is expected to distinguish the imputed values from observed ones. The proposed architecture is capable of handling different data types, data distributions, missing mechanisms, and missing rates. It also improves post-imputation analysis by preserving inte…
Yantai University（烟台大学）；East China Normal University（华东师范大学）
Datasets with missing values are very common in real world applications. GAIN, a recently proposed deep generative model for missing data imputation, has been proved to outperform many state-of-the-art methods. But GAIN only uses a reconstruction loss in the generator to minimize the imputation error of the non-missing part, ignoring the potential category information which can reflect the relationship between samples. In this paper, we propose a novel unsupervised missing data imputation method named PC-GAIN, which utilizes potential category information to further enhance the imputation powe…
University of California, Los Angeles（加利福尼亚大学洛杉矶分校）；University of Oxford（牛津大学）；Alan Turing Institute（艾伦·图灵研究所）
We propose a novel method for imputing missing data by adapting the well-known Generative Adversarial Nets (GAN) framework. Accordingly, we call our method Generative Adversarial Imputation Nets (GAIN). The generator (G) observes some components of a real data vector, imputes the missing components conditioned on what is actually observed, and outputs a completed vector. The discriminator (D) then takes a completed vector and attempts to determine which components were actually observed and which were imputed. To ensure that D forces G to learn the desired distribution, we provide D with some …
University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）
Increasing use of sensor data in intelligent transportation systems calls for accurate imputation algorithms that can enable reliable traffic management in the occasional absence of data. As one of the effective imputation approaches, generative adversarial networks (GANs) are implicit generative models that can be used for data imputation, which is formulated as an unsupervised learning problem. This work introduces a novel iterative GAN architecture, called Iterative Generative Adversarial Networks for Imputation (IGANI), for data imputation. IGANI imputes data in two steps and maintains the…
Missing data is one of the most common preprocessing problems. In this paper, we experimentally research the use of generative and non-generative models for feature reconstruction. Variational Autoencoder with Arbitrary Conditioning (VAEAC) and Generative Adversarial Imputation Network (GAIN) were researched as representatives of generative models, while the denoising autoencoder (DAE) represented non-generative models. Performance of the models is compared to traditional methods k-nearest neighbors (k-NN) and Multiple Imputation by Chained Equations (MICE). Moreover, we introduce WGAIN as the…
Many studies have attempted to solve the problem of missing data using various approaches. Among them, Generative Adversarial Imputation Nets (GAIN) was first used to impute data with Generative Adversarial Nets (GAN) and good results were obtained. Subsequent studies have attempted to combine various approaches to address some of its limitations. ClueGAIN is first proposed in this study, which introduces transfer learning into GAIN to solve the problem of poor imputation performance in high missing rate data sets. ClueGAIN can also be used to measure the similarity between data sets to explor…
Missing data is a common problem faced with real-world datasets. Imputation is a widely used technique to estimate the missing data. State-of-the-art imputation approaches, such as Generative Adversarial Imputation Nets (GAIN), model the distribution of observed data to approximate the missing values. Such an approach usually models a single distribution for the entire dataset, which overlooks the class-specific characteristics of the data. Class-specific characteristics are especially useful when there is a class imbalance. We propose a new method for imputing missing data based on its class-…
SunPower Corporation（SunPower公司）；SolarEdge Technologies（SolarEdge科技公司）；Case Western Reserve University（凯斯西储大学）；C2 Energy Capital（C2能源资本公司）；Sandia National Labs（桑迪亚国家实验室）
The integration of the global Photovoltaic (PV) market with real time data-loggers has enabled large scale PV data analytical pipelines for power forecasting and long-term reliability assessment of PV fleets. Nevertheless, the performance of PV data analysis heavily depends on the quality of PV timeseries data. This paper proposes a novel Spatio-Temporal Denoising Graph Autoencoder (STD-GAE) framework to impute missing PV Power Data. STD-GAE exploits temporal correlation, spatial coherence, and value dependencies from domain knowledge to recover missing data. Experimental results show that STD…
Learning from heterogeneous data poses challenges such as combining data from various sources and of different types. Meanwhile, heterogeneous data are often associated with missingness in real-world applications due to heterogeneity and noise of input sources. In this work, we propose the variational selective autoencoder (VSAE), a general framework to learn representations from partially-observed heterogeneous data. VSAE learns the latent dependencies in heterogeneous data by modeling the joint distribution of observed data, unobserved data, and the imputation mask which represents how the d…
Missing data are present in most real world problems and need careful handling to preserve the prediction accuracy and statistical consistency in the downstream analysis. As the gold standard of handling missing data, multiple imputation (MI) methods are proposed to account for the imputation uncertainty and provide proper statistical inference. In this work, we propose Multiple Imputation via Generative Adversarial Network (MI-GAN), a deep learning-based (in specific, a GAN-based) multiple imputation method, that can work under missing at random (MAR) mechanism with theoretical support. MI-GA…
Center for Data Science, Zhejiang University（浙江大学数据科学中心）；Information Hub, The Hong Kong University of Science and Technology（香港科技大学信息枢纽）；College of Computer Science, Zhejiang University（浙江大学计算机科学与技术学院）
Data imputation has been extensively explored to solve the missing data problem. The dramatically increasing volume of incomplete data makes the imputation models computationally infeasible in many real-life applications. In this paper, we propose an effective scalable imputation system named SCIS to significantly speed up the training of the differentiable generative adversarial imputation models under accuracy-guarantees for large-scale incomplete data. SCIS consists of two modules, differentiable imputation modeling (DIM) and sample size estimation (SSE). DIM leverages a new masking Sinkhor…
Synthetic data for ratemaking: imputation-based methods vs adversarial networks and autoencoders
Department of Actuarial Science, Faculty of Business and Economics, University of Lausanne（卢塞恩大学商学院精算科学系）；Institute of Mathematics and Statistics, Faculty of Science and Technology, University of Tartu（塔尔图大学科学与技术学院数学与统计学研究所）
Missing data imputation (MDI) is crucial when dealing with tabular datasets across various domains. Autoencoders can be trained to reconstruct missing values, and graph autoencoders (GAE) can additionally consider similar patterns in the dataset when imputing new values for a given instance. However, previously proposed GAEs suffer from scalability issues, requiring the user to define a similarity metric among patterns to build the graph connectivity beforehand. In this paper, we leverage recent progress in latent graph imputation to propose a novel EdGe Generation Graph AutoEncoder (EGG-GAE) …
University of North Carolina at Chapel Hill（北卡罗来纳大学教堂山分校）
Deep Learning (DL) methods have dramatically increased in popularity in recent years. While its initial success was demonstrated in the classification and manipulation of image data, there has been significant growth in the application of DL methods to problems in the biomedical sciences. However, the greater prevalence and complexity of missing data in biomedical datasets present significant challenges for DL methods. Here, we provide a formal treatment of missing data in the context of Variational Autoencoders (VAEs), a popular unsupervised DL architecture commonly utilized for dimension red…
Modern scientific research and applications very often encounter "fragmentary data" which brings big challenges to imputation and prediction. By leveraging the structure of response patterns, we propose a unified and flexible framework based on Generative Adversarial Nets (GAN) to deal with fragmentary data imputation and label prediction at the same time. Unlike most of the other generative model based imputation methods that either have no theoretical guarantee or only consider Missing Completed At Random (MCAR), the proposed FragmGAN has theoretical guarantees for imputation with data Missi…
Missing data is a recurrent and challenging problem, especially when using machine learning algorithms for real-world applications. For this reason, missing data imputation has become an active research area, in which recent deep learning approaches have achieved state-of-the-art results. We propose DAEMA (Denoising Autoencoder with Mask Attention), an algorithm based on a denoising autoencoder architecture with an attention mechanism. While most imputation algorithms use incomplete inputs as they would use complete data - up to basic preprocessing (e.g. mean imputation) - DAEMA leverages a ma…
Missing data imputation (MDI) is a fundamental problem in many scientific disciplines. Popular methods for MDI use global statistics computed from the entire data set (e.g., the feature-wise medians), or build predictive models operating independently on every instance. In this paper we propose a more general framework for MDI, leveraging recent work in the field of graph neural networks (GNNs). We formulate the MDI task in terms of a graph denoising autoencoder, where each edge of the graph encodes the similarity between two patterns. A GNN encoder learns to build intermediate representations…
Siemens AG（西门子股份公司）；Ludwig-Maximilians University of Munich（慕尼黑路德维希-马克西米利安大学）；University Clinics Erlangen（埃尔朗根大学诊所）
Electronic Health Records often suffer from missing data, which poses a major problem in clinical practice and clinical studies. A novel approach for dealing with missing data are Generative Adversarial Nets (GANs), which have been generating huge research interest in image generation and transformation. Recently, researchers have attempted to apply GANs to missing data generation and imputation for EHR data: a major challenge here is the categorical nature of the data. State-of-the-art solutions to the GAN-based generation of categorical data involve either reinforcement learning, or learning…
The Hong Kong University of Science and Technology (Guangzhou)（香港科技大学（广州））；The Hong Kong University of Science and Technology（香港科技大学）；AI Lab, Tencent（腾讯AI实验室）
Graph neural networks (GNNs) are popular weapons for modeling relational data. Existing GNNs are not specified for attribute-incomplete graphs, making missing attribute imputation a burning issue. Until recently, many works notice that GNNs are coupled with spectral concentration, which means the spectrum obtained by GNNs concentrates on a local part in spectral domain, e.g., low-frequency due to oversmoothing issue. As a consequence, GNNs may be seriously flawed for reconstructing graph attributes as graph spectral concentration tends to cause a low imputation precision. In this work, we pres…
Multivariate time-series data are used in many classification and regression predictive tasks, and recurrent models have been widely used for such tasks. Most common recurrent models assume that time-series data elements are of equal length and the ordered observations are recorded at regular intervals. However, real-world time-series data have neither a similar length nor a same number of observations. They also have missing entries, which hinders the performance of predictive tasks. In this paper, we approach these issues by presenting a model for the combined task of imputing and predicting…
Adversarial training is an approach for increasing model's resilience against adversarial perturbations. Such approaches have been demonstrated to result in models with feature representations that generalize better. However, limited works have been done on adversarial training of models on graph data. In this paper, we raise such a question { does adversarial training improve the generalization of graph representations. We formulate L2 and L1 versions of adversarial training in two powerful node embedding methods: graph autoencoder (GAE) and variational graph autoencoder (VGAE). We conduct ex…
A new form of the variational autoencoder (VAE) is proposed, based on the symmetric Kullback-Leibler divergence. It is demonstrated that learning of the resulting symmetric VAE (sVAE) has close connections to previously developed adversarial-learning methods. This relationship helps unify the previously distinct techniques of VAE and adversarially learning, and provides insights that allow us to ameliorate shortcomings with some previously developed adversarial methods. In addition to an analysis that motivates and explains the sVAE, an extensive set of experiments validate the utility of the …
Datasets with missing values are very common on industry applications, and they can have a negative impact on machine learning models. Recent studies introduced solutions to the problem of imputing missing values based on deep generative models. Previous experiments with Generative Adversarial Networks and Variational Autoencoders showed interesting results in this domain, but it is not clear which method is preferable for different use cases. The goal of this work is twofold: we present a comparison between missing data imputation solutions based on deep generative models, and we propose impr…
DPGAN: A Dual-Path Generative Adversarial Network for Missing Data Imputation in Graphs
Hong Kong Polytechnic University（香港理工大学）；National University of Singapore（新加坡国立大学）；Kyushu University（九州大学）；University of Alberta（阿尔伯塔大学）；University of Tokyo（东京大学）
Any autoencoder network can be turned into a generative model by imposing an arbitrary prior distribution on its hidden code vector. Variational Autoencoder (VAE) [2] uses a KL divergence penalty to impose the prior, whereas Adversarial Autoencoder (AAE) [1] uses {\it generative adversarial networks} GAN [3]. GAN trades the complexities of {\it sampling} algorithms with the complexities of {\it searching} Nash equilibrium in minimax games. Such minimax architectures get trained with the help of data examples and gradients flowing through a generator and an adversary. A straightforward modifica…
Graph neural networks (GNNs) achieve remarkable performance for tasks on graph data. However, recent works show they are extremely vulnerable to adversarial structural perturbations, making their outcomes unreliable. In this paper, we propose DefenseVGAE, a novel framework leveraging variational graph autoencoders(VGAEs) to defend GNNs against such attacks. DefenseVGAE is trained to reconstruct graph structure. The reconstructed adjacency matrix can reduce the effects of adversarial perturbations and boost the performance of GCNs when facing adversarial attacks. Our experiments on a number of …
Universidad Carlos III de Madrid（马德里卡洛斯三世大学）；Microsoft Research（微软研究院）；University of Cambridge（剑桥大学）
Variational Autoencoders (VAEs) have recently been highly successful at imputing and acquiring heterogeneous missing data. However, within this specific application domain, existing VAE methods are restricted by using only one layer of latent variables and strictly Gaussian posterior approximations. To address these limitations, we present HH-VAEM, a Hierarchical VAE model for mixed-type incomplete data that uses Hamiltonian Monte Carlo with automatic hyper-parameter tuning for improved approximate inference. Our experiments show that HH-VAEM outperforms existing baselines in the tasks of miss…
University of Technology Sydney（悉尼科技大学）；University of New South Wales（新南威尔士大学）
Graph embedding is an effective method to represent graph data in a low dimensional space for graph analytics. Most existing embedding algorithms typically focus on preserving the topological structure or minimizing the reconstruction errors of graph data, but they have mostly ignored the data distribution of the latent codes from the graphs, which often results in inferior embedding in real-world graph data. In this paper, we propose a novel adversarial graph embedding framework for graph data. The framework encodes the topological structure and node content in a graph to a compact representa…
University of California, Santa Barbara（加州大学圣巴巴拉分校）；UC, Davis Health（加州大学戴维斯分校医疗中心）
Multiple organ failure (MOF) is a severe syndrome with a high mortality rate among Intensive Care Unit (ICU) patients. Early and precise detection is critical for clinicians to make timely decisions. An essential challenge in applying machine learning models to electronic health records (EHRs) is the pervasiveness of missing values. Most existing imputation methods are involved in the data preprocessing phase, failing to capture the relationship between data and outcome for downstream predictions. In this paper, we propose classifier-guided generative adversarial imputation networks Classifier…
University of Notre Dame（圣母大学）；Lawrence Livermore National Laboratories（劳伦斯利弗莫尔国家实验室）
Imputation of missing data is a task that plays a vital role in a number of engineering and science applications. Often such missing data arise in experimental observations from limitations of sensors or post-processing transformation errors. Other times they arise from numerical and algorithmic constraints in computer simulations. One such instance and the application emphasis of this paper are numerical simulations of storm surge. The simulation data corresponds to time-series surge predictions over a number of save points within the geographic domain of interest, creating a spatio-temporal …
Image inpainting is one of the important tasks in computer vision which focuses on the reconstruction of missing regions in an image. The aim of this paper is to introduce an image inpainting model based on Wasserstein Generative Adversarial Imputation Network. The generator network of the model uses building blocks of convolutional layers with different dilation rates, together with skip connections that help the model reproduce fine details of the output. This combination yields a universal imputation model that is able to handle various scenarios of missingness with sufficient quality. To s…
Autoencoders provide a powerful framework for learning compressed representations by encoding all of the information needed to reconstruct a data point in a latent code. In some cases, autoencoders can "interpolate": By decoding the convex combination of the latent codes for two datapoints, the autoencoder can produce an output which semantically mixes characteristics from the datapoints. In this paper, we propose a regularization procedure which encourages interpolated outputs to appear more realistic by fooling a critic network which has been trained to recover the mixing coefficient from in…
Most deep latent factor models choose simple priors for simplicity, tractability or not knowing what prior to use. Recent studies show that the choice of the prior may have a profound effect on the expressiveness of the model,especially when its generative network has limited capacity. In this paper, we propose to learn a proper prior from data for adversarial autoencoders(AAEs). We introduce the notion of code generators to transform manually selected simple priors into ones that can better characterize the data distribution. Experimental results show that the proposed model can generate bett…
Hefei University of Technology（合肥工业大学）；University of Technology Sydney（悉尼科技大学）；Chinese Academy of Sciences（中国科学院）；University of Louisiana at Lafayette（路易斯安那大学拉斐特分校）
Network embedding represents nodes in a continuous vector space and preserves structure information from the Network. Existing methods usually adopt a "one-size-fits-all" approach when concerning multi-scale structure information, such as first- and second-order proximity of nodes, ignoring the fact that different scales play different roles in the embedding learning. In this paper, we propose an Attention-based Adversarial Autoencoder Network Embedding(AAANE) framework, which promotes the collaboration of different scales and lets them vote for robust representations. The proposed AAANE consi…
University of Maryland College Park（马里兰大学帕克分校）；IBM Research（IBM研究院）
Detecting out of distribution (OOD) samples is of paramount importance in all Machine Learning applications. Deep generative modeling has emerged as a dominant paradigm to model complex data distributions without labels. However, prior work has shown that generative models tend to assign higher likelihoods to OOD samples compared to the data distribution on which they were trained. First, we propose Adversarial Mirrored Autoencoder (AMA), a variant of Adversarial Autoencoder, which uses a mirrored Wasserstein loss in the discriminator to enforce better semantic-level reconstruction. We also pr…
Learning-enabled components (LECs) are widely used in cyber-physical systems (CPS) since they can handle the uncertainty and variability of the environment and increase the level of autonomy. However, it has been shown that LECs such as deep neural networks (DNN) are not robust and adversarial examples can cause the model to make a false prediction. The paper considers the problem of efficiently detecting adversarial examples in LECs used for regression in CPS. The proposed approach is based on inductive conformal prediction and uses a regression model based on variational autoencoder. The arc…
Opening the Black Box: Towards inherently interpretable energy data imputation models using building physics insight
E3D - Institute of Energy Efficiency and Sustainable Building, RWTH Aachen University（亚琛工业大学E3D能源效率与可持续建筑研究所）；Future Cities Laboratory Global, Singapore-ETH Centre（新加坡-ETH中心未来城市实验室全球分部）；Department of the Built Environment, College of Design and Engineering, National University of Singapore (NUS)（新加坡国立大学设计与工程学院建筑环境系）
Generative Adversarial Networks (GANs) have been used in many different applications to generate realistic synthetic data. We introduce a novel GAN with Autoencoder (GAN-AE) architecture to generate synthetic samples for variable length, multi-feature sequence datasets. In this model, we develop a GAN architecture with an additional autoencoder component, where recurrent neural networks (RNNs) are used for each component of the model in order to generate synthetic data to improve classification accuracy for a highly imbalanced medical device dataset. In addition to the medical device dataset, …
