Factor analysis is a flexible technique for assessment of multivariate dependence and codependence. Besides being an exploratory tool used to reduce the dimensionality of multivariate data, it allows estimation of common factors that often have an interesting theoretical interpretation in real problems. However, in some specific cases the interest involves the effects of latent factors not only in the mean, but in the entire response distribution, represented by a quantile. This paper introduces a new class of models, named quantile factor models, which combines factor model theory with distribution-free quantile regression producing a robust statistical method. Bayesian estimation for the proposed model is performed using an efficient Markov chain Monte Carlo algorithm. The proposed model is evaluated using synthetic datasets in different settings, in order to evaluate its robustness and performance under different quantiles compared to more usual methods. The model is also applied to a financial sector dataset and a heart disease experiment.
A two-stage approach is proposed to overcome the problem in quantile regression, where separately fitted curves for several quantiles may cross. The standard Bayesian quantile regression model is applied in the first stage, followed by a Gaussian process regression adjustment, which monotonizes the quantile function whilst borrowing strength from nearby quantiles. The two stage approach is computationally efficient, and more general than existing techniques. The method is shown to be competitive with alternative approaches via its performance in simulated examples.
Here we develop a method for performing nonparametric Bayesian inference on quantiles. Relying on geometric measure theory and employing a Hausdorff base measure, we are able to specify meaningful priors for the quantile while treating the distribution of the data otherwise nonparametrically. We further extend the method to a hierarchical model for quantiles of subpopulations, linking subgroups together solely through their quantiles. Our approach is computationally straightforward, allowing for censored and noisy data. We demonstrate the proposed methodology on simulated data and an applied p…
Flexible estimation of multiple conditional quantiles is of interest in numerous applications, such as studying the effect of pregnancy-related factors on low and high birth weight. We propose a Bayesian non-parametric method to simultaneously estimate non-crossing, non-linear quantile curves. We expand the conditional distribution function of the response in I-spline basis functions where the covariate-dependent coefficients are modeled using neural networks. By leveraging the approximation power of splines and neural networks, our model can approximate any continuous quantile function. Compa…
Bayesian simultaneous estimation of nonparametric quantile curves is a challenging problem, requiring a flexible and robust data model whilst satisfying the monotonicity or noncrossing constraints on the quantiles. This paper presents the use of the pyramid quantile regression method in the spline regression setting. In high dimensional problems, the choice of the pyramid locations becomes crucial for a robust parameter estimation. In this work we derive the optimal {pyramid locations which then allows us to propose an efficient} adaptive block-update MCMC scheme for posterior computation. Sim…
Quantile regression models are a powerful tool for studying different points of the conditional distribution of univariate response variables. Their multivariate counterpart extension though is not straightforward, starting with the definition of multivariate quantiles. We propose here a flexible Bayesian quantile regression model when the response variable is multivariate, where we are able to define a structured additive framework for all predictor variables. We build on previous ideas considering a directional approach to define the quantiles of a response variable with multiple-outputs and…
A new class of models, named dynamic quantile linear models, is presented. It combines dynamic linear models with distribution free quantile regression producing a robust statistical method. Bayesian inference for dynamic quantile linear models can be performed using an efficient Markov chain Monte Carlo algorithm. A fast sequential procedure suited for high-dimensional predictive modeling applications with massive data, in which the generating process is itself changing overtime, is also proposed. The proposed model is evaluated using synthetic and well-known time series data. The model is al…
In this work we discuss the progress of Bayesian quantile regression models since their first proposal and we discuss the importance of all parameters involved in the inference process. Using a representation of the asymmetric Laplace distribution as a mixture of a normal and an exponential distribution, we discuss the relevance of the presence of a scale parameter to control for the variance in the model. Besides that we consider the posterior distribution of the latent variable present in the mixture representation to showcase outlying observations given the Bayesian quantile regression fits…
We propose a new family of error distributions for model-based quantile regression, which is constructed through a structured mixture of normal distributions. The construction enables fixing specific percentiles of the distribution while, at the same time, allowing for varying mode, skewness and tail behavior. It thus overcomes the severe limitation of the asymmetric Laplace distribution -- the most commonly used error model for parametric quantile regression -- for which the skewness of the error density is fully specified when a particular percentile is fixed. We develop a Bayesian formulati…
Despite the increasing popularity of quantile regression models for continuous responses, models for count data have so far received little attention. The main quantile regression technique for count data involves adding uniform random noise or "jittering", thus overcoming the problem that the conditional quantile function is not a continuous function of the parameters of interest. Although jittering allows estimating the conditional quantiles, it has the drawback that, for small values of the response variable $Y,$ the added noise can have a large influence on the estimated quantiles. In addi…
We consider a Bayesian method for simultaneous quantile regression on a real variable. By monotone transformation, we can make both the response variable and the predictor variable take values in the unit interval. A representation of quantile function is given by a convex combination of two monotone increasing functions $ξ_1$ and $ξ_2$ not depending on the prediction variables. In a Bayesian approach, a prior is put on quantile functions by putting prior distributions on $ξ_1$ and $ξ_2$. The monotonicity constraint on the curves $ξ_1$ and $ξ_2$ are obtained through a spline basis expansion wi…
In this work we show a Bayesian quantile regression method to response variables with mixed discrete-continuous distribution with a point mass at zero, where these observations are believed to be left censored or true zeros. We combine the information provided by the quantile regression analysis to present a more complete description of the probability of being censored given that the observed value is equal to zero, while also studying the conditional quantiles of the continuous part. We build up an Markov Chain Monte Carlo method from related models in the literature to obtain samples from t…
This study extends the Bayesian nonparametric instrumental variable regression model to determine the structural effects of covariates on the conditional quantile of the response variable. The error distribution is nonparametrically modelled using a Dirichlet mixture of bivariate normal distributions. The mean functions include the smooth effects of the covariates represented using the spline functions in an additive manner. The conditional variance of the second-stage error is also modelled using the spline functions such that it varies smoothly with the covariates. Accordingly, the proposed …
Graphical models are ubiquitous tools to describe the interdependence between variables measured simultaneously such as large-scale gene or protein expression data. Gaussian graphical models (GGMs) are well-established tools for probabilistic exploration of dependence structures using precision matrices and they are generated under a multivariate normal joint distribution. However, they suffer from several shortcomings since they are based on Gaussian distribution assumptions. In this article, we propose a Bayesian quantile based approach for sparse estimation of graphs. We demonstrate that th…
In this article, we consider a non-parametric Bayesian approach to multivariate quantile regression. The collection of related conditional distributions of a response vector Y given a univariate covariate X is modeled using a Dependent Dirichlet Process (DDP) prior. The DDP is used to introduce dependence across x. As the realizations from a Dirichlet process prior are almost surely discrete, we need to convolve it with a kernel. To model the error distribution as flexibly as possible, we use a countable mixture of multidimensional normal distributions as our kernel. For posterior computations…
Due to increased awareness of data protection and corresponding laws many data, especially involving sensitive personal information, are not publicly accessible. Accordingly, many data collecting agencies only release aggregated data, e.g. providing the mean and selected quantiles of population distributions. Yet, research and scientific understanding, e.g. for medical diagnostics or policy advice, often relies on data access. To overcome this tension, we propose a Bayesian method for learning from quantile information. Being based on order statistics of finite samples our method adequately an…
In this article, we develop a semiparametric Bayesian estimation and model selection approach for partially linear additive models in conditional quantile regression. The asymmetric Laplace distribution provides a mechanism for Bayesian inferences of quantile regression models based on the check loss. The advantage of this new method is that nonlinear, linear and zero function components can be separated automatically and simultaneously during model fitting without the need of pre-specification or parameter tuning. This is achieved by spike-and-slab priors using two sets of indicator variables…
Timely characterizations of risks in economic and financial systems play an essential role in both economic policy and private sector decisions. However, the informational content of low-frequency variables and the results from conditional mean models provide only limited evidence to investigate this problem. We propose a novel mixed-frequency quantile vector autoregression (MF-QVAR) model to address this issue. Inspired by the univariate Bayesian quantile regression literature, the multivariate asymmetric Laplace distribution is exploited under the Bayesian framework to form the likelihood. A…
Using an asymmetric Laplace distribution, which provides a mechanism for Bayesian inference of quantile regression models, we develop a fully Bayesian approach to fitting single-index models in conditional quantile regression. In this work, we use a Gaussian process prior for the unknown nonparametric link function and a Laplace distribution on the index vector, with the latter motivated by the recent popularity of the Bayesian lasso idea. We design a Markov chain Monte Carlo algorithm for posterior inference. Careful consideration of the singularity of the kernel matrix, and tractability of s…
In statistical practice, a realistic Bayesian model for a given data set can be defined by a likelihood function that is analytically or computationally intractable, due to large data sample size, high parameter dimensionality, or complex likelihood functional form. This in turn poses challenges to the computation and inference of the posterior distribution of the model parameters. For such a model, a tractable likelihood function is introduced which approximates the exact likelihood through its quantile function. It is defined by an asymptotic chi-square confidence distribution for a pivotal …
Generalized additive models (GAMs) are flexible non-linear regression models, which can be fitted efficiently using the approximate Bayesian methods provided by the mgcv R package. While the GAM methods provided by mgcv are based on the assumption that the response distribution is modelled parametrically, here we discuss more flexible methods that do not entail any parametric assumption. In particular, this article introduces the qgam package, which is an extension of mgcv providing fast calibrated Bayesian methods for fitting quantile GAMs (QGAMs) in R. QGAMs are based on a smooth version of …
This article proposes a Bayesian approach to estimating the spectral density of a stationary time series using a prior based on a mixture of P-spline distributions. Our proposal is motivated by the B-spline Dirichlet process prior of Edwards et al. (2019) in combination with Whittle's likelihood and aims at reducing the high computational complexity of its posterior computations. The strength of the B-spline Dirichlet process prior over the Bernstein-Dirichlet process prior of Choudhuri et al. (2004) lies in its ability to estimate spectral densities with sharp peaks and abrupt changes due to …
The asymmetric Laplace density (ALD) is used as a working likelihood for Bayesian quantile regression. Sriram et al.(2013) derived posterior consistency for Bayesian linear quantile regression based on the misspecified ALD. While their paper also argued for $\sqrt{n}-$consistency, Sriram and Ramamoorthi (2017) highlighted that the argument was only valid for a rate less than $\sqrt{n}$. So, the question of $\sqrt{n}-$rate has remained unaddressed, but is necessary to carry out meaningful Bayesian inference based on the ALD. In this paper, we derive results to obtain posterior consistency rates…
Ensemble of regression trees have become popular statistical tools for the estimation of conditional mean given a set of predictors. However, quantile regression trees and their ensembles have not yet garnered much attention despite the increasing popularity of the linear quantile regression model. This work proposes a Bayesian quantile additive regression trees model that shows very good predictive performance illustrated using simulation studies and real data applications. Further extension to tackle binary classification problems is also considered.
We develop quantile regression models in order to derive risk margin and to evaluate capital in non-life insurance applications. By utilizing the entire range of conditional quantile functions, especially higher quantile levels, we detail how quantile regression is capable of providing an accurate estimation of risk margin and an overview of implied capital based on the historical volatility of a general insurers loss portfolio. Two modelling frameworks are considered based around parametric and nonparametric quantile regression models which we develop specifically in this insurance setting. I…
Estimation of extreme quantile regions, spaces in which future extreme events can occur with a given low probability, even beyond the range of the observed data, is an important task in the analysis of extremes. Existing methods to estimate such regions are available, but do not provide any measures of estimation uncertainty. We develop univariate and bivariate schemes for estimating extreme quantile regions under the Bayesian paradigm that outperforms existing approaches and provides natural measures of quantile region estimate uncertainty. We examine the method's performance in controlled si…
This article develops a Bayesian approach for estimating panel quantile regression with binary outcomes in the presence of correlated random effects. We construct a working likelihood using an asymmetric Laplace (AL) error distribution and combine it with suitable prior distributions to obtain the complete joint posterior distribution. For posterior inference, we propose two Markov chain Monte Carlo (MCMC) algorithms but prefer the algorithm that exploits the blocking procedure to produce lower autocorrelation in the MCMC draws. We also explain how to use the MCMC draws to calculate the margin…
This work has been motivated by the challenge of the 2017 conference on Extreme-Value Analysis (EVA2017), with the goal of predicting daily precipitation quantiles at the $99.8\%$ level for each month at observed and unobserved locations. We here develop a Bayesian generalized additive modeling framework tailored to estimate complex trends in marginal extremes observed over space and time. Our approach is based on a set of regression equations linked to the exceedance probability above a high threshold and to the size of the excess, the latter being modeled using the generalized Pareto (GP) di…
Bayesian inference provides a flexible way of combining data with prior information. However, quantile regression is not equipped with a parametric likelihood, and therefore, Bayesian inference for quantile regression demands careful investigation. This paper considers the Bayesian empirical likelihood approach to quantile regression. Taking the empirical likelihood into a Bayesian framework, we show that the resultant posterior from any fixed prior is asymptotically normal; its mean shrinks toward the true parameter values, and its variance approaches that of the maximum empirical likelihood …
Quantile regression is a powerful data analysis tool that accommodates heterogeneous covariate-response relationships. We find that by coupling the asymmetric Laplace working likelihood with appropriate shrinkage priors, we can deliver posterior inference that automatically adapts to possible sparsity in quantile regression analysis. After a suitable adjustment on the posterior variance, the posterior inference provides asymptotically valid inference under heterogeneity. Furthermore, the proposed approach leads to oracle asymptotic efficiency for the active (nonzero) quantile regression coeffi…
This paper extends the idea of decoupling shrinkage and sparsity for continuous priors to Bayesian Quantile Regression (BQR). The procedure follows two steps: In the first step, we shrink the quantile regression posterior through state of the art continuous priors and in the second step, we sparsify the posterior through an efficient variant of the adaptive lasso, the signal adaptive variable selection (SAVS) algorithm. We propose a new variant of the SAVS which automates the choice of penalisation through quantile specific loss-functions that are valid in high dimensions. We show in large sca…
Bayesian optimisation (BO) is widely used to optimise stochastic black box functions. While most BO approaches focus on optimising conditional expectations, many applications require risk-averse strategies and alternative criteria accounting for the distribution tails need to be considered. In this paper, we propose new variational models for Bayesian quantile and expectile regression that are well-suited for heteroscedastic noise settings. Our models consist of two latent Gaussian processes accounting respectively for the conditional quantile (or expectile) and the scale parameter of an asymm…
Pólya trees fix partitions and use random probabilities in order to construct random probability measures. With quantile pyramids we instead fix probabilities and use random partitions. For nonparametric Bayesian inference we use a prior which supports piecewise linear quantile functions, based on the need to work with a finite set of partitions, yet we show that the limiting version of the prior exists. We also discuss and investigate an alternative model based on the so-called substitute likelihood. Both approaches factorize in a convenient way leading to relatively straightforward analysis …
In this paper, we consider Bayesian inference on a class of multivariate median and the multivariate quantile functionals of a joint distribution using a Dirichlet process prior. Since, unlike univariate quantiles, the exact posterior distribution of multivariate median and multivariate quantiles are not obtainable explicitly, we study these distributions asymptotically. We derive a Bernstein-von Mises theorem for the multivariate $\ell_1$-median with respect to general $\ell_p$-norm, which in particular shows that its posterior concentrates around its true value at $n^{-1/2}$-rate and its cre…
Motivated by the goal of improving the efficiency of small sample design, we propose a novel Bayesian stochastic approximation method to estimate the root of a regression function. The method features adaptive local modelling and nonrecursive iteration. Strong consistency of the Bayes estimator is obtained. Simulation studies show that our method is superior in finite-sample performance to Robbins--Monro type procedures. Extensions to searching for extrema and a version of generalized multivariate quantile are presented.
