We consider the following string matching problem on a node-labeled graph $G=(V,E)$: given a pattern string $P$, decide whether there exists a path in $G$ whose concatenation of node labels equals $P$. This is a basic primitive in various problems in bioinformatics, graph databases, or networks. The hardness results of Backurs and Indyk (FOCS 2016) imply that this problem cannot be solved in better than $O(|E||P|)$ time, under the Orthogonal Vectors Hypothesis (OVH), and this holds even under various restrictions on the graph (Equi et al., ICALP 2019).
In this paper we consider its offline version, namely the one in which we are allowed to index the graph in order to support time-efficient string matching queries. Indeed, it was tantalizing in the string matching community to believe that sub-quadratic time queries can be achieved, e.g. at the cost of a high-degree polynomial-time indexing.
We disprove this belief, showing that, under OVH, no polynomial-time index can support querying $P$ in time $O(|E|^δ|P|^β)$, with either $δ< 1$ or $β< 1$. We prove this tight bound employing a known self-reducibility technique, e.g. from the field of dynamic algorithms, which translates conditional lower bounds for an online problem to its offline version.
As a side-contribution, we formalize this technique with the notion of linear independent-components reduction, allowing for a simple proof of our result. As another illustration of our technique, we also translate the quadratic conditional lower bound of Backurs and Indyk (STOC 2015) for the problem of matching a query string inside a text, under edit distance. We obtain an analogous tight quadratic lower bound for its offline version, improving the recent result of Cohen-Addad, Feuilloley and Starikovskaya (SODA 2019), but with a slightly different boundary condition.
The edit distance (a.k.a. the Levenshtein distance) between two strings is defined as the minimum number of insertions, deletions or substitutions of symbols needed to transform one string into another. The problem of computing the edit distance between two strings is a classical computational task, with a well-known algorithm based on dynamic programming. Unfortunately, all known algorithms for this problem run in nearly quadratic time. In this paper we provide evidence that the near-quadratic running time bounds known for the problem of computing edit distance might be tight. Specifically, w…
The Longest Common Weakly Increasing Subsequence problem (LCWIS) is a variant of the classic Longest Common Subsequence problem (LCS). Both problems can be solved with simple quadratic time algorithms. A recent line of research led to a number of matching conditional lower bounds for LCS and other related problems. However, the status of LCWIS remained open. In this paper we show that LCWIS cannot be solved in strongly subquadratic time unless the Strong Exponential Time Hypothesis (SETH) is false. The ideas which we developed can also be used to obtain a lower bound based on a safer assumptio…
Subset-Sum and k-SAT are two of the most extensively studied problems in computer science, and conjectures about their hardness are among the cornerstones of fine-grained complexity. One of the most intriguing open problems in this area is to base the hardness of one of these problems on the other. Our main result is a tight reduction from k-SAT to Subset-Sum on dense instances, proving that Bellman's 1962 pseudo-polynomial $O^{*}(T)$-time algorithm for Subset-Sum on $n$ numbers and target $T$ cannot be improved to time $T^{1-\varepsilon}\cdot 2^{o(n)}$ for any $\varepsilon>0$, unless the Stro…
The field of exact exponential time algorithms for NP-hard problems has thrived over the last decade. While exhaustive search remains asymptotically the fastest known algorithm for some basic problems, difficult and non-trivial exponential time algorithms have been found for a myriad of problems, including Graph Coloring, Hamiltonian Path, Dominating Set and 3-CNF-Sat. In some instances, improving these algorithms further seems to be out of reach. The CNF-Sat problem is the canonical example of a problem for which the trivial exhaustive search algorithm runs in time O(2^n), where n is the numb…
$ \newcommand{\problem}[1]{\ensuremath{\mathrm{#1}} } \newcommand{\SVP}{\problem{SVP}} \newcommand{\ensuremath}[1]{#1} $We prove the following quantitative hardness results for the Shortest Vector Problem in the $\ell_p$ norm ($\SVP_p$), where $n$ is the rank of the input lattice. $\bullet$ For "almost all" $p > p_0 \approx 2.1397$, there no $2^{n/C_p}$-time algorithm for $\SVP_p$ for some explicit constant $C_p > 0$ unless the (randomized) Strong Exponential Time Hypothesis (SETH) is false. $\bullet$ For any $p > 2$, there is no $2^{o(n)}$-time algorithm for $\SVP_p$ unless the (randomized) G…
The $q$-Coloring problem asks whether the vertices of a graph can be properly colored with $q$ colors. Lokshtanov et al. [SODA 2011] showed that $q$-Coloring on graphs with a feedback vertex set of size $k$ cannot be solved in time $\mathcal{O}^*((q-\varepsilon)^k)$, for any $\varepsilon > 0$, unless the Strong Exponential-Time Hypothesis (SETH) fails. In this paper we perform a fine-grained analysis of the complexity of $q$-Coloring with respect to a hierarchy of parameters. We show that even when parameterized by the vertex cover number, $q$ must appear in the base of the exponent: Unless ET…
$ \newcommand{\eps}{\varepsilon} \newcommand{\problem}[1]{\ensuremath{\mathrm{#1}} } \newcommand{\CVP}{\problem{CVP}} \newcommand{\SVP}{\problem{SVP}} \newcommand{\CVPP}{\problem{CVPP}} \newcommand{\ensuremath}[1]{#1} $For odd integers $p \geq 1$ (and $p = \infty$), we show that the Closest Vector Problem in the $\ell_p$ norm ($\CVP_p$) over rank $n$ lattices cannot be solved in $2^{(1-\eps) n}$ time for any constant $\eps > 0$ unless the Strong Exponential Time Hypothesis (SETH) fails. We then extend this result to "almost all" values of $p \geq 1$, not including the even integers. This comes…
We introduce techniques for proving superlinear conditional lower bounds for polynomial time problems. In particular, we show that CircuitSAT for circuits with m gates and log(m) inputs (denoted by log-CircuitSAT) is not decidable in essentially-linear time unless the exponential time hypothesis (ETH) is false and k-Clique is decidable in essentially-linear time in terms of the graph's size for all fixed k. Such conditional lower bounds have previously only been demonstrated relative to the strong exponential time hypothesis (SETH). Our results therefore offer significant progress towards prov…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs in computational biology, of query operations in graph databases, and of analysis operations in heterogeneous networks, where the nodes of some paths must match a sequence of labels or types. We describe a simple conditional lower bound that, for any constant $ε>0$, an $O(|E|^{1 - ε} \, m)$-time or an $O(|E| \, m^{1 - ε})$-time algorithm for exact pattern m…
We show conditional hardness of Approximate Nearest Neighbor Search (ANN) under the $\ell_\infty$ norm with two simple reductions. Our first reduction shows that hardness of a special case of the Shortest Vector Problem (SVP), which captures many provably hard instances of SVP, implies a lower bound for ANN with polynomial preprocessing time under the same norm. Combined with a recent quantitative hardness result on SVP under $\ell_\infty$ (Bennett et al., FOCS 2017), our reduction implies that finding a $(1+\varepsilon)$-approximate nearest neighbor under $\ell_\infty$ with polynomial preproc…
This paper will analyze several quadratic-time solvable problems, and will classify them into two classes: problems that are solvable in truly subquadratic time (that is, in time $O(n^{2-ε})$ for some $ε>0$) and problems that are not, unless the well known Strong Exponential Time Hypothesis (SETH) is false. In particular, we will prove that some quadratic-time solvable problems are indeed easier than expected. We will provide an algorithm that computes the transitive closure of a directed graph in time $O(mn^{\frac{ω+1}{4}})$, where $m$ denotes the number of edges in the transitive closure and…
Hyperbolicity measures, in terms of (distance) metrics, how close a given graph is to being a tree. Due to its relevance in modeling real-world networks, hyperbolicity has seen intensive research over the last years. Unfortunately, the best known algorithms for computing the hyperbolicity number of a graph (the smaller, the more tree-like) have running time $O(n^4)$, where $n$ is the number of graph vertices. Exploiting the framework of parameterized complexity analysis, we explore possibilities for "linear-time FPT" algorithms to compute hyperbolicity. For instance, we show that hyperbolicity…
For graphs $G,H$, a homomorphism from $G$ to $H$ is an edge-preserving mapping from $V(G)$ to $V(H)$. In the list homomorphism problem, denoted by \textsc{LHom}($H$), we are given a graph $G$ and lists $L: V(G) \to 2^{V(H)}$, and we ask for a homomorphism from $G$ to $H$ which additionally respects the lists $L$. Very recently Okrasa, Piecyk, and Rzążewski [ESA 2020] defined an invariant $i^*(H)$ and proved that under the SETH $\mathcal{O}^*\left (i^*(H)^{\textrm{tw}(G)}\right)$ is the tight complexity bound for \textsc{LHom}($H$), parameterized by the treewidth $\textrm{tw}(G)$ of the instanc…
For even $k$, the matchings connectivity matrix $\mathbf{M}_k$ encodes which pairs of perfect matchings on $k$ vertices form a single cycle. Cygan et al. (STOC 2013) showed that the rank of $\mathbf{M}_k$ over $\mathbb{Z}_2$ is $Θ(\sqrt 2^k)$ and used this to give an $O^*((2+\sqrt{2})^{\mathsf{pw}})$ time algorithm for counting Hamiltonian cycles modulo $2$ on graphs of pathwidth $\mathsf{pw}$. The same authors complemented their algorithm by an essentially tight lower bound under the Strong Exponential Time Hypothesis (SETH). This bound crucially relied on a large permutation submatrix within…
Transformer architectures have led to remarkable progress in many state-of-art applications. However, despite their successes, modern transformers rely on the self-attention mechanism, whose time- and space-complexity is quadratic in the length of the input. Several approaches have been proposed to speed up self-attention mechanisms to achieve sub-quadratic running time; however, the large majority of these works are not accompanied by rigorous error guarantees. In this work, we establish lower bounds on the computational complexity of self-attention in a number of scenarios. We prove that the…
Finding important nodes in a graph and measuring their importance is a fundamental problem in the analysis of social networks, transportation networks, biological systems, etc. Among popular such metrics are graph centrality, betweenness centrality (BC), and reach centrality (RC). These measures are also very related to classic notions like diameter and radius. Roditty and Vassilevska Williams~[STOC'13] showed that no algorithm can compute a (3/2-δ)-approximation of the diameter in sparse and unweighted graphs faster that n^{2-o(1)} time unless the widely believed strong exponential time hypot…
On sparse graphs, Roditty and Williams [2013] proved that no $O(n^{2-\varepsilon})$-time algorithm achieves an approximation factor smaller than $\frac{3}{2}$ for the diameter problem unless SETH fails. In this article, we solve an open question formulated in the literature: can we use the structural properties of median graphs to break this global quadratic barrier? We propose the first combinatiorial algorithm computing exactly all eccentricities of a median graph in truly subquadratic time. Median graphs constitute the family of graphs which is the most studied in metric graph theory becaus…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the given pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs in computational biology, query operations in graph databases, and analysis of heterogeneous networks, where the nodes of some paths must match a sequence of labels or types. In our recent work we described a conditional lower bound stating that the exact pattern matching problem in labeled graphs cannot be solved in less than quadratic time, namely, …
Given a large data matrix $A\in\mathbb{R}^{n\times n}$, we consider the problem of determining whether its entries are i.i.d. with some known marginal distribution $A_{ij}\sim P_0$, or instead $A$ contains a principal submatrix $A_{{\sf Q},{\sf Q}}$ whose entries have marginal distribution $A_{ij}\sim P_1\neq P_0$. As a special case, the hidden (or planted) clique problem requires to find a planted clique in an otherwise uniformly random graph. Assuming unbounded computational resources, this hypothesis testing problem is statistically solvable provided $|{\sf Q}|\ge C \log n$ for a suitable c…
Given a graph G, a q-open neighborhood conflict-free coloring or q-ONCF-coloring is a vertex coloring $c:V(G) \rightarrow \{1,2,\ldots,q\}$ such that for each vertex $v \in V(G)$ there is a vertex in $N(v)$ that is uniquely colored from the rest of the vertices in $N(v)$. When we replace $N(v)$ by the closed neighborhood $N[v]$, then we call such a coloring a q-closed neighborhood conflict-free coloring or simply q-CNCF-coloring. In this paper, we study the NP-hard decision questions of whether for a constant q an input graph has a q-ONCF-coloring or a q-CNCF-coloring. We will study these two …
In recent years several compressed indexes based on variants of the Burrows-Wheeler transformation have been introduced. Some of these index structures far more complex than a single string, as was originally done with the FM-index [Ferragina and Manzini, J. ACM 2005]. As such, there has been an effort to better understand under which conditions such an indexing scheme is possible. This led to the introduction of Wheeler graphs [Gagie it et al., Theor. Comput. Sci., 2017]. A Wheeler graph is a directed graph with edge labels which satisfies two simple axioms. Wheeler graphs can be indexed in a…
The goal of this work is to give precise bounds on the counting complexity of a family of generalized coloring problems (list homomorphisms) on bounded-treewidth graphs. Given graphs $G$, $H$, and lists $L(v)\subseteq V(H)$ for every $v\in V(G)$, a {\em list homomorphism} is a function $f:V(G)\to V(H)$ that preserves the edges (i.e., $uv\in E(G)$ implies $f(u)f(v)\in E(H)$) and respects the lists (i.e., $f(v)\in L(v))$. Standard techniques show that if $G$ is given with a tree decomposition of width $t$, then the number of list homomorphisms can be counted in time $|V(H)|^t\cdot n^{\mathcal{O}…
A homomorphism from a graph $G$ to a graph $H$ is an edge-preserving mapping from $V(G)$ to $V(H)$. Let $H$ be a fixed graph with possible loops. In the list homomorphism problem, denoted by LHom($H$), we are given a graph $G$, whose every vertex $v$ is assigned with a list $L(v)$ of vertices of $H$. We ask whether there exists a homomorphism $h$ from $G$ to $H$, which respects lists $L$, i.e., for every $v \in V(G)$ it holds that $h(v) \in L(v)$. The complexity dichotomy for LHom($H$) was proven by Feder, Hell, and Huang [JGT 2003]. We are interested in the complexity of the problem, paramete…
