Objective
The electrical characteristics of the EEG signals can be used for seizure detection. Statistical independence between different brain regions is measured by functional brain connectivity (FBC). Specific directional effects can't consider by FBC and thus effective brain connectivity (EBC) is used to measure causal intervention between one neuronal region and the rest of the neuronal regions. Our main purpose is to provide a reliable automatic seizure detection approach.
Methods
In this study, three new methods are provided. Deep modular neural network (DMNN) is developed based on a combination of various EBC classification results in the different frequencies. Another method is named "modular effective neural networks (MENN)". This method combines the classification results of the three different EBC in the specific frequency. "Modular frequency neural networks (MFNN)" is another method that combines the classification results of the specific EBC in the seven different frequencies.
Results
The mean accuracy of the MFNN are 97.14%, 98.53%, and 97.91% using directed transfer function, directed coherence, and generalized partial directed coherence, respectively. Using the MENN, the highest mean accuracy is 98.34%. Finally, DMNN has the highest mean accuracy which is equal to 99.43. To our best knowledge, the proposed method is a new method that provides the high accuracy in comparison to other studies which used MIT-CHB database.
Conclusion and significance
The knowledge of structure-function relationships between different areas of the brain is necessary for characterizing the underlying dynamics. Hence, features based on EBC can provide a reliable automatic seizure detection approach.
Over one third of the estimated 3 million people with epilepsy in the US are medication resistant. Responsive neurostimulation from chronically implanted electrodes provides a promising treatment option and alternative to resective surgery. However, determining personalized optimal stimulation parameters, including when and where to intervene to guarantee a positive patient outcome, is a major open challenge. Network neuroscience and control theory offer useful tools that may guide improvements in parameter selection for control of anomalous neural activity. Here we use a novel method to chara…
In this paper, we developed a model-based and a data-driven estimator for directed information (DI) to infer the causal connectivity graph between electrocorticographic (ECoG) signals recorded from brain and to identify the seizure onset zone (SOZ) in epileptic patients. Directed information, an information theoretic quantity, is a general metric to infer causal connectivity between time-series and is not restricted to a particular class of models unlike the popular metrics based on Granger causality or transfer entropy. The proposed estimators are shown to be almost surely convergent. Causal …
Epilepsy is a chronic neurological disorder affecting more than 50 million people globally. An epileptic seizure acts like a temporary shock to the neuronal system, disrupting normal electrical activity in the brain. Epilepsy is frequently diagnosed with electroencephalograms (EEGs). Current methods study the time-varying spectra and coherence but do not directly model changes in extreme behavior. Thus, we propose a new approach to characterize brain connectivity based on the joint tail behavior of the EEGs. Our proposed method, the conditional extremal dependence for brain connectivity (Conex…
Information transmission in the human brain is a fundamentally dynamic network process. In partial epilepsy, this process is perturbed and highly synchronous seizures originate in a local network, the so-called epileptogenic zone (EZ), before recruiting other close or distant brain regions. We studied patient-specific brain network models of 15 drug-resistant epilepsy patients with implanted stereotactic electroencephalography (SEEG) electrodes. Each personalized brain model was derived from structural data of magnetic resonance imaging (MRI) and diffusion tensor weighted imaging (DTI), compri…
Low-dimensional representation of brain networks for seizure risk forecasting
Industrial University of Santander（桑坦德工业大学）；Paris Brain Institute (ICM), Inria Paris, INSERM-U1127, CNRS-UMR7225, Sorbonne University, Pitié-Salpêtrière Hospital（巴黎脑研究所（ICM），法国国家信息与自动化研究所巴黎分部，INSERM-U1127，CNRS-UMR7225，索邦大学，萨尔佩特里埃医院）；Department of Neurology, Epilepsy Unit, Pitié-Salpêtrière University Hospital（神经病学系，癫痫科，萨尔佩特里埃大学医院）；Paris Brain Institute, Sorbonne Université – CNRS UMR 7225 – Inserm U1127（巴黎脑研究所，索邦大学–CNRS UMR 7225–Inserm U1127）；CNRS, Pitié-Salpêtrière Hospital（法国国家科学研究中心，萨尔佩特里埃医院）
Neurostimulation is a promising therapy for abating epileptic seizures. However, it is extremely difficult to identify optimal stimulation patterns experimentally. In this study human recordings are used to develop a functional 24 neuron network statistical model of hippocampal connectivity and dynamics. Spontaneous seizure-like activity is induced in-silico in this reconstructed neuronal network. The network is then used as a testbed to design and validate a wide range of neurostimulation patterns. Commonly used periodic trains were not able to permanently abate seizures at any frequency. A s…
By computerized analysis of cortical activity recorded via fMRI for pediatric epilepsy patients, we implement algorithmic localization of epileptic seizure focus within one of eight cortical lobes. Our innovative machine learning techniques involve intensive analysis of large matrices of mutual information coefficients between pairs of anatomically identified cortical regions. Drastic selection of pairs of regions with significant inter-connectivity provide efficient inputs for our Multi-Layer Perceptron (MLP) classifier. By imposing rigorous parameter parsimony to avoid over fitting we constr…
Open diffusion MRI and connectivity data for epilepsy and surgery: The IDEAS II release
Newcastle University（纽卡斯尔大学）；UCL Queen Square Institute of Neurology（伦敦大学学院女王广场神经科学研究所）；UCL（伦敦大学学院）；The University of Western Australia（西澳大学）；Queen’s University（女王大学）
Neural network oscillations are a fundamental mechanism for cognition, perception and consciousness. Consequently, perturbations of network activity play an important role in the pathophysiology of brain disorders. When structural information from non-invasive brain imaging is merged with mathematical modeling, then generative brain network models constitute in-silico platforms for the exploration of causal mechanisms of brain function and clinical hypothesis testing. We here demonstrate along the example of drug-resistant epilepsy that patient-specific virtual brain models derived from diffus…
We consider the theoretical constraints on interactions between coupled cortical columns. Each column comprises a set of neural populations, where each population is modelled as a neural mass. The existence of semi-stable states within a cortical column has been shown to be dependent on the type of interaction between the constituent neuronal subpopulations, i.e., the form of the implicit synaptic convolution kernels. Current-to-current coupling has been shown, in contrast to potential-to-current coupling, to create semi-stable states within a cortical column. In this analytic and numerical st…
Seizure activity is a ubiquitous and pernicious pathophysiology that, in principle, should yield to mathematical treatments of (neuronal) ensemble dynamics - and therefore interventions on stochastic chaos. A seizure can be characterised as a deviation of neural activity from a stable dynamical regime, i.e. one in which signals fluctuate only within a limited range. In silico treatments of neural activity are an important tool for understanding how the brain can achieve stability, as well as how pathology can lead to seizures and potential strategies for mitigating instabilities, e.g. via exte…
Patients with idiopathic generalised epilepsy (IGE) typically have normal conventional magnetic resonance imaging (MRI), hence MRI based diagnosis is challenging. Anatomical abnormalities underlying brain dysfunctions in IGE are unclear and their relation to the pathomechanisms of epileptogenesis is poorly understood. In this study, we applied connectometry, an advanced quantitative neuroimaging technique for investigating localised changes in white-matter tissue. Analysing white matter structures of 32 subjects we incorporated our findings in a computational model of seizure dynamics to sugge…
Epilepsy is a disorder characterised by spontaneous, recurrent seizures. Both local and network abnormalities have been associated with epilepsy, and the exact processes generating seizures are thought to be heterogeneous and patient-specific. Due to the heterogeneity, treatments such as surgery and medication are not always effective in achieving full seizure control and choosing the best treatment for the individual patient can be challenging. Predictive models constrained by the patient's own data therefore offer the potential to assist in clinical decision making. In this chapter, we descr…
Modularity is an important topological attribute for functional brain networks. Recent studies have reported that modularity of functional networks varies not only across individuals being related to demographics and cognitive performance, but also within individuals co-occurring with fluctuations in network properties of functional connectivity, estimated over short time intervals. However, characteristics of these time-resolved functional networks during periods of high and low modularity have remained largely unexplored. In this study we investigate spatiotemporal properties of time-resolve…
In cognitive network neuroscience, the connectivity and community structure of the brain network is related to cognition. Much of this research has focused on two measures of connectivity - modularity and flexibility - which frequently have been examined in isolation. By using resting state fMRI data from 52 young adults, we investigate the relationship between modularity, flexibility and performance on cognitive tasks. We show that flexibility and modularity are highly negatively correlated. However, we also demonstrate that flexibility and modularity make unique contributions to explain task…
Neuroimaging data can be represented as networks of nodes and edges that capture the topological organization of the brain connectivity. Graph theory provides a general and powerful framework to study these networks and their structure at various scales. By way of example, community detection methods have been widely applied to investigate the modular structure of many natural networks, including brain functional connectivity networks. Sparsification procedures are often applied to remove the weakest edges, which are the most affected by experimental noise, and to reduce the density of the gra…
We investigate the relationship of resting-state fMRI functional connectivity estimated over long periods of time with time-varying functional connectivity estimated over shorter time intervals. We show that using Pearson's correlation to estimate functional connectivity implies that the range of fluctuations of functional connections over short time scales is subject to statistical constraints imposed by their connectivity strength over longer scales. We present a method for estimating time-varying functional connectivity that is designed to mitigate this issue and allows us to identify episo…
Criticality has been conjectured as an integral part of neuronal network dynamics. Operating at a critical threshold requires precise parameter tuning and a corresponding mechanism remains an open question. Recent studies have suggested that topological features observed in brain networks give rise to a Griffiths phase, leading to power-laws in brain activity dynamics and the operational benefits of criticality in an extended parameter region. Motivated by growing evidence of neural correlates of different states of consciousness, we investigate how topological changes affect the expression of…
The human brain network is modular--comprised of communities of tightly interconnected nodes. This network contains local hubs, which have many connections within their own communities, and connector hubs, which have connections diversely distributed across communities. A mechanistic understanding of these hubs and how they support cognition has not been demonstrated. Here, we leveraged individual differences in hub connectivity and cognition. We show that a model of hub connectivity accurately predicts the cognitive performance of 476 individuals in four distinct tasks. Moreover, there is a g…
Desynchronization Index: a New Connectivity Approach for Exploring Epileptogenic Networks
University of Padova（帕多瓦大学）；IRCCS Institute of Neurological Sciences of Bologna（博洛尼亚神经科学研究所）；European Reference Network for Rare and Complex Epilepsies (EpiCARE)（罕见和复杂癫痫欧洲参考网络（EpiCARE））；University of Bologna（博洛尼亚大学）；Claudio Munari Epilepsy and Parkinson Surgery Centre, Niguarda Hospital（尼瓜达医院克劳迪奥·穆纳里癫痫与帕金森病外科中心）；University of Parma（帕尔马大学）
Graph theory provides a powerful framework to investigate brain functional connectivity networks and their modular organization. However, most graph-based methods suffer from a fundamental resolution limit that may have affected previous studies and prevented detection of modules, or communities, that are smaller than a specific scale. Surprise, a resolution-limit-free function rooted in discrete probability theory, has been recently introduced and applied to brain networks, revealing a wide size-distribution of functional modules, in contrast with many previous reports. However, the use of Su…
Focal epilepsy is a devastating neurological disorder that affects an overwhelming number of patients worldwide, many of whom prove resistant to medication. The efficacy of current innovative technologies for the treatment of these patients has been stalled by the lack of accurate and effective methods to fuse multimodal neuroimaging data to map anatomical targets driving seizure dynamics. Here we propose a parsimonious model that explains how large-scale anatomical networks and shared genetic constraints shape inter-regional communication in focal epilepsy. In extensive ECoG recordings acquir…
The human brain displays rich communication dynamics that are thought to be particularly well-reflected in its marked community structure. Yet, the precise relationship between community structure in structural brain networks and the communication dynamics that can emerge therefrom is not well-understood. In addition to offering insight into the structure-function relationship of networked systems, such an understanding is a critical step towards the ability to manipulate the brain's large-scale dynamical activity in a targeted manner. We investigate the role of community structure in the cont…
This paper represents a contribution to the study of the brain functional connectivity from the perspective of complex networks theory. More specifically, we apply graph theoretical analyses to provide evidence of the modular structure of the mouse brain and to shed light on its hierarchical organization. We propose a novel percolation analysis and we apply our approach to the analysis of a resting-state functional MRI data set from 41 mice. This approach reveals a robust hierarchical structure of modules persistent across different subjects. Importantly, we test this approach against a statis…
This paper studies the link between resting-state functional connectivity (FC), measured by the correlations of the fMRI BOLD time courses, and structural connectivity (SC), estimated through fiber tractography. Instead of a static analysis based on the correlation between SC and the FC averaged over the entire fMRI time series, we propose a dynamic analysis, based on the time evolution of the correlation between SC and a suitably windowed FC. Assessing the statistical significance of the time series against random phase permutations, our data show a pronounced peak of significance for time wi…
For much of biology, the manner in which genotype maps to phenotype remains a fundamental mystery. The few maps that are known tend to show modular pleiotropy: sets of phenotypes are determined by distinct sets of genes. One key map that has evaded discovery is that of the human brain's network architecture. Here, we determine the form of this map for gene coexpression and single nucleotide polymorphisms. We discover that mostly non-overlapping sets of genes encode the connectivity of brain network modules (or so-called communities), suggesting that brain network communities demarcate genetic …
Network modularity is a key feature for efficient information processing in the human brain. This information processing is however dynamic and networks can reconfigure at very short time period, few hundreds of millisecond. This requires neuroimaging techniques with sufficient time resolution. Here we use the dense electroencephalography, EEG, source connectivity methods to identify cortical networks with excellent time resolution, in the order of millisecond. We identify functional networks during picture naming task. Two categories of visual stimuli were presented, meaningful (tools, animal…
Recently we developed a novel method for assessing the hierarchical modularity of functional brain networks - the probability associated community estimation(PACE). The PACE algorithm is unique in that it permits a dual formulation, thus yielding equivalent connectome modular structure regardless of whether considering positive or negative edges. This method was rigorously validated using F1000 and HCP data. We detected novel sex differences in resting-state connectivity that were not previously reported. This current study more thoroughly examined sex differences as a function of age and thei…
Monash University（莫纳什大学）；The University of Melbourne（墨尔本大学）
Objective Kalman filtering has previously been applied to track neural model states and parameters, particularly at the scale relevant to EEG. However, this approach lacks a reliable method to determine the initial filter conditions and assumes that the distribution of states remains Gaussian. This study presents an alternative, data-driven method to track the states and parameters of neural mass models (NMMs) from EEG recordings using deep learning techniques, specifically an LSTM neural network. Approach An LSTM filter was trained on simulated EEG data generated by a neural mass model using …
In this paper we utilized the concept of stable phase synchronization topography - synchrostates - over the scalp derived from EEG recording for formulating brain connectivity network in Autism Spectrum Disorder (ASD) and typically-growing children. A synchronization index is adapted for forming the edges of the connectivity graph capturing the stability of each of the synchrostates. Such network is formed for 11 ASD and 12 control group children. Comparative analyses of these networks using graph theoretic measures show that children with autism have a different modularity of such networks fr…
Connectivity patterns of relevance in neuroscience and systems biology can be encoded in hierarchical modular networks (HMNs). Moreover, recent studies highlight the role of hierarchical modular organization in shaping brain activity patterns, providing an excellent substrate to promote both the segregation and integration of neural information. Here we propose an extensive numerical analysis of the critical spreading rate (or "epidemic" threshold) --separating a phase with endemic persistent activity from one in which activity ceases-- on diverse HMNs. By employing analytical and computationa…
Neural networks modularity is a major challenge for the development of control circuits of neural activity. Under physiological limitations, the accessible regions for external stimulation are possibly different from the functionally relevant ones, requiring complex indirect control designs. Moreover, control over one region might affect activity of other downstream networks, once sparse connections exist. We address these questions by developing a hybrid device of a cortical culture functionally integrated with a biomimetic hardware neural network. This design enables the study of modular net…
Elucidating the intricate relationship between brain structure and function, both in healthy and pathological conditions, is a key challenge for modern neuroscience. Recent technical and methodological progress in neuroimaging has helped advance our understanding of this important issue, with diffusion weighted images providing information about structural connectivity (SC) and functional magnetic resonance imaging shedding light on resting state functional connectivity (rsFC). However, comparing these two distinct datasets, each of which can be encoded into a different complex network, is by …
