Spectroscopic Signature of Chemical Bond Dissociation Revealed by Calculated Core-Electron Spectra
Ludger Inhester, Zheng Li, Xiaolei Zhu, Nikita Medvedev, Thomas J. A. Wolf
备注：
This document is the unedited Author's version of a Submitted Work that was subsequently accepted for publication in The Journal of Physical Chemistry Letters, copyright (c) American Chemical Society after peer review. To access the final edited and published work see https://pubs.acs.org/articlesonrequest/AOR-Cvsg7nKYk4KJtQFRUb6I
The advent of ultrashort soft x-ray pulse sources permits the use of established gas phase spectroscopy methods to investigate ultrafast photochemistry in isolated molecules with element and site specificity. In the present study, we simulate excited state wavepacket dynamics of a prototypical process, the ultrafast photodissociation of methyl iodide. Based on the simulation, we calculate time-dependent excited state carbon edge photoelectron and Auger electron spectra. We observe distinct signatures in both types of spectra and show their direct connection to C-I bond dissociation and charge rearrangement processes in the molecule. We demonstrate at the CH$_3$I molecule that the observed signatures allow us to map the time-dependent dynamics of ultrafast photo-induced bond breaking with unprecedented details.
A two-orbital two-electron diatomic model resembling LiH is used to investigate the differences between the exact Löwdin-Shull and approximate Hartree-Fock-Bogoliubov and Baerends-Buijse density matrix functionals in the medium- to long-distance dissociation region. In case of homolytic dissociation (one electron on each atom), the approximate functionals fail to generate the correct energy due to a compromise between the Hartree-Fock component (which favors partial charge transfer) and the strong correlation component (which hampers charge transfer). The exact functional is able to generate t…
A one-electron Schroedinger equation based on special one-electron potentials for atoms is shown to exist that produces orbitals for an arbitrary molecule that are sufficiently accurate to be used without modification to construct single- and multi-determinant wavefunctions. The exact Hamiltonian is used to calculate the energy variationally and to generate configuration interaction expansions. Earlier work on equilibrium geometries is extended to larger basis sets and molecular dissociation. For a test set of molecules representing different bonding environments, a single set of invariant ato…
We report experimental results on three-dimensional momentum imaging measurements of anions generated via dissociative electron attachment to gaseous formamide. From the momentum images, we analyze the angular and kinetic energy distributions for NH$_2^{-}$, O$^{-}$, and H$^{-}$ fragments and discuss the possible electron attachment and dissociation mechanisms for multiple resonances for two ranges of incident electron energies, from 5.3~eV to 6.8~eV, and from 10.0~eV to 11.5~eV. {\it Ab initio} theoretical results for the angular distributions of the NH$_2^{-}$ anion for $\sim$6~eV incident e…
Hydrogen bonding interactions between biological chromophores and their surrounding protein and solvent environment significantly affect the photochemical pathways of the chromophore and its biological function. A common first step in the dynamics of these systems is excited state proton transfer between the non-covalently bound molecules, which stabilises the system against dissociation and principally alters relaxation pathways. Despite such fundamental importance, studying excited state proton transfer across a hydrogen bond has proven difficult, leaving uncertainties about the mechanism. T…
The object of this study is the kinetic process of solid-liquid first-order phase transition - melting of carbon dioxide CS-I hydrate with various cavity occupation ratios. The work was done within a framework of study on the local structure of water molecules. These include the time depending change of the short-range order at temperatures close to the melting point and comparison with hexagonal ice structure. Using molecular dynamics method, dependencies of the internal energy of the studied systems on the time of heating were found. Jumps in the internal energy of solids in the range at 275…
Monosubstituted nitrotoluenes serve as important model compounds for nitroaromatic energetic molecules such as trinitrotoluene. This work investigates the ultrafast nuclear dynamics of 3- and 4-nitrotoluene radical cations using femtosecond pump-probe measurements and the results of density functional theory calculations. Strong-field adiabatic ionization of 3- and 4-nitrotoluene using 1500 nm, 18 fs pulses produces radical cations in the ground electronic state with distinct coherent vibrational excitations. In both nitrotoluene isomers, a one-photon excitation with the probe pulse results in…
Linear response time dependent density functional theory (TDDFT), which builds upon configuration interaction singles (CIS) and TD-Hartree-Fock (TDHF), is the most widely used class of excited state quantum chemistry methods and is often employed to study photochemical processes. This paper studies the behavior of the resulting excited state potential energy surfaces beyond the Coulson-Fisher (CF) point in single bond dissociations, when the optimal reference determinant is spin-polarized. Many excited states exhibit sharp kinks at the CF point, and connect to different dissociation limits via…
Structural geometries, formation enthalpies, and dissociation energies of all diatomic and triatomic molecules consisting of the four basic elements C, H, N, and/or O are calculated from the projector augmented wave (PAW) density functional theory (DFT) method with the PBE and optB88-vdW exchange-correlation functionals. The calculations are also extended to two larger molecules NO3 and HNO3, which consist of 4 and 5 atoms, respectively. In total, 82 molecules or isomers are considered in the calculations. The geometric parameters including 42 bond lengths and 15 bond angles of these molecules…
Resolving electronic evolution during bond dissociation
University of Ottawa（渥太华大学）；National Research Council（国家研究委员会）；Joint Center for Extreme Photonics（极端光子学联合中心）；Wuhan Institute of Physics and Mathematics, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences（中国科学院精密测量科学与技术创新研究院武汉物理与数学研究所）；Department of Physics, University of Central Florida（中佛罗里达大学物理系）；CNR IFN - Istituto di Fotonica e Nanotecnologie（意大利国家研究委员会光子和纳米技术研究所）
Unrestricted DFT methods are typically expected to describe the homolytic dissociation of nonpolar single bonds in neutral species with qualitative accuracy, due to the lack of significant delocalization error. We however find that many widely used density functional approximations fail to describe features along the dissociation curve of the simple H$_2$ molecule. This is not an universal failure of DFT in the sense that many classic functionals like PBE and B3LYP give very reasonable results, as do some more modern methods like MS2. However, some other widely used functionals like B97-D (emp…
Hydrogen dissociation is an unwanted competing pathway if a torsional motion around the C=C double bond in a chiral fluoroethylene derivative, namely (4-methylcyclohexylidene) fluoromethane (4MCF), is to be achieved. We show that the excited state H-dissociation can be drastically diminished on timescales long enough to initiate a torsion around the C=C double bond using the non-resonant dynamic Stark effect. Potential energy curves, dipoles and polarizabilities for the regarded one-dimensional reaction coordinate are calculated within the CASSCF method. The influence of the excitation and the…
Löwdin's symmetry dilemma is an ubiquitous issue in approximate quantum chemistry. In the context of Hartree-Fock (HF) theory, the use of Slater determinants with some imposed constraints to preserve symmetries of the exact problem may lead to physically unreasonable potential energy surfaces. On the other hand, lifting these constraints leads to the so-called broken symmetry solutions that usually provide better energetics, at the cost of losing information about good quantum numbers that describe the state of the system. This behavior has been previously extensively studied in the context of…
A detailed computational analysis has been performed, considering copper atomic contacts that are exposed directly to water molecules, hydroxyl groups, and monatomic as well as molecular hydrogen and oxygen species. The optimized physical bonding structure, electrical conductance and inelastic tunneling spectra (IETS) have been determined theoretically for moderately large structures by performing appropriate ab-initio and semi-empirical calculations. By considering the aforementioned properties, it has been possible to determine that some of the molecular bridging structures may be regarded a…
We have investigated the structural dynamics in photoexcited 1,2-diiodotetrafluoroethane molecules (C2F4I2) in the gas phase experimentally using ultrafast electron diffraction and theoretically using FOMO-CASCI excited state dynamics simulations. The molecules are excited by an ultra-violet femtosecond laser pulse to a state characterized by a transition from the iodine 5p orbital to a mixed 5p|| hole and CF2 antibonding orbital, which results in the cleavage of one of the carbon-iodine bonds. We have observed, with sub-Angstrom resolution, the motion of the nuclear wavepacket of the dissocia…
We report the results of a joint experimental {and} theoretical study of dissociative electron attachment to formic acid (HCOOH) in the 6-9 eV region, where H$^-$ fragment ions are a dominant product. Breaking of the CH and OH bonds is distinguished experimentally by deuteration of either site. We show that in this region H$^-$ ions can be produced by formation of two {or possibly three} Feshbach resonance (doubly-excited anion) states, one of which leads to either C-H or O-H bond scission, while the other can only produce formyloxyl radicals by O-H bond scission. Comparison of experimental an…
Polyatomic molecules in strong laser fields can undergo substantial nuclear motion within tens of femtoseconds. Ion imaging methods based on dissociation or Coulomb explosion therefore have difficulty faithfully recording the geometry dependence of the field ionization that initiates the dissociation process. Here we compare the strong-field double ionization and subsequent dissociation of water (both H$_2$O and D$_2$O) in 10-fs and 40-fs 800-nm laser pulses. We find that 10-fs pulses turn off before substantial internuclear motion occurs, whereas rapid internuclear motion can take place durin…
Understanding current-induced bond rupture in single-molecule junctions is both of fundamental interest and a prerequisite for the design of molecular junctions, which are stable at higher bias voltages. In this work, we use a fully quantum mechanical method based on the hierarchical quantum master equation approach to analyze the dissociation mechanisms in molecular junctions. Considering a wide range of transport regimes, from off-resonant to resonant, non-adiabatic to adiabatic transport, and weak to strong vibronic coupling, our systematic study identifies three dissociation mechanisms. In…
Compact two-electron wave function for bond dissociation and Van der Waals interactions: A natural amplitude assessment
Electron correlations in molecules can be divided in short range dynamical correlations, long range Van der Waals type interactions and near degeneracy static correlations. In this work we analyze for a one-dimensional model of a two-electron system how these three types of correlations can be incorporated in a simple wave function of restricted functional form consisting of an orbital product multiplied by a single correlation function $f(r_{12})$ depending on the interelectronic distance $r_{12}$ . Since the three types of correlations mentioned lead to different signatures in terms of the n…
Chemical bonding is the stabilization of a composite molecular system caused by different interactions in and between the subsystems, among the strong kinds of bonding is covalent bonding especially important. Characteristic for covalent bonding are small atom groups with short distances between the involved atoms, indicating that covalent bonding is essentially a local effect, according to Lewis, this is caused by shared electron pairs. However, the energetic stabilization is an approximately additive one-electron effect, as was shown by Ruedenberg and coworkers. In systems composed of many-e…
Recently it has been proposed that the positron, the anti-particle analog of the electron, is capable of forming an anti-matter bond in a composite system of two hydride anions and a positron [Angew. Chem. Int. Ed. 57, 8859 (2018)]. In order to dig into the nature of this novel bond the newly developed multi-component quantum theory of atoms in molecules is applied to this positronic system. The topological analysis reveals that this species is composed of two atoms in molecules, each containing a proton and half of the electronic and the positronic populations. Further analysis elucidates tha…
Towards more accurate natural orbital functional approximations: including 4-index cumulant contributions
McMaster University（麦克马斯特大学）；Donostia International Physics Center (DIPC)（圣塞巴斯蒂安国际物理中心）；Ikerbasque Foundation for Science（伊卡巴萨克科学基金会）；Euskal Herriko Unibertsitatea EHU（巴斯克大学）
Different Rise Times of Atomic Br M$_{4,5}$ 3d$_{3/2,5/2}$ Core Level Absorptions during Br$_{2}$ C $^{1}Π_{u}$ $1_{u}$ State Dissociation via Extreme Ultraviolet Transient Absorption Spectroscopy
