Throughout the world, breast cancer is one of the leading causes of female death. Recently, deep learning methods are developed to automatically grade breast cancer of histological slides. However, the performance of existing deep learning models is limited due to the lack of large annotated biomedical datasets. One promising way to relieve the annotating burden is to leverage the unannotated datasets to enhance the trained model. In this paper, we first apply active learning method in breast cancer grading, and propose a semi-supervised framework based on expectation maximization (EM) model. The proposed EM approach is based on the collaborative filtering among the annotated and unannotated datasets. The collaborative filtering method effectively extracts useful and credible datasets from the unannotated images. Results of pixel-wise prediction of whole-slide images (WSI) demonstrate that the proposed method not only outperforms state-of-art methods, but also significantly reduces the annotation cost by over 70%.
Higher School of Applied Sciences of Tlemcen(特莱姆森应用科学高等学院);USTHB University(USTHB大学);University of Mons(蒙斯大学);University Hospital Center of Tlemcen(特莱姆森大学医院中心);Tlemcen University(特莱姆森大学)
Computer aided detection and diagnosis systems based on deep learning have shown promising performance in breast cancer detection. However, there are cases where the obtained results lack justification. In this study, our objective is to highlight the regions of interest used by a convolutional neural network (CNN) for classifying histological images as benign or malignant. We compare these regions with the regions identified by pathologists. To achieve this, we employed the VGG19 architecture and tested three visualization methods: Gradient, LRP Z, and LRP Epsilon. Additionally, we experiment…
The Harker School(哈克学校);Beth Israel Deaconess Medical Center(贝斯以色列女执事医疗中心)
Current analysis of tumor proliferation, the most salient prognostic biomarker for invasive breast cancer, is limited to subjective mitosis counting by pathologists in localized regions of tissue images. This study presents the first data-driven integrative approach to characterize the severity of tumor growth and spread on a categorical and molecular level, utilizing multiple biologically salient deep learning classifiers to develop a comprehensive prognostic model. Our approach achieves pathologist-level performance on three-class categorical tumor severity prediction. It additionally pionee…
Indian Institute of Technology Kharagpur(印度理工学院卡拉格普尔分校);Techno India University(印度科技大学)
Histopathological images (HI) encrypt resolution dependent heterogeneous textures & diverse color distribution variability, manifesting in micro-structural surface tissue convolutions. Also, inherently high coherency of cancerous cells poses significant challenges to breast cancer (BC) multi-classification. As such, multi-class stratification is sparsely explored & prior work mainly focus on benign & malignant tissue characterization only, which forestalls further quantitative analysis of subordinate classes like adenosis, mucinous carcinoma & fibroadenoma etc, for diagnostic competence. In th…
The diagnosed cases of Breast cancer is increasing annually and unfortunately getting converted into a high mortality rate. Cancer, at the early stages, is hard to detect because the malicious cells show similar properties (density) as shown by the non-malicious cells. The mortality ratio could have been minimized if the breast cancer could have been detected in its early stages. But the current systems have not been able to achieve a fully automatic system which is not just capable of detecting the breast cancer but also can detect the stage of it. Estimation of malignancy grading is importan…
Grading breast density is highly sensitive to normalization settings of digital mammogram as the density is tightly correlated with the distribution of pixel intensity. Also, the grade varies with readers due to uncertain grading criteria. These issues are inherent in the density assessment of digital mammography. They are problematic when designing a computer-aided prediction model for breast density and become worse if the data comes from multiple sites. In this paper, we proposed two novel deep learning techniques for breast density prediction: 1) photometric transformation which adaptively…
Department of Electrical and Electronics Engineering, Shiraz University of Technology(设拉子理工大学电气与电子工程系);Department of Pathology, School of Medicine, Shiraz University of Medical Sciences(设拉子医科大学医学院病理学系)
Early detection and prognosis of breast cancer are feasible by utilizing histopathological grading of biopsy specimens. This research is focused on detection and grading of nuclear pleomorphism in histopathological images of breast cancer. The proposed method consists of three internal steps. First, unmixing colors of H&E is used in the preprocessing step. Second, nuclei boundaries are extracted incorporating the center of cancerous nuclei which are detected by applying morphological operations and Difference of Gaussian filter on the preprocessed image. Finally, segmented nuclei are scored to…
University of Heidelberg(海德堡大学);DKFZ Heidelberg(海德堡德国癌症研究中心)
The progression of breast cancer can be quantified in lymph node whole-slide images (WSIs). We describe a novel method for effectively performing classification of whole-slide images and patient level breast cancer grading. Our method utilises a deep neural network. The method performs classification on small patches and uses model averaging for boosting. In the first step, region of interest patches are determined and cropped automatically by color thresholding and then classified by the deep neural network. The classification results are used to determine a slide level class and for further …
Predicting TNM stage is the major determinant of breast cancer prognosis and treatment. The essential part of TNM stage classification is whether the cancer has metastasized to the regional lymph nodes (N-stage). Pathologic N-stage (pN-stage) is commonly performed by pathologists detecting metastasis in histological slides. However, this diagnostic procedure is prone to misinterpretation and would normally require extensive time by pathologists because of the sheer volume of data that needs a thorough review. Automated detection of lymph node metastasis and pN-stage prediction has a great pote…
Technische Universität München(慕尼黑工业大学);Johns Hopkins University(约翰斯·霍普金斯大学)
Digitized Histological diagnosis is in increasing demand. However, color variations due to various factors are imposing obstacles to the diagnosis process. The problem of stain color variations is a well-defined problem with many proposed solutions. Most of these solutions are highly dependent on a reference template slide. We propose a deep-learning solution inspired by CycleGANs that is trained end-to-end, eliminating the need for an expert to pick a representative reference slide. Our approach showed superior results quantitatively and qualitatively against the state of the art methods (10%…
Experts' cognition-driven ensemble deep learning for external validation of predicting pathological complete response to neoadjuvant chemotherapy from histological images in breast cancer
Sichuan University(四川大学);West China Hospital(华西医院);Zhongjiu Flash Medical Technology Co., Ltd.(中久闪医医疗科技有限公司);Shanxi Provincial Cancer Hospital(山西省肿瘤医院);Sichuan Provincial People’s Hospital(四川省人民医院);The Affiliated Hospital of Southwest Medical University(西南医科大学附属医院)
We propose a patch sampling strategy based on a sequential Monte-Carlo method for high resolution image classification in the context of Multiple Instance Learning. When compared with grid sampling and uniform sampling techniques, it achieves higher generalization performance. We validate the strategy on two artificial datasets and two histological datasets for breast cancer and sun exposure classification.
The analysis of FFPE tissue sections stained with haematoxylin and eosin (H&E) or immunohistochemistry (IHC) is an essential part of the pathologic assessment of surgically resected breast cancer specimens. IHC staining has been broadly adopted into diagnostic guidelines and routine workflows to manually assess status and scoring of several established biomarkers, including ER, PGR, HER2 and KI67. However, this is a task that can also be facilitated by computational pathology image analysis methods. The research in computational pathology has recently made numerous substantial advances, often …
Leveraging Medical Foundation Model Features in Graph Neural Network-Based Retrieval of Breast Histopathology Images
Artificial Intelligence Department, Faculty of Computer Engineering, University of Isfahan, Isfahan, Iran;Department of Computer Engineering Techniques, Mazaya University College, Nasiriyah, Iraq;Department of Medicine, Danube Private University, Krems an der Donau, Austria;Austrian Center for Medical Innovation;Research Center for Medical Image Analysis;Artificial Intelligence, Department of Medicine, Danube Private University, Krems an der Donau, Austria
Techno India University, West Bengal(西孟加拉邦Techno印度大学)
In this paper we present a novel method for an automated diagnosis of breast carcinoma through multilevel iterative variational mode decomposition (VMD) and textural features encompassing Zernaike moments, fractal dimension and entropy features namely, Kapoor entropy, Renyi entropy, Yager entropy features are extracted from VMD components. The proposed method considers the histopathological image as a set of multidimensional spatially-evolving signals. ReliefF algorithm is used to select the discriminatory features and statistically most significant features are fed to squares support vector m…
Islamic Azad University(伊斯兰阿扎德大学);Kharazmi University of Tehran(德黑兰哈拉兹米大学);Islamic Azad University Science and Research Branch(伊斯兰阿扎德大学科学与研究分校)
Breast cancer has become one of the most prevalent cancers by which people all over the world are affected and is posed serious threats to human beings, in a particular woman. In order to provide effective treatment or prevention of this cancer, disease diagnosis in the early stages would be of high importance. There have been various methods to detect this disorder in which using images have to play a dominant role. Deep learning has been recently adopted widely in different areas of science, especially medicine. In breast cancer detection problems, some diverse deep learning techniques have …
Eindhoven University of Technology(埃因霍温理工大学);University Medical Center Utrecht(乌得勒支大学医学中心);University Utrecht(乌得勒支大学);Harvard Medical School(哈佛医学院);Beth Israel Deaconess Medical Center(贝斯以色列女执事医疗中心)
Ductal carcinoma in situ (DCIS) is a non-invasive breast cancer that can progress into invasive ductal carcinoma (IDC). Studies suggest DCIS is often overtreated since a considerable part of DCIS lesions may never progress into IDC. Lower grade lesions have a lower progression speed and risk, possibly allowing treatment de-escalation. However, studies show significant inter-observer variation in DCIS grading. Automated image analysis may provide an objective solution to address high subjectivity of DCIS grading by pathologists. In this study, we developed a deep learning-based DCIS grading sys…
Friedrich-Alexander-Universität Erlangen-Nürnberg(弗里德里希-亚历山大大学埃尔兰根-纽伦堡分校);Freie Universität Berlin(柏林自由大学);Animal Medical Center(动物医学中心)
Canine mammary carcinoma (CMC) has been used as a model to investigate the pathogenesis of human breast cancer and the same grading scheme is commonly used to assess tumor malignancy in both. One key component of this grading scheme is the density of mitotic figures (MF). Current publicly available datasets on human breast cancer only provide annotations for small subsets of whole slide images (WSIs). We present a novel dataset of 21 WSIs of CMC completely annotated for MF. For this, a pathologist screened all WSIs for potential MF and structures with a similar appearance. A second expert blin…
Automatization of the diagnosis of any kind of disease is of great importance and it's gaining speed as more and more deep learning solutions are applied to different problems. One of such computer aided systems could be a decision support too able to accurately differentiate between different types of breast cancer histological images - normal tissue or carcinoma. In this paper authors present a deep learning solution, based on convolutional capsule network for classification of four types of images of breast tissue biopsy when hematoxylin and eusin staining is applied. The cross-validation a…
MOAB: Multi-Modal Outer Arithmetic Block For Fusion Of Histopathological Images And Genetic Data For Brain Tumor Grading
School of Electronic Engineering and Computer Science, Queen Mary University of London(伦敦玛丽女王大学电子工程与计算机科学学院);Queen Mary's Digital Environment Research Institute (DERI)(伦敦玛丽女王大学数字环境研究所(DERI))
University of Saskatchewan(萨斯喀彻温大学);University of Tulane(杜兰大学)
Breast cancer is one of the most common causes of cancer-related death in women worldwide. Early and accurate diagnosis of breast cancer may significantly increase the survival rate of patients. In this study, we aim to develop a fully automatic, deep learning-based, method using descriptor features extracted by Deep Convolutional Neural Network (DCNN) models and pooling operation for the classification of hematoxylin and eosin stain (H&E) histological breast cancer images provided as a part of the International Conference on Image Analysis and Recognition (ICIAR) 2018 Grand Challenge on BreAs…
Mansoura University(曼苏拉大学);Higher Institute of Engineering and Technology(高等工程技术学院)
Breast cancer is one of the most serious types of cancer that can occur in women. The automatic diagnosis of breast cancer by analyzing histological images (HIs) is important for patients and their prognosis. The classification of HIs provides clinicians with an accurate understanding of diseases and allows them to treat patients more efficiently. Deep learning (DL) approaches have been successfully employed in a variety of fields, particularly medical imaging, due to their capacity to extract features automatically. This study aims to classify different types of breast cancer using HIs. In th…
Studies estimate that there will be 266,120 new cases of invasive breast cancer and 40,920 breast cancer induced deaths in the year of 2018 alone. Despite the pervasiveness of this affliction, the current process to obtain an accurate breast cancer prognosis is tedious and time consuming, requiring a trained pathologist to manually examine histopathological images in order to identify the features that characterize various cancer severity levels. We propose MITOS-RCNN: a novel region based convolutional neural network (RCNN) geared for small object detection to accurately grade one of the thre…
Instituto de Investigación e Innovación en Bioingeniería, Universitat Politècnica de València(瓦伦西亚理工大学生物工程研究与创新研究所);Hospital Universitario y Politécnico La Fe(拉费大学理工医院)
Recently, bladder cancer has been significantly increased in terms of incidence and mortality. Currently, two subtypes are known based on tumour growth: non-muscle invasive (NMIBC) and muscle-invasive bladder cancer (MIBC). In this work, we focus on the MIBC subtype because it is of the worst prognosis and can spread to adjacent organs. We present a self-learning framework to grade bladder cancer from histological images stained via immunohistochemical techniques. Specifically, we propose a novel Deep Convolutional Embedded Attention Clustering (DCEAC) which allows classifying histological pat…
A Preliminary Investigation into Search and Matching for Tumour Discrimination in WHO Breast Taxonomy Using Deep Networks
Mayo Clinic(梅奥诊所);University of Waterloo(滑铁卢大学);University of Pittsburgh Medical Center(匹兹堡大学医学中心);Luma Medical Centre(卢玛医疗中心);International Agency for Research on Cancer(国际癌症研究机构);Rhazes Lab, Department of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, MN, USA(梅奥诊所Rhazes实验室(人工智能与信息学系));Kimia Lab, University of Waterloo, Canada(滑铁卢大学Kimia实验室)
Histopathological characterization of colorectal polyps allows to tailor patients' management and follow up with the ultimate aim of avoiding or promptly detecting an invasive carcinoma. Colorectal polyps characterization relies on the histological analysis of tissue samples to determine the polyps malignancy and dysplasia grade. Deep neural networks achieve outstanding accuracy in medical patterns recognition, however they require large sets of annotated training images. We introduce UniToPatho, an annotated dataset of 9536 hematoxylin and eosin (H&E) stained patches extracted from 292 whole-…
Brunel University(布鲁内尔大学);University College London(伦敦大学学院)
Pancreatic cancers have one of the worst prognoses compared to other cancers, as they are diagnosed when cancer has progressed towards its latter stages. The current manual histological grading for diagnosing pancreatic adenocarcinomas is time-consuming and often results in misdiagnosis. In digital pathology, AI-based cancer grading must be extremely accurate in prediction and uncertainty quantification to improve reliability and explainability and are essential for gaining clinicians trust in the technology. We present Bayesian Convolutional Neural Networks for automated pancreatic cancer gra…
Radboud University Medical Center(拉德堡德大学医学中心);Canisius-Wilhelmina Hospital(卡尼修斯-威廉明娜医院);Jeroen Bosch Hospital(耶伦博斯医院)
Manual counting of mitotic tumor cells in tissue sections constitutes one of the strongest prognostic markers for breast cancer. This procedure, however, is time-consuming and error-prone. We developed a method to automatically detect mitotic figures in breast cancer tissue sections based on convolutional neural networks (CNNs). Application of CNNs to hematoxylin and eosin (H&E) stained histological tissue sections is hampered by: (1) noisy and expensive reference standards established by pathologists, (2) lack of generalization due to staining variation across laboratories, and (3) high compu…
We propose a virtual staining methodology based on Generative Adversarial Networks to map histopathology images of breast cancer tissue from H&E stain to PHH3 and vice versa. We use the resulting synthetic images to build Convolutional Neural Networks (CNN) for automatic detection of mitotic figures, a strong prognostic biomarker used in routine breast cancer diagnosis and grading. We propose several scenarios, in which CNN trained with synthetically generated histopathology images perform on par with or even better than the same baseline model trained with real images. We discuss the potentia…
The size of nuclei in histological preparations from excised breast tumors is predictive of patient outcome (large nuclei indicate poor outcome). Pathologists take into account nuclear size when performing breast cancer grading. In addition, the mean nuclear area (MNA) has been shown to have independent prognostic value. The straightforward approach to measuring nuclear size is by performing nuclei segmentation. We hypothesize that given an image of a tumor region with known nuclei locations, the area of the individual nuclei and region statistics such as the MNA can be reliably computed direc…
University of California San Diego(加州大学圣迭戈分校);Mayo Clinic(妙佑医疗国际)
An optical microscopic examination of thinly cut stained tissue on glass slides prepared from a FFPE tissue blocks is the gold standard for tissue diagnostics. In addition, the diagnostic abilities and expertise of any pathologist is dependent on their direct experience with common as well as rarer variant morphologies. Recently, deep learning approaches have been used to successfully show a high level of accuracy for such tasks. However, obtaining expert-level annotated images is an expensive and time-consuming task and artificially synthesized histological images can prove greatly beneficial…
University of Cambridge(剑桥大学);Beijing Institute of Technology(北京理工大学)
Whole slide images (WSI) provide valuable phenotypic information for histological assessment and malignancy grading of tumors. The WSI-based grading promises to provide rapid diagnostic support and facilitate digital health. Currently, the most commonly used WSIs are derived from formalin-fixed paraffin-embedded (FFPE) and Frozen section. The majority of automatic tumor grading models are developed based on FFPE sections, which could be affected by the artifacts introduced by tissue processing. The frozen section exists problems such as low quality that might influence training within single m…
Improved Breast Cancer Diagnosis through Transfer Learning on Hematoxylin and Eosin Stained Histology Images
TIB - Leibniz Information Center for Science and Technology(莱布尼茨科学技术信息中心(TIB));CARESAI;Cairo University(开罗大学);University of Tasmania(塔斯马尼亚大学);Obafemi Awolowo University(奥巴费米·阿沃洛沃大学)
The Gleason grading system using histological images is the most powerful diagnostic and prognostic predictor of prostate cancer. The current standard inspection is evaluating Gleason H&E-stained histopathology images by pathologists. However, it is complicated, time-consuming, and subject to observers. Deep learning (DL) based-methods that automatically learn image features and achieve higher generalization ability have attracted significant attention. However, challenges remain especially using DL to train the whole slide image (WSI), a predominant clinical source in the current diagnostic s…
Radboud University Medical Center(拉德堡德大学医学中心);GZA-ZNA Hospitals(GZA-ZNA医院);Peter Mac Callum Cancer Centre(彼得·麦卡勒姆癌症中心);Mayo Clinic(梅奥诊所);Medipath & American Hospital of Paris(Medipath与巴黎美国医院);Canisius Wilhelmina Ziekenhuis(卡尼修斯·威廉米娜医院);University of Porto(波尔图大学);The Netherlands Cancer Institute(荷兰癌症研究所);Technical University Munich(慕尼黑工业大学);Hannover Medical School(汉诺威医学院)
Nuclear pleomorphism, defined herein as the extent of abnormalities in the overall appearance of tumor nuclei, is one of the components of the three-tiered breast cancer grading. Given that nuclear pleomorphism reflects a continuous spectrum of variation, we trained a deep neural network on a large variety of tumor regions from the collective knowledge of several pathologists, without constraining the network to the traditional three-category classification. We also motivate an additional approach in which we discuss the additional benefit of normal epithelium as baseline, following the routin…
A Multicentric Dataset for Training and Benchmarking Breast Cancer Segmentation in H&E Slides
Department of Pathology, Radboud University Medical Center(病理学系,拉德堡德大学医学中心);Fondazione Bruno Kessler(布鲁诺·凯塞勒基金会);Department of Cellular, Computational and Integrative Biology, University of Trento(细胞、计算与整合生物学系,特伦托大学);Biopticka Laboratory Ltd.(Biopticka实验室有限公司);Department of Pathology, Faculty of Medicine in Pilsen, Charles University(病理学系,皮尔森医学院,查尔斯大学);University of Washington Medical Center(华盛顿大学医学中心);Department of Surgical Pathology, Santa Chiara Hospital, APSS(外科病理学系,圣查理医院,APSS);CISMed - Centre for Medical Sciences, University of Trento(CISMed医学研究中心,特伦托大学);Pathology Unit, University and Hospital Trust of Verona(病理学部,韦罗纳大学与医院信托);IRCCS Sacro Cuore Don Calabria Hospital(IRCCS圣心多玛利亚医院)
Breast cancer is the most commonly diagnosed cancer worldwide, with over two million new cases each year. During diagnostic tumour grading, pathologists manually count the number of dividing cells (mitotic figures) in biopsy or tumour resection specimens. Since the process is subjective and time-consuming, data-driven artificial intelligence (AI) methods have been developed to automatically detect mitotic figures. However, these methods often generalise poorly, with performance reduced by variations in tissue types, staining protocols, or the scanners used to digitise whole-slide images. Domai…
PIEAS(巴基斯坦工程与应用科学学院);Islamia College Peshawar(白沙瓦伊斯兰学院)
Empirical evaluation of breast tissue biopsies for mitotic nuclei detection is considered an important prognostic biomarker in tumor grading and cancer progression. However, automated mitotic nuclei detection poses several challenges because of the unavailability of pixel-level annotations, different morphological configurations of mitotic nuclei, their sparse representation, and close resemblance with non-mitotic nuclei. These challenges undermine the precision of the automated detection model and thus make detection difficult in a single phase. This work proposes an end-to-end detection syst…
University of Memphis(孟菲斯大学);Microsoft Research(微软研究院);AutoML Image Lab(AutoML图像实验室)
Breast Cancer is the most prevalent cancer in the world. The World Health Organization reports that the disease still affects a significant portion of the developing world citing increased mortality rates in the majority of low to middle income countries. The most popular protocol pathologists use for diagnosing breast cancer is the Nottingham grading system which grades the proliferation of tumors based on 3 major criteria, the most important of them being mitotic cell count. The way in which pathologists evaluate mitotic cell count is to subjectively and qualitatively analyze cells present i…
University of Geneva (UNIGE)(日内瓦大学);University of Applied Sciences Western Switzerland (HES-SO)(瑞士西部应用科学大学)
Explanations for deep neural network predictions in terms of domain-related concepts can be valuable in medical applications, where justifications are important for confidence in the decision-making. In this work, we propose a methodology to exploit continuous concept measures as Regression Concept Vectors (RCVs) in the activation space of a layer. The directional derivative of the decision function along the RCVs represents the network sensitivity to increasing values of a given concept measure. When applied to breast cancer grading, nuclei texture emerges as a relevant concept in the detecti…
University of Warwick(华威大学);Tissue Image Analytics (TIA) Centre, University of Warwick(华威大学组织图像分析中心)
The problem of recognizing various types of tissues present in multi-gigapixel histology images is an important fundamental pre-requisite for downstream analysis of the tumor microenvironment in a bottom-up analysis paradigm for computational pathology. In this paper, we propose a deep dictionary learning approach to solve the problem of tissue phenotyping in histology images. We propose deep Multi-Resolution Dictionary Learning (deepMRDL) in order to benefit from deep texture descriptors at multiple different spatial resolutions. We show the efficacy of the proposed approach through extensive…
Predicting Neoadjuvant Chemotherapy Response in Triple-Negative Breast Cancer Using Pre-Treatment Histopathologic Images
The Ohio State University(俄亥俄州立大学);University of Rochester Medical Center(罗切斯特大学医学中心);Warren Alpert Medical School of Brown University(布朗大学沃伦·阿尔珀特医学院);Lifespan Academic Medical Center(Lifespan学术医学中心);University of Alabama at Birmingham(阿拉巴马大学伯明翰分校)
Stanford School of Medicine(斯坦福医学院);Center for Artificial Intelligence in Medicine & Imaging(医学与人工智能中心);Department of Urology(泌尿外科);Institute for Pathology and Cytology, Schüttorf(许特霍夫病理与细胞研究所);Department of Radiology(放射科);Department of Biomedical Data Science(生物医学数据科学系)
Different convolutional neural network (CNN) models have been tested for their application in histological image analyses. However, these models are prone to overfitting due to their large parameter capacity, requiring more data or valuable computational resources for model training. Given these limitations, we introduced a novel architecture (termed PlexusNet). We utilized 310 Hematoxylin and Eosin stained (H&E) annotated histological images of prostate cancer cases from TCGA-PRAD and Stanford University and 398 H&E whole slides images from the Camelyon 2016 challenge. PlexusNet-architecture …
GIM-ENDO: A Multimodal Endoscopic Image and Video Dataset for Gastric Intestinal Metaplasia Morphology and Pathology
Gastroenterology and Liver Disease Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences(沙希德·贝赫什提医科大学胃肠病与肝病研究中心,胃肠病与肝病研究所);Iran University of Medical Sciences(伊朗医科大学);Shiraz University of Medical Sciences(设拉子医科大学);Gastroenterology Department, Amiralam Hospital, Tehran University of Medical Sciences(德黑兰医科大学阿米拉拉姆医院胃肠病科);Department of Computer Engineering, Science and Research Branch, Islamic Azad University(伊斯兰阿扎德大学科学与研究分校计算机工程系)
Freie Universität Berlin(柏林自由大学);Animal Medical Center(动物医学中心);Roche Pharma Research and Early Development (pRED)(罗氏制药研究与早期开发部(pRED));Friedrich-Alexander-Universität Erlangen-Nürnberg(埃尔朗根-纽伦堡弗里德里希-亚历山大大学);Technische Hochschule Ingolstadt(英戈尔施塔特工业大学)
Tumor cells with two nuclei (binucleated cells, BiNC) or more nuclei (multinucleated cells, MuNC) indicate an increased amount of cellular genetic material which is thought to facilitate oncogenesis, tumor progression and treatment resistance. In canine cutaneous mast cell tumors (ccMCT), binucleation and multinucleation are parameters used in cytologic and histologic grading schemes (respectively) which correlate with poor patient outcome. For this study, we created the first open source data-set with 19,983 annotations of BiNC and 1,416 annotations of MuNC in 32 histological whole slide imag…