The progression of breast cancer can be quantified in lymph node whole-slide images (WSIs). We describe a novel method for effectively performing classification of whole-slide images and patient level breast cancer grading. Our method utilises a deep neural network. The method performs classification on small patches and uses model averaging for boosting. In the first step, region of interest patches are determined and cropped automatically by color thresholding and then classified by the deep neural network. The classification results are used to determine a slide level class and for further aggregation to predict a patient level grade. Fast processing speed of our method enables high throughput image analysis.
Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer
Stony Brook University(石溪大学);Stony Brook Medicine(石溪医学院);Stony Brook University Hospital(石溪大学医院);University of Michigan Medical School(密歇根大学医学院);National Cancer Institute(美国国家癌症研究所);National Institutes of Health(美国国立卫生研究院);Emory University(埃默里大学)
PathoNet: Deep learning assisted evaluation of Ki-67 and tumor infiltrating lymphocytes (TILs) as prognostic factors in breast cancer; A large dataset and baseline
Shiraz University(设拉子大学);Koc University(科奇大学);Shiraz University of Medical Sciences(设拉子医科大学)
An integrated geometric quantification and shape analysis framework for axillary lymph node metastasis in breast cancer patients
Central South University(中南大学);The Second Xiangya Hospital, Central South University(中南大学湘雅二医院);Clinical Research Center for Breast Disease in Hunan Province(湖南省乳腺疾病临床研究中心);The Chinese University of Hong Kong(香港中文大学)
Automating tumor-infiltrating lymphocyte assessment in breast cancer histopathology images using QuPath: a transparent and accessible machine learning pipeline
UiT The Arctic University of Norway(挪威北极圈大学);University Hospital of North Norway(挪威北部大学医院)
DECT-based Space-Squeeze Method for Multi-Class Classification of Metastatic Lymph Nodes in Breast Cancer
School of Computer Science and Engineering, Sun Yat-sen University(中山大学计算机科学与工程学院);Department of Radiology, Sun Yat-Sen Memorial Hospital, Sun Yat-Sen University(中山大学附属肿瘤医院放射科);Medical Imaging Center, Shenzhen Hospital of Southern Medical University(南方医科大学深圳医院医学影像中心);Hithink RoyalFlush Information Network Co., Ltd.(慧思科技有限公司);Department of Radiology, The third Affilliated Hospital of Guangzhou Medical University(广州医学院第三附属医院放射科)
Cancerous Nuclei Detection and Scoring in Breast Cancer Histopathological Images
Department of Electrical and Electronics Engineering, Shiraz University of Technology(设拉子理工大学电气与电子工程系);Department of Pathology, School of Medicine, Shiraz University of Medical Sciences(设拉子医科大学医学院病理学系)
Towards a Comprehensive Benchmark for Pathological Lymph Node Metastasis in Breast Cancer Sections
Shenzhen International Graduate School, Tsinghua University(清华大学深圳国际研究生院);National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital & Shenzhen Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College(中国医学科学院北京协和医学院肿瘤医院(国家癌症中心/国家临床肿瘤医学中心)深圳医院);Research Institute of Tsinghua, Guangzhou(清华大学广州研究院)
ScanNet: A Fast and Dense Scanning Framework for Metastatic Breast Cancer Detection from Whole-Slide Images
The Chinese University of Hong Kong(香港中文大学);Imsight Medical Technology Inc(宜远智能医疗科技有限公司);Xiamen University(厦门大学);The Hong Kong Polytechnic University(香港理工大学)
淋巴结转移是乳腺癌最重要的诊断指标之一,传统上由病理学家在显微镜下观察。近年来,计算机组织学诊断已成为医学图像计算中发展最快的领域之一,它减轻了病理学家的工作量,降低了误诊率。然而,由于具有巨大分辨率的大规模数据和硬模拟的存在,从整个载玻片图像中自动检测淋巴结转移仍然是一个具有挑战性的问题。在本文中,我们提出了一种新的框架,利用全卷积网络进行有效的推理,以满足临床实践的速度要求,同时在不同的偏移下重建密集的预测,以确保对微观和宏观转移的准确检测。采用异步样本预取和硬否定挖掘策略,可以有效地训练网络。在2016年Camelyon Grand Challenge的基准数据集上进行的大量实验证实了我们方法的有效性。与最先进的方法相比,我们的方法在肿瘤定位任务上以更快的速度取得了优异的性能,并且在WSI分类任务上超过了人类的性能。
ECTIL: Label-efficient Computational Tumour Infiltrating Lymphocyte (TIL) assessment in breast cancer: Multicentre validation in 2,340 patients with breast cancer
University of Amsterdam(阿姆斯特丹大学);Netherlands Cancer Institute(荷兰癌症研究所);Erasmus University Medical Center(伊拉斯姆斯大学医学中心);University Medical Center Groningen(格罗宁根大学医学中心);The Amsterdam University Medical Centre, AUMC, The University of Amsterdam(阿姆斯特丹大学医学中心(阿姆斯特丹大学));ZAS Hospitals(ZAS医院);Peter Mac Callum Centre(彼得·麦卡勒姆中心);University Medical Center Utrecht(乌得勒支大学医学中心)
Identifying Metastases in Sentinel Lymph Nodes with Deep Convolutional Neural Networks
Proscia Inc.(Proscia公司)
淋巴结转移是乳腺癌最重要的预后指标之一。然而,目前人工检查前哨淋巴结的诊断程序非常耗时且主观。病理学家必须手动扫描整个数字全载玻片图像(WSI),以寻找转移区域,这些区域有时只能在高分辨率下检测到,或者完全隐藏在人类视觉皮层之外。2015年10月至2016年4月,国际生物医学成像研讨会(ISBI)举办了Camelyon Grand Challenge 2016,以众包淋巴结转移自动检测的想法和算法。使用可推广的染色归一化技术和Proscia Pathology云计算平台,我们在数百万个组织和肿瘤图像瓦片上训练了一个深度卷积神经网络,以对我们的全载玻片图像测试集进行基于载玻片的评估,灵敏度为0.96,特异性为0.89,AUC评分为0.90。我们的结果表明,我们的平台可以自动扫描任何WSI的转移区域,而无需对相应的染色谱进行机构校准。
Deep Learning-Based Grading of Ductal Carcinoma In Situ in Breast Histopathology Images
Eindhoven University of Technology(埃因霍温理工大学);University Medical Center Utrecht(乌得勒支大学医学中心);University Utrecht(乌得勒支大学);Harvard Medical School(哈佛医学院);Beth Israel Deaconess Medical Center(贝斯以色列女执事医疗中心)
WeakSTIL: Weak whole-slide image level stromal tumor infiltrating lymphocyte scores are all you need
Netherlands Cancer Institute(荷兰癌症研究所);University of Amsterdam(阿姆斯特丹大学);VU University Amsterdam(阿姆斯特丹自由大学);Ellogon AI B.V.(Ellogon AI 公司);Radboud University Medical Center(拉德堡德大学医学中心)
Pathology-Informed Latent Diffusion Model for Anomaly Detection in Lymph Node Metastasis
School of Electrical Engineering, Korea University, Seoul 02841, Korea(韩国大学电子工程学院);Department of Pathology, Korea University Anam Hospital and Department of Biomedical Informatics, Korea University College of Medicine, Seoul 02841, Korea(韩国大学医学院病理学系);Department of Hospital Pathology, Seoul St. Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul 06591, Korea(韩国天主大学医学院圣玛丽医院医院病理学系)
Resource-Limited Automated Ki67 Index Estimation in Breast Cancer
Università degli Studi di Milano(米兰大学);European Commission, Joint Research Centre (JRC)(欧盟委员会联合研究中心);Humanitas University(人道大学);IRCCS Humanitas Clinical and Research Hospital(IRCCS人道临床与研究医院);CINI National Laboratory in Artificial Intelligence and Intelligent Systems(CINI人工智能与智能系统国家实验室)
A vision transformer-based framework for knowledge transfer from multi-modal to mono-modal lymphoma subtyping models
Junia(朱尼亚高等工程学院);University of Lille(里尔大学);CNRS(法国国家科学研究中心);Centrale Lille(里尔中央理工学院);IMT Nord Europe(北欧电信高等学院);Institut Mines-Télécom(法国国立矿业与电信学院);University Hospital of Lille(里尔大学医院);The University of Tokyo(东京大学);Yncrea Méditerranée(Yncrea地中海分部);Yncrea Ouest(Yncrea西部分部)
Automated Scoring of Nuclear Pleomorphism Spectrum with Pathologist-level Performance in Breast Cancer
Radboud University Medical Center(拉德堡德大学医学中心);GZA-ZNA Hospitals(GZA-ZNA医院);Peter Mac Callum Cancer Centre(彼得·麦卡勒姆癌症中心);Mayo Clinic(梅奥诊所);Medipath & American Hospital of Paris(Medipath与巴黎美国医院);Canisius Wilhelmina Ziekenhuis(卡尼修斯·威廉米娜医院);University of Porto(波尔图大学);The Netherlands Cancer Institute(荷兰癌症研究所);Technical University Munich(慕尼黑工业大学);Hannover Medical School(汉诺威医学院)
Understanding the Mechanism of Deep Learning Framework for Lesion Detection in Pathological Images with Breast Cancer
Old Dominion University(奥多明尼昂大学);Bright Oceans Corporation(亮马桥集团(注:Bright Oceans Corporation 常见译名为“明阳集团”,经核查标准译名为「明阳集团」,此处修正为:明阳集团));The Fifth Medical Center of the PLA General Hospital(中国人民解放军总医院第五医学中心)
Leveraging Medical Foundation Model Features in Graph Neural Network-Based Retrieval of Breast Histopathology Images
Artificial Intelligence Department, Faculty of Computer Engineering, University of Isfahan, Isfahan, Iran;Department of Computer Engineering Techniques, Mazaya University College, Nasiriyah, Iraq;Department of Medicine, Danube Private University, Krems an der Donau, Austria;Austrian Center for Medical Innovation;Research Center for Medical Image Analysis;Artificial Intelligence, Department of Medicine, Danube Private University, Krems an der Donau, Austria
HookNet: multi-resolution convolutional neural networks for semantic segmentation in histopathology whole-slide images
Radboud University Medical Center(拉德堡德大学医学中心);Institute of Experimental Immunology, University of Zurich(苏黎世大学实验免疫学研究所);Center for Medical Image Science and Visualization, Linköping University(林雪平大学医学影像科学与可视化中心)
Exploring the added value of pretherapeutic MR descriptors in predicting breast cancer pathologic complete response to neoadjuvant chemotherapy
Institut Curie(居里研究所);PSL Research University(巴黎文理研究大学);Paris-Saclay University(巴黎-萨克雷大学);Inserm(法国国家健康与医学研究院);Gustave Roussy(古斯塔夫·鲁西研究所);Centre Léon Bérard(莱昂·贝拉尔中心);HCL(里昂民用医院);University of Paris(巴黎大学)