Understanding the transport of driven nano- and micro-particles in complex fluids is of relevance for many biological and technological applications. Here we perform hydrodynamic multiparticle collision dynamics simulations of spherical and elongated particles driven through polymeric fluids containing different concentrations of polymers. We determine the mean particle velocities which are larger than expected from Stokes law for all particle shapes and polymer densities. Furthermore we measure the fluid flow fields and local polymer density and polymer conformation around the particles. We find that polymer-depleted regions close to the particles are responsible for an apparent tangential slip velocity which accounts for the measured flow fields and transport velocities. A simple two-layer fluid model gives a good match to the simulation results.
Understanding the hydrodynamic alignment of colloidal rods in polymer solutions is pivotal for manufacturing structurally ordered materials. How polymer crowding influences the flow-induced alignment of suspended colloidal rods remains unclear when rods and polymers share similar length-scales. We tackle this problem by analyzing the alignment of colloidal rods suspended in crowded polymer solutions, and comparing against the case where crowding is provided by additional colloidal rods in a pure solvent. We find that the polymer dynamics govern the onset of shear-induced alignment of colloidal…
We suggest a geometrical mechanism for the ordering of slender filaments inside non-isotropic containers, using cortical microtubules in plant cells and packing of viral genetic material inside capsids as concrete examples. We show analytically how the shape of the cell affects the ordering of phantom, non-self-avoiding, stiff rods. We find that for oblate cells the preferred orientation is along the equator, while for prolate spheroids with an aspect ratio close to one, the orientation is along the principal (long axis). Surprisingly, at high enough aspect ratio, a configurational phase trans…
We consider the dynamics of a translocation process of a flexible linear polymer through a nanopore into an environment of active rods in the {\it trans} side. Using Langevin dynamics simulations we find that the rods facilitate translocation to the {\it trans} side even when there are initially more monomers on the {\it cis} than on the {\it trans} side. Structural analysis of the translocating polymer reveals that active rods induce a folded structure to the {\it trans}-side subchain in the case of successful translocation events. By keeping the initial number of monomers on the {\it cis}-si…
We use a combination of computer simulations and iso-flux tension propagation (IFTP) theory to investigate translocation dynamics of a flexible linear polymer through a nanopore into an environment composed of repulsive active rods in 2D. We demonstrate that the rod activity induces a crowding effect on the polymer, leading to a time-dependent net force that facilitates translocation into the active environment. Incorporating this force into the IFTP theory for pore-driven translocation allows us to characterise translocation dynamics in detail and derive a scaling form for the average translo…
Rod-shaped colloids with attractive tips can form linear aggregates that may subsequently undergo hierarchical self-assembly into nematic fluids. Inspired by recent modelling efforts on chromonic liquid crystals, composed of discotic building blocks, we formulate a second-virial theory for reversible supramolecular rods. Unlike chromonics, these systems are capable of forming stable nematic phases in the high-temperature, monomeric limit in the absence of polymerization. Changing the tip potential from attractive to repulsive thus enables a smooth crossover from a monomeric to a polymeric nema…
As a stiff polymer tumbles in shear flow, it experiences compressive viscous forces that can cause it to buckle and undergo a sequence of morphological transitions with increasing flow strength. We use numerical simulations to uncover the effects of these transitions on the steady shear rheology of a dilute suspension of stiff polymers. Our results agree with classic scalings for Brownian rods in relatively weak flows but depart from them above the buckling threshold. Signatures of elastoviscous buckling include enhanced shear thinning and an increase in the magnitude of normal stress differen…
The propagation of chirality across scales is a common but poorly understood phenomenon in soft matter. In this work, we use computer simulations to study chiral monolayer assemblies formed by hard rod-like colloidal particles in the presence of non-adsorbing polymer and characterize the thermodynamic driving forces responsible for the twisting. Simulations show that straight (achiral) rods assemble into monolayers with a spontaneous twist that is either left- or right-handed, while helical (chiral) rods lead to assemblies with preferential chiral features that depend on their handedness and c…
In the presence of a non-adsorbing polymer, monodisperse rod-like colloids assemble into one-rod-length thick liquid-like monolayers, called colloidal membranes. The density of the rods within a colloidal membrane is determined by a balance between the osmotic pressure exerted by the enveloping polymer suspension and the repulsion between the colloidal rods. We developed a microfluidic device for continuously observing an isolated membrane while dynamically controlling the osmotic pressure of the polymer suspension. Using this technology we measured the membrane rod density over a range of osm…
The assembly of nanometer-sized building blocks into complex morphologies is not only of fundamental interest but also plays a key role in material science and nanotechnology. We show that the shape of self-assembled superstructures formed by rod-like viruses can be controlled by tuning the attraction via the depletion interaction between the rods. Using nonadsorbing polymers as a depleting agent, we demonstrate that a hierarchical unidimensional self-organization into crystalline clusters emerges progressively upon increasing depletion attraction -and enhanced growth kinetics. We observe a po…
Spherically-symmetric atom-centered descriptors of atomic environments have been widely used for constructing potential or free energy surfaces of atomistic and colloidal systems and to characterize local structures using machine learning techniques. However, when particle shapes are non-spherical, as in the case of rods and ellipsoids, standard spherically-symmetric structure functions alone produce imprecise descriptions of local environments. In order to account for the effects of orientation, we introduce two- and three-body orientation-dependent particle-centered descriptors for systems c…
Polymer Membrane Tensegrity: Inverse Design of Polymer Films Morphing into Freeform 3D Surfaces with Digital Photopatterning Technique
Biomatter Lab（生物物质实验室）；Graduate School of Arts and Sciences, The University of Tokyo（东京大学大学院人文社会系研究科）；School of Science and Technology, Meiji University（明治大学理工学部）；Department of Chemical Science and Engineering, School of Materials and Chemical Technology, Institute of Science Tokyo（东京科学大学材料化学技术学部化学科学与工程系）
The properties of polymer composites with nanofiller particles change drastically above a critical filler density known as the percolation threshold. Real nanofillers, such as graphene flakes and cellulose nanocrystals, are not idealized disks and rods but are often modeled as such. Here we investigate the effect of the shape of the particle cross section on the geometric percolation threshold. Using connectedness percolation theory and the second-virial approximation, we analytically calculate the percolation threshold of hard convex particles in terms of three single-particle measures. We ap…
A density functional of fundamental measure type for a lattice model of anisotropic particles with hard-core repulsions and effective attractions is derived in the spirit of the Asakura-Oosawa model. Through polymeric lattice particles of various size and shape, effective attractions of different strength and range between the colloids can be generated. The functional is applied to the determination of phase diagrams for sticky rods of length $L$ in two dimensions, in three dimensions and in a monolayer system on a neutral substrate. In all cases, there is a competition between ordering and ga…
The classical Oseen-Frank theory of liquid crystal elasticity is based on the experimentally verified fact that there are three independent modes of distortion, each with its associated elastic constant. On the other hand, the arguably more first-principles order parameter-based Landau-de Gennes theory only involves two independent elastic modes. The resulting 'elastic constants problem' has led to a considerable amount of vexation among theorists. In a series of papers at the turn of the century, Fukuda and Yokoyama suggested that the resolution of this problem could be found in the proper tr…
Nanofiller particles, such as carbon nanotubes or metal wires, are used in functional polymer composites to make them conduct electricity. They are often not perfectly straight cylinders, but may be tortuous or exhibit kinks. Therefore we investigate the effect of shape deformations of the rodlike nanofillers on the geometric percolation threshold of the dispersion. We do this by using connectedness percolation theory within a Parsons-Lee type of approximation, in combination with Monte Carlo integration for the average overlap volume in the isotropic fluid phase. We find that a deviation from…
Detailed control over the motion of colloidal particles is relevant in many applications in colloidal science such as lab-on-a-chip devices. Here, we use an external magnetic field to assemble paramagnetic colloidal spheres into colloidal rods of several lengths. The rods reside above a square magnetic pattern and are transported via modulation of the direction of the external magnetic field. The rods behave like bipeds walking above the pattern. Depending on their length, the bipeds perform topologically distinct classes of protected walks above the pattern. We demonstrate that it is possible…
A reasonably accurate representation of a polymer chain is provided by beads connected with rods, or stiff, inextensible springs that mimic a single Kuhn step. Due to high computational cost, coarse-grained bead-spring models are used in typical applications, where each spring is supposed to replace several Kuhn steps. Earlier investigations indicate that the BD simulation predictions of the steady state in different flows, with these different levels of discretization, are largely qualitatively similar. However, subtle quantitative differences exist even for the steady states. In this study, …
With suitably designed Monte Carlo simulations we have investigated the properties of mobile, impenetrable, yet deformable particles that are immersed into a porous matrix, the latter one realized via a frozen configuration of spherical particles. By virtue of a model put forward by Batista and Miller [Phys. Rev. Lett. {\bf 105}, 088305 (2010)] the fluid particles can change under the impact of their surrounding (i.e., either other fluid particles or the matrix) their shape within the class of ellipsoids of revolution; such a change in shape is related to an energy change which is fed into sui…
Ferrogels, i.e., hydrogels loaded with magnetic nanoparticles, have the ability to deform in external magnetic fields. The precise shape of deformation and the alignment of the gel in the field, however, depend on the interplay of several factors. In this paper, we introduce a coarse-grained simulation model, which takes into account the configuration of magnetic particles in the gel, the sample shape, and aspects of the polymer network topology. We use this model to show that in gels with an isotropic microstructure, an external magnetic field reduces clustering, while this is not the case fo…
Application of Machine Learning for the Identification of 2D Colloidal Assemblies: A Case Study on Particles of Distinct Shapes
Astrakhan Tatishchev State University（阿斯特拉罕塔季谢夫国立大学）；Caspian Institute of Maritime and River Transport named after Admiral General F.M. Apraksin – the affiliation of “Volga State University of Water Transport”（以海军上将F.M.阿普拉克辛命名的里海海事和河运学院——伏尔加水运大学下属机构）
