Mean Field Network based Graph Refinement with application to Airway Tree Extraction
University of Copenhagen（哥本哈根大学）；University of Amsterdam（阿姆斯特丹大学）；Canadian Institute for Advanced Research（加拿大高级研究所）；University Hospital of Copenhagen（哥本哈根大学医院）；Erasmus Medical Center（伊拉斯姆斯医学中心）
Raghavendra Selvan, Max Welling, Jesper H. Pedersen, Jens Petersen, Marleen de Bruijne
We present tree extraction in 3D images as a graph refinement task, of obtaining a subgraph from an over-complete input graph. To this end, we formulate an approximate Bayesian inference framework on undirected graphs using mean field approximation (MFA). Mean field networks are used for inference based on the interpretation that iterations of MFA can be seen as feed-forward operations in a neural network. This allows us to learn the model parameters from training data using back-propagation algorithm. We demonstrate usefulness of the model to extract airway trees from 3D chest CT data. We first obtain probability images using a voxel classifier that distinguishes airways from background and use Bayesian smoothing to model individual airway branches. This yields us joint Gaussian density estimates of position, orientation and scale as node features of the input graph. Performance of the method is compared with two methods: the first uses probability images from a trained voxel classifier with region growing, which is similar to one of the best performing methods at EXACT'09 airway challenge, and the second method is based on Bayesian smoothing on these probability images. Using centerline distance as error measure the presented method shows significant improvement compared to these two methods.
University of Copenhagen（哥本哈根大学）；University of Amsterdam（阿姆斯特丹大学）；CIFAR（加拿大高级研究院）；University Hospital of Copenhagen（哥本哈根大学医院）；Erasmus MC, Rotterdam（鹿特丹伊拉斯姆斯医学中心）
We present extraction of tree structures, such as airways, from image data as a graph refinement task. To this end, we propose a graph auto-encoder model that uses an encoder based on graph neural networks (GNNs) to learn embeddings from input node features and a decoder to predict connections between nodes. Performance of the GNN model is compared with mean-field networks in their ability to extract airways from 3D chest CT scans.
University of Copenhagen（哥本哈根大学）；Rigshospitalet, University Hospital of Copenhagen（哥本哈根大学医院）；Erasmus MC Rotterdam（鹿特丹伊拉斯姆斯大学医学中心）
Knowledge of airway tree morphology has important clinical applications in diagnosis of chronic obstructive pulmonary disease. We present an automatic tree extraction method based on multiple hypothesis tracking and template matching for this purpose and evaluate its performance on chest CT images. The method is adapted from a semi-automatic method devised for vessel segmentation. Idealized tubular templates are constructed that match airway probability obtained from a trained classifier and ranked based on their relative significance. Several such regularly spaced templates form the local hyp…
Accurate, automatic and complete extraction of pulmonary airway in medical images plays an important role in analyzing thoracic CT volumes such as lung cancer detection, chronic obstructive pulmonary disease (COPD), and bronchoscopic-assisted surgery navigation. However, this task remains challenges, due to the complex tree-like structure of the airways. In this technical report, we use two-stage fully convolutional networks (FCNs) to automatically segment pulmonary airway in thoracic CT scans from multi-sites. Specifically, we firstly adopt a 3D FCN with U-shape network architecture to segmen…
Airway Segmentation Network for Enhanced Tubular Feature Extraction
School of Optical-electrical and Computer Engineering（光学电子与计算机工程学院）；University of Shanghai for Science and Technology（上海理工大学）；School of Information Technology（信息技术学院）；Jiangsu Open University（江苏开放大学）
University College London（伦敦大学学院）；KU Leuven（鲁汶大学）；University Hospitals Leuven（鲁汶大学医院）；University of Antwerp（安特卫普大学）
Several chronic lung diseases, like idiopathic pulmonary fibrosis (IPF) are characterised by abnormal dilatation of the airways. Quantification of airway features on computed tomography (CT) can help characterise disease progression. Physics based airway measurement algorithms have been developed, but have met with limited success in part due to the sheer diversity of airway morphology seen in clinical practice. Supervised learning methods are also not feasible due to the high cost of obtaining precise airway annotations. We propose synthesising airways by style transfer using perceptual losse…
Northeastern University（东北大学）；Shenyang University of Technology（沈阳工业大学）；The Chinese University of Hong Kong（香港中文大学）；Second Affiliated Hospital of Dalian Medical University（大连医科大学附属第二医院）；Central Hospital Affiliated to Shenyang Medical College（沈阳医学院附属中心医院）
Accurate airway extraction from computed tomography (CT) images is a critical step for planning navigation bronchoscopy and quantitative assessment of airway-related chronic obstructive pulmonary disease (COPD). The existing methods are challenging to sufficiently segment the airway, especially the high-generation airway, with the constraint of the limited label and cannot meet the clinical use in COPD. We propose a novel two-stage 3D contextual transformer-based U-Net for airway segmentation using CT images. The method consists of two stages, performing initial and refined airway segmentation…
Shanghai Jiao Tong University（上海交通大学）；Imperial College London（帝国理工学院）
Airway segmentation on CT scans is critical for pulmonary disease diagnosis and endobronchial navigation. Manual extraction of airway requires strenuous efforts due to the complicated structure and various appearance of airway. For automatic airway extraction, convolutional neural networks (CNNs) based methods have recently become the state-of-the-art approach. However, there still remains a challenge for CNNs to perceive the tree-like pattern and comprehend the connectivity of airway. To address this, we propose a voxel-connectivity aware approach named AirwayNet for accurate airway segmentat…
University of Copenhagen（哥本哈根大学）；Rigshospitalet, University Hospital of Copenhagen（哥本哈根大学医院）；Erasmus MC（伊拉斯谟医学中心）
Segmenting tree structures is common in several image processing applications. In medical image analysis, reliable segmentations of airways, vessels, neurons and other tree structures can enable important clinical applications. We present a framework for tracking tree structures comprising of elongated branches using probabilistic state-space models and Bayesian smoothing. Unlike most existing methods that proceed with sequential tracking of branches, we present an exploratory method, that is less sensitive to local anomalies in the data due to acquisition noise and/or interfering structures. …
National Heart and Lung Institute, Imperial College London（帝国理工学院国家心肺研究所）；Imperial College London（帝国理工学院）；Royal Brompton Hospital（皇家布朗普顿医院）
Discontinuity in the delineation of peripheral bronchioles hinders the potential clinical application of automated airway segmentation models. Moreover, the deployment of such models is limited by the data heterogeneity across different centres, and pathological abnormalities also make achieving accurate robust segmentation in distal small airways difficult. Meanwhile, the diagnosis and prognosis of lung diseases often rely on evaluating structural changes in those anatomical regions. To address this gap, this paper presents a patch-scale adversarial-based refinement network that takes in prel…
University of Amsterdam（阿姆斯特丹大学）；Canadian Institute of Advanced Research（加拿大高等研究院）；Erasmus MC（伊拉斯姆斯医学中心）；Rigshospitalet（哥本哈根大学医院）；University of Copenhagen（哥本哈根大学）
Graph refinement, or the task of obtaining subgraphs of interest from over-complete graphs, can have many varied applications. In this work, we extract trees or collection of sub-trees from image data by, first deriving a graph-based representation of the volumetric data and then, posing the tree extraction as a graph refinement task. We present two methods to perform graph refinement. First, we use mean-field approximation (MFA) to approximate the posterior density over the subgraphs from which the optimal subgraph of interest can be estimated. Mean field networks (MFNs) are used for inferenc…
Sichuan University - Pittsburgh Institute（四川大学-匹兹堡学院）
Airway segmentation from chest computed tomography scans has played an essential role in the pulmonary disease diagnosis. The computer-assisted airway segmentation based on the U-net architecture is more efficient and accurate compared to the manual segmentation. In this paper we employ the U$^2$-net trained by the Dice loss function to model the airway tree from the multi-site CT scans based on 299 training CT scans provided by the ATM'22. The derived saliency probability map from the training is applied to the validation data to extract the corresponding airway trees. The observation shows t…
RepAir: A Framework for Airway Segmentation and Discontinuity Correction in CT
University of Michigan（密歇根大学）；D Medical, Inc.（4D医疗公司）；University of Massachusetts（马萨诸塞大学）；Emory University（埃默里大学）；Georgia Institute of Technology（佐治亚理工学院）
Deep convolutional neural networks for image segmentation do not learn the label structure explicitly and may produce segmentations with an incorrect structure, e.g., with disconnected cylindrical structures in the segmentation of tree-like structures such as airways or blood vessels. In this paper, we propose a novel label refinement method to correct such errors from an initial segmentation, implicitly incorporating information about label structure. This method features two novel parts: 1) a model that generates synthetic structural errors, and 2) a label appearance simulation network that …
Beihang University（北京航空航天大学）；Hangzhou Innovation Institute, Beihang University（北京航空航天大学杭州创新研究院）
Extracting building footprints from remote sensing images has been attracting extensive attention recently. Dominant approaches address this challenging problem by generating vectorized building masks with cumbersome refinement stages, which limits the application of such methods. In this paper, we introduce a new refinement-free and end-to-end building footprint extraction method, which is conceptually intuitive, simple, and effective. Our method, termed as BiSVP, represents a building instance with ordered vertices and formulates the building footprint extraction as predicting the serialized…
Temporally Consistent Graph Extraction and Matching for Longitudinal Angiographic Images
Technical University of Munich (TUM)（慕尼黑工业大学）；TUM University Hospital（慕尼黑工业大学附属医院）；Munich Center for Machine Learning (MCML)（慕尼黑机器学习中心）；Imperial College London（伦敦帝国理工学院）
German Research Center for Artificial Intelligence（德国人工智能研究中心）；University of Kaiserslautern（凯泽斯劳滕大学）
The ability to create an accurate three-dimensional reconstruction of a captured scene draws attention to the principles of light fields. This paper presents an approach for light field camera calibration and rectification, based on pairwise pattern-based parameters extraction. It is followed by a correspondence-based algorithm for camera parameters refinement from arbitrary scenes using the triangulation filter and nonlinear optimization. The effectiveness of our approach is validated on both real and synthetic data.
We propose a new gradient-based method for the extraction of the orientation field associated to a fingerprint, and a regularisation procedure to improve the orientation field computed from noisy fingerprint images. The regularisation algorithm is based on three new integral operators, introduced and discussed in this paper. A pre-processing technique is also proposed to achieve better performances of the algorithm. The results of a numerical experiment are reported to give an evidence of the efficiency of the proposed algorithm.
After an artificial model background subtraction, the pixels have been labelled as foreground and background. Previous approaches to secondary processing the output for denoising usually use traditional methods such as the Bayesian refinement method. In this paper, we focus on using a modified U-Net model to approximate the result of the Bayesian refinement method and improve the result. In our modified U-Net model, the result of background subtraction from other models will be combined with the source image as input for learning the statistical distribution. Thus, the losing information cause…
Indian Institute of Technology Madras（印度理工学院马德拉斯分校）
Representation learning from 3D point clouds is challenging due to their inherent nature of permutation invariance and irregular distribution in space. Existing deep learning methods follow a hierarchical feature extraction paradigm in which high-level abstract features are derived from low-level features. However, they fail to exploit different granularity of information due to the limited interaction between these features. To this end, we propose Multi-Abstraction Refinement Network (MARNet) that ensures an effective exchange of information between multi-level features to gain local and glo…
Carnegie Mellon University（卡内基梅隆大学）；Tokyo Institute of Technology（东京工业大学）
We present RePOSE, a fast iterative refinement method for 6D object pose estimation. Prior methods perform refinement by feeding zoomed-in input and rendered RGB images into a CNN and directly regressing an update of a refined pose. Their runtime is slow due to the computational cost of CNN, which is especially prominent in multiple-object pose refinement. To overcome this problem, RePOSE leverages image rendering for fast feature extraction using a 3D model with a learnable texture. We call this deep texture rendering, which uses a shallow multi-layer perceptron to directly regress a view-inv…
DAMO Academy, Alibaba Group（阿里巴巴集团达摩院）；Institute of Remote Sensing and Geographic Information Systems, School of Earth and Space Sciences, Peking University（北京大学地球与空间科学学院遥感与地理信息系统研究所）
We present PolyBuilding, a fully end-to-end polygon Transformer for building extraction. PolyBuilding direct predicts vector representation of buildings from remote sensing images. It builds upon an encoder-decoder transformer architecture and simultaneously outputs building bounding boxes and polygons. Given a set of polygon queries, the model learns the relations among them and encodes context information from the image to predict the final set of building polygons with fixed vertex numbers. Corner classification is performed to distinguish the building corners from the sampled points, which…
Point cloud upsampling focuses on generating a dense, uniform and proximity-to-surface point set. Most previous approaches accomplish these objectives by carefully designing a single-stage network, which makes it still challenging to generate a high-fidelity point distribution. Instead, upsampling point cloud in a coarse-to-fine manner is a decent solution. However, existing coarse-to-fine upsampling methods require extra training strategies, which are complicated and time-consuming during the training. In this paper, we propose a simple yet effective cascaded refinement network, consisting of…
Modeling sparse and dense image matching within a unified functional correspondence model has recently attracted increasing research interest. However, existing efforts mainly focus on improving matching accuracy while ignoring its efficiency, which is crucial for realworld applications. In this paper, we propose an efficient structure named Efficient Correspondence Transformer (ECO-TR) by finding correspondences in a coarse-to-fine manner, which significantly improves the efficiency of functional correspondence model. To achieve this, multiple transformer blocks are stage-wisely connected to …
Point-aware Interaction and CNN-induced Refinement Network for RGB-D Salient Object Detection
Beijing Jiaotong University（北京交通大学）；Shandong University（山东大学）；Institute of Information Science, Beijing Jiaotong University（北京交通大学信息科学研究所）；Southern University of Science and Technology（南方科技大学）；City University of Hong Kong（香港城市大学）
We propose a novel framework to conduct field extraction from forms with unlabeled data. To bootstrap the training process, we develop a rule-based method for mining noisy pseudo-labels from unlabeled forms. Using the supervisory signal from the pseudo-labels, we extract a discriminative token representation from a transformer-based model by modeling the interaction between text in the form. To prevent the model from overfitting to label noise, we introduce a refinement module based on a progressive pseudo-label ensemble. Experimental results demonstrate the effectiveness of our framework.
School of Computer Science, Fudan University（复旦大学计算机学院）；Systems and Shanghai Key Laboratory of Data Science, Fudan University（复旦大学系统与上海数据科学重点实验室）；Shanghai Insitute of Intelligent Electroics & Systems（上海智能电子与系统研究所）；Bytedance AI Lab（字节跳动AI实验室）；Singapore Management University（新加坡管理大学）
Automatic map extraction is of great importance to urban computing and location-based services. Aerial image and GPS trajectory data refer to two different data sources that could be leveraged to generate the map, although they carry different types of information. Most previous works on data fusion between aerial images and data from auxiliary sensors do not fully utilize the information of both modalities and hence suffer from the issue of information loss. We propose a deep convolutional neural network called DeepDualMapper which fuses the aerial image and trajectory data in a more seamless…
Semantic-Spatial Feature Fusion with Dynamic Graph Refinement for Remote Sensing Image Captioning
School of Computer Science and Technology, Wuhan University of Science and Technology（武汉科技大学计算机科学与技术学院）；School of Information Science and Engineering, Wuhan University of Science and Technology（武汉科技大学信息科学与工程学院）
Assisted Refinement Network Based on Channel Information Interaction for Camouflaged and Salient Object Detection
Department of Physics, J.K. Institute of Science（物理系，J.K.科学研究院）；World Scientific University（世界科学大学）；University of Intelligent Studies（智能研究大学）；School of Computer Science and Technology, Xinjiang University（计算机科学与技术学院，新疆大学）；Department of Electronic Engineering, Tsinghua University（电子工程系，清华大学）
Baidu Inc.（百度公司）；Institute of Automation, Chinese Academy of Sciences (CASIA)（中国科学院自动化研究所）
Inpainting arbitrary missing regions is challenging because learning valid features for various masked regions is nontrivial. Though U-shaped encoder-decoder frameworks have been witnessed to be successful, most of them share a common drawback of mask unawareness in feature extraction because all convolution windows (or regions), including those with various shapes of missing pixels, are treated equally and filtered with fixed learned kernels. To this end, we propose our novel mask-aware inpainting solution. Firstly, a Mask-Aware Dynamic Filtering (MADF) module is designed to effectively learn…
Multi-Granularity Mutual Refinement Network for Zero-Shot Learning
School of Computer Science and Technology, Xidian University（电子科技大学计算机科学与技术学院）；Donghai Laboratory（东海实验室）；Edith Cowan University（埃迪斯·科文大学）；University of Western Australia（西澳大学）
The binary segmentation of roads in very high resolution (VHR) remote sensing images (RSIs) has always been a challenging task due to factors such as occlusions (caused by shadows, trees, buildings, etc.) and the intra-class variances of road surfaces. The wide use of convolutional neural networks (CNNs) has greatly improved the segmentation accuracy and made the task end-to-end trainable. However, there are still margins to improve in terms of the completeness and connectivity of the results. In this paper, we consider the specific context of road extraction and present a direction-aware resi…
Ubisoft（育碧）；The European Institute for Molecular Imaging（欧洲分子影像研究所）
Recent advances in 3D imaging technologies provide novel insights to researchers and reveal finer and more detail of examined specimen, especially in the biomedical domain, but also impose huge challenges regarding scalability for automated analysis algorithms due to rapidly increasing dataset sizes. In particular, existing research towards automated vessel network analysis does not consider memory requirements of proposed algorithms and often generates a large number of spurious branches for structures consisting of many voxels. Additionally, very often these algorithms have further restricti…
Sun Yat-Sen University（中山大学）；The Guangdong University of Technology（广东工业大学）
Land remote sensing analysis is a crucial research in earth science. In this work, we focus on a challenging task of land analysis, i.e., automatic extraction of traffic roads from remote sensing data, which has widespread applications in urban development and expansion estimation. Nevertheless, conventional methods either only utilized the limited information of aerial images, or simply fused multimodal information (e.g., vehicle trajectories), thus cannot well recognize unconstrained roads. To facilitate this problem, we introduce a novel neural network framework termed Cross-Modal Message P…
Interleaved Block-based Learned Image Compression with Feature Enhancement and Quantization Error Compensation
School of software, Shandong University（山东大学软件学院）；School of Control Science and Engineering, Shandong University（山东大学控制科学与工程学院）；School of Engineering and Sustainable Development, De Montfort University（德蒙福特大学工程与可持续发展学院）；College of Computer Science and Software Engineering, Shenzhen University（深圳大学计算机与软件学院）；School of Telecommunications Engineering, Xidian University（西安电子科技大学通信工程学院）
Northwestern Polytechnical University（西北工业大学）；Guangxi University for Nationalities（广西民族大学）；Shenzhen Delica Medical Equipement Company Limited（深圳德力凯医疗设备有限公司）；Hospital of Northwestern Polytechnical University（西北工业大学医院）
Ultrasound imaging plays an important role in the diagnosis of vascular lesions. Accurate segmentation of the vascular wall is important for the prevention, diagnosis and treatment of vascular diseases. However, existing methods have inaccurate localization of the vascular wall boundary. Segmentation errors occur in discontinuous vascular wall boundaries and dark boundaries. To overcome these problems, we propose a new boundary-delineation network (BDNet). We use the boundary refinement module to re-delineate the boundary of the vascular wall to obtain the correct boundary location. We designe…
Automatically labeling intracranial arteries (ICA) with their anatomical names is beneficial for feature extraction and detailed analysis of intracranial vascular structures. There are significant variations in the ICA due to natural and pathological causes, making it challenging for automated labeling. However, the existing public dataset for evaluation of anatomical labeling is limited. We construct a comprehensive dataset with 729 Magnetic Resonance Angiography scans and propose a Graph Neural Network (GNN) method to label arteries by classifying types of nodes and edges in an attributed re…
We introduce a multimodal visual-textual search refinement method for fashion garments. Existing search engines do not enable intuitive, interactive, refinement of retrieved results based on the properties of a particular product. We propose a method to retrieve similar items, based on a query item image and textual refinement properties. We believe this method can be leveraged to solve many real-life customer scenarios, in which a similar item in a different color, pattern, length or style is desired. We employ a joint embedding training scheme in which product images and their catalog textua…
Image-of-Thought Prompting for Visual Reasoning Refinement in Multimodal Large Language Models
School of Engineering, Westlake University（西湖大学工程学院）；City University of Hong Kong（香港城市大学）；Research Center for Industries of the Future, Westlake University（西湖大学未来产业研究中心）；Johns Hopkins University（约翰斯·霍普金斯大学）
