We carry out a series of local, vertically stratified shearing box simulations of protoplanetary disks that include ambipolar diffusion and a net vertical magnetic field. The ambipolar diffusion profiles we employ correspond to 30AU and 100AU in a minimum mass solar nebula (MMSN) disk model, which consists of a far-UV-ionized surface layer and low-ionization disk interior. These simulations serve as a follow up to Simon et al. (2013), in which we found that without a net vertical field, the turbulent stresses that result from the magnetorotational instability (MRI) are too weak to account for observed accretion rates. The simulations in this work show a very strong dependence of the accretion stresses on the strength of the background vertical field; as the field strength increases, the stress amplitude increases. For gas to magnetic pressure ratios of 1e4 and 1e5, we find accretion rates between 1e-8 and 1e-7 solar masses per year. These accretion rates agree with observational constraints, suggesting a vertical magnetic field strength between 60 and 200 microgauss at 30AU and 10 and 30 microgauss at 100AU in a MMSN disk. Furthermore, the stress has a non-negligible component due to a magnetic wind. For sufficiently strong vertical field strengths, MRI turbulence is quenched, and the flow becomes largely laminar, with accretion proceeding through large scale correlations in the radial and toroidal field components as well as through the magnetic wind. In all simulations, the presence of a low ionization region near the disk mid-plane, which we call the ambipolar damping zone, results in reduced stresses there.
We investigate a massive ($\varSigma \sim 10000 g cm^{-2}$ at 1 AU) protoplanetary disc model by means of 3D radiation magnetohydrodynamics simulations. The vertical structure of the disc is determined self-consistently by a balance between turbulent heating caused by the MRI and radiative cooling. Concerning the vertical structure, two different regions can be distinguished: A gas-pressure dominated, optically thick midplane region where most of the dissipation takes place, and a magnetically dominated, optically thin corona which is dominated by strong shocks. At the location of the photosph…
We use local numerical simulations to investigate the strength and nature of magnetohydrodynamic (MHD) turbulence in the outer regions of protoplanetary disks, where ambipolar diffusion is the dominant non-ideal MHD effect. The simulations include vertical stratification and assume zero net vertical magnetic flux. We employ a super time-stepping technique to ameliorate the Courant restriction on the diffusive time step. We find that in idealized stratified simulations, with a spatially constant ambipolar Elsasser number Am, turbulence driven by the magnetorotational instability (MRI) behaves i…
Protoplanetary discs should exhibit a weak vertical variation in their rotation profiles. Typically this `vertical shear' issues from a baroclinic effect driven by the central star's radiation field, but it might also arise during the launching of a magnetocentrifugal wind. As a consequence, protoplanetary discs are subject to a hydrodynamical instability, the `vertical shear instability' (VSI), whose breakdown into turbulence could transport a moderate amount of angular momentum and facilitate, or interfere with, the process of planet formation. Magnetic fields may suppress the VSI, however, …
Excitation and propagation of waves in a thermally stratified disk with an arbitrary vertical temperature profile are studied. Previous analytical studies of three-dimensional waves had been focused on either isothermal or polytropic vertical disk structures. However, at the location in a protoplanetary disk where the dominant heating source is stellar irradiation, the temperature gradient may become positive in the vertical direction. We extend the analysis to study the effects of the vertical temperature structure on the waves that are excited at the Lindblad resonances. For a hotter disk at…
Turbulence driven by magnetorotational instability (MRI) crucially affects the evolution of solid bodies in protoplanetary disks. On the other hand, small dust particles stabilize MRI by capturing ionized gas particles needed for the coupling of the gas and magnetic fields. To provide an empirical basis for modeling the coevolution of dust and MRI, we perform three-dimensional, ohmic-resistive MHD simulations of a vertically stratified shearing box with an MRI-inactive "dead zone" of various sizes and with a net vertical magnetic flux of various strengths. We find that the vertical structure o…
We carry out a series of local, shearing box simulations of the outer regions of protoplanetary disks, where ambipolar diffusion is important due to low ionization levels, to better characterize the nature of turbulence and angular momentum transport in these disks. These simulations are divided into two groups, one with far ultraviolet (FUV) ionization included, and one without FUV. In both cases, we explore a large range in diffusivity values. We find that in the simulations without FUV, the properties of the turbulence are similar to the unstratified simulations of Bai & Stone (2011); for a…
Turbulence in protoplanetary disks plays an important role in dust evolution and planetesimal formation. The vertical shear instability (VSI) is one of the candidate hydrodynamic mechanisms that can generate turbulence in the outer disk regions. The VSI requires rapid gas cooling in addition to vertical shear. A linear stability analysis suggests that the VSI may not operate around the midplane where gas cooling is inefficient. In this study, we investigate the nonlinear outcome of the VSI in disks with a linearly VSI-stable midplane region. We perform two-dimensional global hydrodynamical sim…
The vertical shear instability (VSI) is a robust phenomenon in irradiated protoplanetary disks (PPDs). While there is extensive literature on the VSI in the hydrodynamic limit, PPDs are expected to be magnetized and their extremely low ionization fractions imply that non-ideal magneto-hydrodynamic (MHD) effects should be properly considered. To this end, we present linear analyses of the VSI in magnetized disks with Ohmic resistivity. We primarily consider toroidal magnetic fields, which are likely to dominate the field geometry in PPDs. We perform vertically global and radially local analyses…
We aim to directly trace the vertical location of the emitting surface of multiple molecular tracers in protoplanetary disks. Our sample of disks includes Elias 2-27, WaOph 6 and the sources targeted by the MAPS ALMA Large Program. The set of molecules studied include CO isotopologues in various transitions, HCN, CN, H2CO, HCO+, C2H and c-C3H2. The vertical emitting region is determined directly from the channel maps, implementing accurate masking of the channel emission to recover the vertical location of the emission surface even at large radial distances from the star and for low-SNR lines.…
Dust and gas in protoplanetary disks dissipate as central stars evolve. In order to estimate the dust dissipation timescales in the protoplanetary disks, we stacked the WISE 12, 22, and the AKARI 90 $μ$m survey images of known T Tauri stars and derived the average fluxes, well below the survey flux limit in the 90 $μ$m band. We classified 4,783 T Tauri stars into three age groups, which are young ($<$2 Myr), mid-age (2-6 Myr), and old ($>$6 Myr) groups, and stacked the WISE 12 and 22 and the AKARI 90 $μ$m images in each group. The photometry of the stacked image shows the flux decay timescales…
Gravitational instability (GI) controls the dynamics of young massive protoplanetary discs. Apart from facilitating gas accretion on to the central protostar, it must also impact on the process of planet formation: directly through fragmentation, and indirectly through the turbulent concentration of small solids. To understand the latter process, it is essential to determine the dust dynamics in such a turbulent flow. For that purpose, we conduct a series of 3D shearing box simulations of coupled gas and dust, including the gas's self-gravity and scanning a range of Stokes numbers, from 0.001 …
The expectation that aerodynamic drag will force the solids in a gas-rich protoplanetary disk to spiral in toward the host star on short timescales is one of the fundamental problems in planet formation theory. The nominal efficiency of this radial drift process is in conflict with observations, suggesting that an empirical calibration of solid transport mechanisms in a disk is highly desirable. However, the fact that both radial drift and grain growth produce a similar particle size segregation in a disk (such that larger particles are preferentially concentrated closer to the star) makes it …
The vertical shear instability (VSI) is a hydrodynamical instability that requires rapid gas cooling and has been suggested to operate in outer regions of protoplanetary disks. The VSI drives turbulence with strong vertical motions, which could regulate the dust growth and settling. However, dust growth and settling can regulate the VSI because dust depletion makes gas cooling inefficient in outer disk regions that are optically thin to their own thermal emission. In this study, we quantify this potentially stabilizing effects of dust evolution on the VSI based on the linear analysis. We const…
We study wakes and gap opening by low mass planets in gaseous protoplanetary disks threaded by net vertical magnetic fields which drive magnetohydrodynamical (MHD) turbulence through the magnetorotational instabilty (MRI), using three dimensional simulations in the unstratified local shearing box approximation. The wakes, which are excited by the planets, are damped by shocks similar to the wake damping in inviscid hydrodynamic (HD) disks. Angular momentum deposition by shock damping opens gaps in both MHD turbulent disks and inviscid HD disks even for low mass planets, in contradiction to the…
The crucial initial step in planet formation is the agglomeration of micron-sized dust into macroscopic aggregates. This phase is likely to happen very early during the protostellar disc formation, which is characterised by active gas dynamics. We present numerical simulations of protostellar/protoplanetary disc long-term evolution, which includes gas dynamics with self-gravity in the thin-disc limit, and bidisperse dust grain evolution due to coagulation, fragmentation, and drift through the gas. We show that the decrease of the grain size to the disc periphery leads to sharp outer edges in d…
We investigate the strength of axisymmetric local pressure maxima (zonal flows) in the outer regions of protoplanetary disks, where ambipolar diffusion reduces turbulent stresses driven by the magnetorotational instability. Using local numerical simulations we show that in the absence of net vertical magnetic fields, the strength of turbulence in the ambipolar dominated region of the disk is low and any zonal flows that are present are weak. For net fields strong enough to yield observed protostellar accretion rates, however, zonal flows with a density amplitude of 10-20% are formed. These str…
It has recently been established that the evolution of protoplanetary disks is primarily driven by magnetized disk winds, requiring large-scale magnetic flux threading the disks. The size of such disks is expected to shrink in time, as opposed to the conventional scenario of viscous expansion. We present the first global 2D non-ideal magnetohydrodynamic (MHD) simulations of protoplanetary disks that are truncated in the outer radius, aiming to understand the interaction of the disk with the interstellar environment, as well as global evolution of the disk and magnetic flux. We find that as the…
Turbulence has a profound impact on the evolution of gas and dust in protoplanetary disks (PPDs), from driving the collisions and the diffusion of dust grains, to the concentration of pebbles in giant vortices, thus, facilitating planetesimal formation. The Vertical Shear Instability (VSI) is a hydrodynamic mechanism, operating in PPDs if the local rate of thermal relaxation is high enough. Previous studies of the VSI have, however, relied on the assumption of constant cooling rates, or neglected the finite coupling time between the gas particles and the dust grains. Here, we present the resul…
We study particle trapping at the edge of a gap opened by a planet in a protoplanetary disk. In particular, we explore the effects of turbulence driven by the magnetorotational instability on particle trapping, using global three-dimensional magnetohydrodynamic (MHD) simulations including Lagrangian dust particles. We study disks either in the ideal MHD limit or dominated by ambipolar diffusion (AD) that plays an essential role at the outer regions of a protoplanetary disk. With ideal MHD, strong turbulence (the equivalent viscosity parameter $α\sim 10^{-2}$) in disks prevents vortex formation…
We aim at estimating the dust scale height of protoplanetary disks from millimeter continuum observations. First, we present a general expression of intensity of a ring in a protoplanetary disk, and show that we can constrain the dust scale height by the azimuthal intensity variation. Then, we apply the presented methodology to the two distinct rings at 68 au and at 100 au of the protoplanetary disk around HD 163296. We constrain the dust scale height by comparing the DSHARP high-resolution millimeter dust continuum image with radiative transfer simulations using RADMC-3D. We find that h_d/h_g…
Vertical shear instability in two-moment radiation-hydrodynamical simulations of irradiated protoplanetary disks II. Secondary instabilities and stability regions
The mechanism behind angular momentum transport in protoplanetary disks, and whether this transport is turbulent in nature, is a fundamental issue in planet formation studies. Recent ALMA observations have suggested that turbulent velocities in the outer regions of these disks are less than ~5-10% of the sound speed, contradicting theoretical predictions of turbulence driven by the magnetorotational instability (MRI). These observations have generally been interpreted to be consistent with a large-scale laminar magnetic wind driving accretion. Here, we carry out local, shearing box simulations…
The magnetorotational instability (MRI) drives vigorous turbulence in a region of protoplanetary disks where the ionization fraction is sufficiently high. It has recently been shown that the electric field induced by the MRI can heat up electrons and thereby affect the ionization balance in the gas. In particular, in a disk where abundant dust grains are present, the electron heating causes a reduction of the electron abundance, thereby preventing further growth of the MRI. By using the nonlinear Ohm's law that takes into account electron heating, we investigate where in protoplanetary disks t…
Our previous linear analysis presents a new instability driven by dust coagulation in protoplanetary disks. The coagulation instability has the potential to concentrate dust grains into rings and assist dust coagulation and planetesimal formation. In this series of papers, we perform numerical simulations and investigate nonlinear outcome of coagulation instability. In this paper (Paper I), we first conduct local simulations to demonstrate the existence of coagulation instability. Linear growth observed in the simulations is in good agreement with the previous linear analysis. We next conduct …
Context: Recent observations with the Atacama Large Millimeter Array (ALMA) have shown that the large dust aggregates observed at millimeter wavelengths settle to the midplane into a remarkably thin layer. Aims: We intend to find out if the geometric thinness of these layers is evidence against the vertical shear instability (VSI) operating in these disks. Methods: We performed hydrodynamic simulations of a protoplanetary disk with a locally isothermal equation of state, and let the VSI fully develop. We sprinkled dust particles and followed their motion as they got stirred up by the VSI. We d…
In recent years hydrodynamical (HD) models have become important to describe the gas kinematics in protoplanetary disks, especially in combination with models of photoevaporation and/or magnetic-driven winds. We focus on diagnosing the the vertical extent of the VSI at 203 cells per scale height and allude at what resolution per scale height we obtain convergence. Finally, we determine the regions where EUV, FUV and X-Rays are dominant in the disk. We perform global HD simulations using the PLUTO code. We adopt a global isothermal accretion disk setup, 2.5D (2 dimensions, 3 components) which c…
Theoretical models predict that the obscuration of stellar radiation by irregularities on the surface of a protoplanetary disk can cause self-generating waves traveling towards the star. However, this process is traditionally simulated using the 1+1D approach, the key approximations of which - vertical hydrostatic equilibrium of the disk and vertical diffusion of IR radiation - can distort the picture. This article presents a two-dimensional radiative hydrodynamic model of the evolution of an axially symmetric gas and dust disk. Within this model, but using simplified assumptions from 1+1D mod…
We perform 3D stratified shearing-box MHD simulations on the gas dynamics of protoplanetary disks threaded by net vertical magnetic field Bz. All three non-ideal MHD effects, Ohmic resistivity, the Hall effect and ambipolar diffusion are included in a self-consistent manner based on equilibrium chemistry. We focus on regions toward outer disk radii, from 5-60AU, where Ohmic resistivity tends to become negligible, ambipolar diffusion dominates over an extended region across disk height, and the Hall effect largely controls the dynamics near the disk midplane. We find that around R=5AU, the syst…
Our aim is to study the thermal and dynamical evolution of protoplanetary disks in global simulations, including the physics of radiation transfer and magneto-hydrodynamic (MHD) turbulence caused by the magneto-rotational instability. We develop a radiative transfer method based on the flux-limited diffusion approximation that includes frequency dependent irradiation by the central star. This hybrid scheme is implemented in the PLUTO code. The focus of our implementation is on the performance of the radiative transfer method. Using an optimized Jacobi preconditioned BiCGSTAB solver, the radiat…
We perform local, vertically stratified shearing-box MHD simulations of protoplanetary disks (PPDs) at a fiducial radius of 1 AU that take into account the effects of both Ohmic resistivity and ambipolar diffusion (AD). The magnetic diffusion coefficients are evaluated self-consistently from a look-up table based on equilibrium chemistry. We first show that the inclusion of AD dramatically changes the conventional picture of layered accretion. Without net vertical magnetic field, the system evolves into a toroidal field dominated configuration with extremely weak turbulence in the far-UV ioniz…
It has recently been shown that the inner region of protoplanetary disks (PPDs) is governed by wind-driven accretion, and the resulting accretion flow showing complex vertical profiles. Such complex flow structures are further enhanced due to the Hall effect, especially when the background magnetic field is aligned with disk rotation. We investigate how such flow structures impact global dust transport via Monte-Carlo simulations, focusing on two scenarios. In the first scenario, the toroidal magnetic field is maximized in the miplane, leading to accretion and decretion flows above and below. …
MHD turbulence plays a crucial role in the dust dynamics of protoplanetary discs. It affects planet formation, vertical settling and is one possible origin of the large scale axisymmetric structures, such as rings, recently imaged by ALMA and SPHERE. Among the variety of MHD processes, the magnetorotational instability (MRI) has raised particular interest since it provides a source of turbulence and potentially organizes the flow into radial structures. However, the weak ionization of discs prevents the MRI from being excited beyond 1 AU. The strong sedimentation of millimetre dust measured in…
We characterize magnetically driven accretion at radii between 1 au and 100 au in protoplanetary discs, using a series of local non-ideal magnetohydrodynamic (MHD) simulations. The simulations assume a Minimum Mass Solar Nebula (MMSN) disc that is threaded by a net vertical magnetic field of specified strength. Confirming previous results, we find that the Hall effect has only a modest impact on accretion at 30 au, and essentially none at 100 au. At 1-10 au the Hall effect introduces a pronounced bi-modality in the accretion process, with vertical magnetic fields aligned to the disc rotation s…
Resolved ALMA and VLA observations indicate the existence of two dust traps in the protoplanetary disc MWC 758. By means of 2D gas+dust hydrodynamical simulations post-processed with 3D dust radiative transfer calculations, we show that the spirals in scattered light, the eccentric, asymmetric ring and the crescent-shaped structure in the (sub)millimetre can all be caused by two giant planets: a 1.5-Jupiter mass planet at 35 au (inside the spirals) and a 5-Jupiter mass planet at 140 au (outside the spirals). The outer planet forms a dust-trapping vortex at the inner edge of its gap (at ~85 au)…
Context: Vertically hydrostatic protoplanetary disk models are based on the assumption that the main heating source, stellar irradiation, does not vary much with time. However, it is known that accreting young stars are variable sources of radiation. This is particularly evident for outbursting sources such as EX Lupi and FU Orionis stars. Aim: We investigate how such outbursts affect the vertical structure of the outer regions of the protoplanetary disk, in particular their appearance in scattered light at optical and near-infrared wavelengths. Methods: We employ the 3D FARGOCA radiation-hydr…
We present high-resolution $^{12}$CO and $^{13}$CO 2-1 ALMA observations, as well as optical and near-infrared spectroscopy, of the highly-inclined protoplanetary disk around SSTC2D J163131.2-242627. The spectral type we derive for the source is consistent with a $\rm 1.2 \, M_{\odot}$ star inferred from the ALMA observations. Despite its massive circumstellar disk, we find little to no evidence for ongoing accretion on the star. The CO maps reveal a disk that is unusually compact along the vertical direction, consistent with its appearance in scattered light images. The gas disk extends about…
We explore whether protoplanetary disks with self-shadowing from puffed up inner rims exhibit observable features in scattered light images. We use both self-consistent hydrostatic equilibrium calculations and parameterized models to produce the vertically puffed up inner rims. We find that, in general, the transition between the shadowed and flared regions occurs in a smooth manner over a broad radius range, and no sudden jump exists at the outer edge of the shadow in either the disk temperature or density structures. As a result, a puffed up rim cannot create sharp ring/arc/spiral-arm-like f…
We analyze a sample of 12 HST-selected edge-on protoplanetary disks for which the vertical extent of the emission layers can be constrained directly. We present ALMA high angular resolution continuum images (0.1arcsec) of these disks at two wavelengths, 0.89mm and 2.06mm (respectively ALMA bands 7 and 4), supplemented with archival band 6 data (1.33mm) where available. For most sources, the millimeter continuum emission is more compact than the scattered light, both in the vertical and radial directions. Six sources are resolved along their minor axis in at least one millimeter band, providing…
Elias 2-27 is a young star that hosts an extended, bright and inclined disk of dust and gas. The inclination and extreme flaring of the disk make Elias 2-27 an ideal target to study the vertical distribution of molecules, particularly CN. We directly trace the emission of CN in Elias 2-27 and compare it to previously published CO isotopologue data. CN $N = 3-2$ emission is analyzed in two different transitions $J = 7/2 - 5/2$ and $J = 5/2 - 3/2$, for which we detect two hyperfine group transitions. The vertical location of CN emission is traced directly from the channel maps, following geometr…
Spatially resolved observations of protoplanetary discs are revealing that their inner regions can be warped or broken from the outer disc. A few mechanisms are known to lead to such 3D structures; among them, the interaction with a stellar companion. We perform a 3D SPH simulation of a circumbinary disc misaligned by $60^\circ$ with respect to the binary orbital plane. The inner disc breaks from the outer regions, precessing as a rigid body, and leading to a complex evolution. As the inner disc precesses, the misalignment angle between the inner and outer discs varies by more than $100^\circ$…
Protoplanets can produce structures in protoplanetary disks via gravitational disk-planet interactions. Once detected, such structures serve as signposts of planet formation. Here we investigate the kinematic signatures in disks produced by multi-Jupiter mass ($M_{\rm J}$) planets using 3D hydrodynamics and radiative transfer simulations. Such a planet opens a deep gap, and drives transonic vertical motions inside. Such motions include both a bulk motion of the entire half-disk column, and turbulence on scales comparable to and smaller than the scale height. They significantly broaden molecula…
As the earliest stage of planet formation, massive, optically thick, and gas rich protoplanetary disks provide key insights into the physics of star and planet formation. When viewed edge-on, high resolution images offer a unique opportunity to study both the radial and vertical structures of these disks and relate this to vertical settling, radial drift, grain growth, and changes in the midplane temperatures. In this work, we present multi-epoch HST and Keck scattered light images, and an ALMA 1.3 mm continuum map for the remarkably flat edge-on protoplanetary disk SSTC2DJ163131.2-242627, a y…
Various physical processes that ensue within protoplanetary disks -- including vertical settling of icy/rocky grains, radial drift of solids, planetesimal formation, as well as planetary accretion itself -- are facilitated by hydrodynamic interactions between H/He gas and high-$Z$ dust. The Stokes number, which quantifies the strength of dust-gas coupling, thus plays a central role in protoplanetary disk evolution, and its poor determination constitutes an important source of uncertainty within the theory of planet formation. In this work, we present a simple model for dust-gas coupling, and d…
We analytically derive the expressions for the structure of the inner region of protoplanetary disks based on the results from the recent hydrodynamical simulations. The inner part of a disk can be divided into four regions: dust-free region with gas temperature in the optically thin limit, optically thin dust halo, optically thick condensation front and the classical optically thick region in order from the inside. We derive the dust-to-gas mass ratio profile in the dust halo using the fact that partial dust condensation regulates the temperature to the dust evaporation temperature. Beyond th…
High spatial resolution CO observations of mid-inclination (30-75°) protoplanetary disks offer an opportunity to study the vertical distribution of CO emission and temperature. The asymmetry of line emission relative to the disk major axis allows for a direct mapping of the emission height above the midplane, and for optically-thick, spatially-resolved emission in LTE, the intensity is a measure of the local gas temperature. Our analysis of ALMA archival data yields CO emission surfaces, dynamically-constrained stellar host masses, and disk atmosphere gas temperatures for the disks around: HD …
The streaming instability for solid particles in protoplanetary disks is re-examined assuming the familiar alpha ($α$) model for isotropic turbulence. Turbulence always reduces the growth rates of the streaming instability relative to values calculated for globally laminar disks. While for small values of the turbulence parameter, $α< 10^{-5}$, the wavelengths of the fastest-growing disturbances are small fractions of the local gas vertical scale height $H$, we find that for moderate values of the turbulence parameter, i.e., $α\sim 10^{-5}-10^{-3}$, the lengthscales of maximally growing distur…
