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arXiv 1004.3012math.AG
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表示树上基于群的马尔可夫过程的Algebraic varieties

Algebraic varieties representing group-based Markov processes on trees

Mateusz Michalek

摘要:

在本文中,我们完成的结果Sullivant和Sturmfels证明,许多代数群为基础的模型的马尔可夫过程的树是伪环面。我们还表明,在哪些情况下,这些品种是正常的。这是通过离散傅里叶变换方法的推广来完成的。在接下来的步骤中,在Sullivant和Sturmfels之后,我们描述了一个快速算法,找到与这些代数模型相关的多面体。然而,在我们的例子中,我们应用了套接字和网络的概念,扩展了Buczynska和Wisniewski的工作,他们介绍了二进制的情况。

英文摘要:

In this paper we complete the results of Sullivant and Sturmfels proving that many of the algebraic group-based models for Markov processes on trees are pseudo-toric. We also show in which cases these varieties are normal. This is done by the generalization of the discrete Fourier transform approach. In the next step, following Sullivant and Sturmfels, we describe a fast algorithm finding a polytope associated to these algebraic models. However in our case we apply the notions of sockets and networks extending the work of Buczynska and Wisniewski who introduced it for the binary case.

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