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arXiv 1004.2076cond-mat.stat-mech
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等压等温包络的广义包络算法

Generalized-Ensemble Algorithms for the Isobaric-Isothermal Ensemble

Yoshiharu Mori, Yuko Okamoto

摘要:

我们提出了广义系综算法的等压等温分子模拟。除了已经提出的等压-等温系综的多重-多热算法和复制-交换方法外,我们还提出了一种模拟回火方法。我们用这些算法对丙氨酸二肽体系在显式水分子中进行了分子动力学模拟,以测试算法的有效性。我们发现,这些广义系综算法都是有用的生物分子系统的等压-等温系综的构象采样。

英文摘要:

We present generalized-ensemble algorithms for isobaric-isothermal molecular simulations. In addition to the multibaric-multithermal algorithm and replica-exchange method for the isobaric-isothermal ensemble, which have already been proposed, we propose a simulated tempering method for this ensemble. We performed molecular dynamics simulations with these algorithms for an alanine dipeptide system in explicit water molecules to test the effectiveness of the algorithms. We found that these generalized-ensemble algorithms are all useful for conformational sampling of biomolecular systems in the isobaric-isothermal ensemble.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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