arXivDaily arXiv每日学术速递 周一至周五更新
arXiv周末暂无论文更新,休息一下吧,周末愉快~~
arXiv 0901.3369cond-mat.stat-mech
收藏

非平衡路径的密度相关分析改进了自由能估计

Density-Dependent Analysis of Nonequilibrium Paths Improves Free Energy Estimates

David D. L. Minh

摘要:

当一个系统被一个修改了哈密顿量的依赖于时间的协议从平衡态驱动出来时,它遵循一条非平衡路径。这些路径的样本可以在非平衡功定理中用来估计平衡态的量,比如自由能差。在这里,我们考虑使用另一个协议来分析由一个协议生成的路径。据推测,分析协议,最大限度地减少滞后,非平衡和瞬时平衡密度之间的差异,将减少耗散的再处理轨迹,并导致更好的自由能估计。事实上,当最小滞后分析协议的基础上,完全可溶的传播或相对熵被应用到几个测试情况下,大量的收益估计自由能差异的准确性和精度进行观察。

英文摘要:

When a system is driven out of equilibrium by a time-dependent protocol that modifies the Hamiltonian, it follows a nonequilibrium path. Samples of these paths can be used in nonequilibrium work theorems to estimate equilibrium quantities, such as free energy differences. Here, we consider analyzing paths generated with one protocol using another one. It is posited that analysis protocols which minimize the lag, the difference between the nonequilibrium and the instantaneous equilibrium densities, will reduce the dissipation of reprocessed trajectories and lead to better free energy estimates. Indeed, when minimal lag analysis protocols based on exactly soluble propagators or relative entropies are applied to several test cases, substantial gains in the accuracy and precision of estimated free energy differences are observed.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

↑