RAG / 检索增强生成

Retrieval augmented generation (RAG) depends critically on the quality and granularity of retrieved evidence. Large retrieval units preserve context but often introduce irrelevant content, which can dilute answer bearing evidence and worsen long context utilization. Fine-grained units are more compact, but they may be difficult to retrieve reliably because short chunks can lack semantic, lexical, or bridging cues needed to match the query. We propose Uncertainty-aware Multi-Granularity RAG (UMG-RAG), a training-free hybrid retrieval framework that treats chunk granularity as query-specific reliability estimation. Instead of training a new retriever or modifying the generator, UMG-RAG uses existing dense and sparse retrievers as complementary experts across multiple chunk granularities. For each query, it converts each expert-granularity score list into an evidence distribution, estimates reliability from distribution entropy, and fuses candidates according to query-specific semantic, lexical, and granularity confidence. We further introduce UMGP-RAG, a parent promotion variant that uses fine-grained hits to locate relevant evidence while returning broader non-redundant parent chunks for local coherence. Experiments on question answering benchmarks show that uncertainty-aware fusion and parent promotion improve generation quality while maintaining a lightweight, plug-and-play retrieval pipeline.

Injecting malicious knowledge into retrieval-augmented generation (RAG) systems can manipulate retrieved evidence and mislead downstream generation, posing a serious security threat for AI applications. Existing RAG injection attacks mainly rely on manipulating external knowledge bases, such as crafting malicious corpus. However, the synthetic text crafted by such data-centric methods could be detectable, leading to the failure of attacks. Beyond corpus manipulation, open-source retrievers are increasingly exposing RAG systems to model-centric attacks. In this paper, we propose conflict-aware retriever editing, i.e., CAREATTACK, a model-centric retriever attack framework for malicious knowledge injection in RAG. Specifically, CAREATTACK consists two stages of conflict-aware retriever editing and attack-preserving anchor repair. Conflict-aware retriever editing adapts efficient closed-form parameter editing to the dense retrieval model, promoting malicious knowledge above benign competing passages and resolving potential parameter conflicts through graph-based conflict detection and parameter editing projection. Then, attack-preserving anchor repair performs lightweight calibration on the edited retriever to further eliminate the impact on non-target prompts while preserving the attack effectiveness for target prompts. We instantiate CAREATTACK on Qwen3-Embedding-0.6B and BGE-M3, and conduct evaluation on three benchmark datasets. Experimental results demonstrate our method substantially promote malicious passages into the retrieved knowledge of RAG systems and can perform attacks for batches of target prompts and passages, given the access of retrieval model parameters. Since most RAG systems are built upon open-source retrieval models, this work reveals a practical attack surface in RAG systems. Codes are public accessible at https://anonymous.4open.science/r/CareAttack-3F1C.

Retrieval-augmented generation (RAG) over knowledge graphs requires retrievers that can effectively capture both graph structure and semantic information. Recent approaches have explored graph neural network (GNN)-based retrievers to model graph topology in multi-hop reasoning tasks. In parallel, graph language models (GLMs) have emerged as a promising paradigm that integrates graph reasoning and the semantic capabilities of language models. In this work, we introduce a GLM-based retriever and investigate the comparative strengths of GLM-based, GNN-based, and traditional vector-search-based retrievers in single- and multi-hop RAG settings, and with a particular focus on transferability to unseen domains. Our findings suggest that finetuned GLM retrievers generalize better out of domain, achieving SOTA on two multi-hop benchmarks. On in-domain multi-hop QA datasets they remain comparable to prior work, with promising scaling as parameters and subgraph coverage increase. GNN-based retrievers achieve higher graph coverage with an efficient training setup, whereas the vector-search baseline excels at single-hop datasets.

Scientific question answering requires a retrieval system to solve two distinct problems: identifying which papers are relevant and locating the supporting evidence within those papers. Conventional retrieval-augmented generation typically addresses both through similarity search over fixed-length passages, flattening document structure and separating scientific claims from their methodological and argumentative context. We present VecTree-RAG, an agentic framework that assigns these tasks to complementary retrieval mechanisms. Vector search ranks compact document and section representations across the corpus, whereas reasoning-guided traversal of source-verified section trees localizes evidence within shortlisted papers. Full text is retained in a page store and exposed progressively only after structural localization. We evaluate VecTree-RAG on 300 QASPER questions, an open-access subset of 54 LitQA2 questions, and 49 multi-document MOSAIC questions. Compared with Dense RAG, reranked Dense RAG, RAPTOR, and Search-o1, VecTree-RAG obtained the highest observed answer score on all three benchmarks, reaching 0.800 LLM-judge correctness on QASPER, 0.925 accuracy on LitQA2, and a 0.547 composite score on MOSAIC. On QASPER, its evidence-page precision was 0.274, compared with 0.046--0.071 for the baselines. LitQA2 ablations further showed that the complete vector--tree architecture required fewer inference tokens than variants without tree navigation or corpus-level vector routing. These results indicate that vector retrieval narrows the corpus-level search space and tree navigation concentrates reading on structurally relevant evidence. Although multi-turn inference remains more expensive than single-call retrieval, VecTree-RAG provides a structure-aware and traceable architecture for scientific literature question answering.

Retrieval-augmented generation (RAG) turns external documents into evidence for large language models. In practice, this is also a data access problem: a system must decide what to index, what to retrieve, and what evidence to place in the context under a token budget. Most RAG pipelines use text chunks for both lookup and generation. This couples two different objectives. Retrieval benefits from compact and discriminative records, while generation needs contextual and faithful evidence. As a result, small chunks may fragment answer-bearing information, whereas large chunks may introduce noise and waste the context budget. We propose M-RAG, a semantic key-value indexing layer for budget-constrained RAG query processing. M-RAG extracts meta-markers from complete documents, where each record contains a retrieval key, an information value, and provenance pointers. Online retrieval operates over the key field, which can be searched by dense vector retrieval or sparse lexical retrieval; the paired values are returned as generation payloads and assembled under the token budget. Provenance pointers further support coverage validation and position-aware context ordering. This design separates the physical index entry from the evidence payload without changing the underlying retriever or generator. Experiments on LongBench QA subtasks show that M-RAG achieves competitive or better accuracy than representative chunk-based baselines, especially under tight token budgets. Further analyses show high document coverage, stronger robustness under expanding candidate corpora, and lower online retrieval latency. These results suggest that semantic key-value indexing is a practical access method for RAG workloads.

Retrieval-augmented generation degrades when scaled to large, heterogeneous document collections, where dense similarity loses discriminative power, and top-k retrieval increasingly returns semantically similar but contextually incorrect chunks. We refer to this failure mode as vector search dilution. Even when using hybrid dense+sparse retrieval, we observed this firsthand in a deployed Wyoming Department of Transportation corpus, where scaling from 54 to 1,128 documents (88,907 chunks) reduced accuracy from 75% to below 40%. To address this dilution, we propose MASDR-RAG ( Multi-Agent Scoped Domain Retrieval for RAG) and evaluate it on 200 expert-validated queries across five LLM backbones, six corpora, and two index stacks. Our results indicate that domain scoping using organizational metadata is the key fix, significantly improving P@10 from 0.77 to 0.86 ($p < 0.05$). Furthermore, our investigation of multi-agent orchestration revealed that a high degree of configuration dependence results --creating what we call the precision-faithfulness paradox. Based on these varied outcomes, our practical recommendation is simple: scope first, then perform a single synthesis call, reserving full multi-agent orchestration for genuinely multi-domain corpora paired with native-tool-call backbones. Code and Data will be made public upon acceptance.

Dynamic Retrieval-Augmented Generation adaptively determines when to retrieve during generation to mitigate hallucinations in large language models (LLMs). However, existing methods rely on model-internal signals (e.g., logits, entropy), which are fundamentally unreliable because LLMs are typically ill-calibrated and often exhibit high confidence in erroneous outputs. We propose QuCo-RAG, which shifts from subjective confidence to objective statistics computed from pre-training data. Our method quantifies uncertainty through two stages: (1) before generation, we identify low-frequency entities indicating long-tail knowledge gaps; (2) during generation, we verify entity co-occurrence in the pre-training corpus, where zero co-occurrence often signals hallucination risk. Both stages leverage Infini-gram for millisecond-latency queries over 4 trillion tokens, triggering retrieval when uncertainty is high. Experiments on multi-hop QA benchmarks show QuCo-RAG achieves EM gains of 5--12 points over state-of-the-art baselines with OLMo-2 models, and transfers effectively to models with undisclosed pre-training data (Llama-3, Qwen2.5, GPT-4.1/5-chat), improving EM by up to 14 points. Generalization to long-form generation and biomedical QA further validates the robustness of our paradigm. These results establish corpus-grounded verification as a principled, practically model-agnostic paradigm for dynamic RAG. Our code is publicly available at https://github.com/ZhishanQ/QuCo-RAG.

Retrieval-Augmented Generation (RAG) has emerged as an important means of enhancing the performance of large language models (LLMs) in knowledge-intensive tasks. However, most existing RAG strategies treat retrieved passages in a flat and unstructured way, which prevents the model from capturing structural cues and constrains its ability to synthesize knowledge from dispersed evidence across documents. To overcome these limitations, we propose Disco-RAG, a discourse-aware framework that explicitly injects discourse signals into the generation process. Our method constructs intra-chunk discourse trees to capture local hierarchies and builds inter-chunk rhetorical graphs to model cross-passage coherence. These structures are jointly integrated into a planning blueprint that conditions the generation. Experiments on question answering and long-document summarization benchmarks show the efficacy of our approach. Disco-RAG achieves state-of-the-art results on the benchmarks without fine-tuning. These findings underscore the important role of discourse structure in advancing RAG systems.

Retrieval-Augmented Generation (RAG) systems combine dense retrievers and language models to ground their outputs in external documents. However, the interaction between these components remains opaque, creating challenges for deployment in high-stakes domains. We present RAG-E, an end-to-end explainability framework that quantifies retriever-generator alignment through mathematically grounded attribution methods. Our approach adapts Integrated Gradients for retriever analysis, proposes a Monte Carlo-stabilized Shapley Value approximation for generator attribution, and introduces the Weighted Attribution-Relevance Gap (WARG) metric to measure how closely the generator's document usage aligns with retriever rankings. Experiments on PopQA, QAMPARI, and TREC CAST datasets reveal substantial misalignment: depending on the model and setting, generators often ignore top-ranked documents and rely on documents ranked as less relevant. We show that WARG captures retriever-generator alignment better than Pearson and Spearman correlations and can serve as an indicator of RAG performance. RAG-E and WARG provide a practical framework for auditing this interaction, enabling more reliable and transparent RAG systems.

Retrieval-Augmented Generation (RAG) improves large language model applications by grounding generation in retrieved evidence, but also introduces corpus poisoning as a new attack surface. In this setting, an adversary injects or edits passages so that they enter the Top-$K$ results for target queries and influence downstream generation. Existing defences often rely on content filtering, auxiliary models, or generator-side reasoning, which complicates deployment. We propose ProGRank, a post hoc, training-free retriever-side defence for dense-retriever RAG. ProGRank stress-tests each query--passage pair under mild randomized perturbations, extracts probe gradients from a small fixed parameter subset, and derives two instability signals: representational consistency and dispersion risk. It then combines these signals with a score gate for reranking. ProGRank preserves the original passage content, requires no retraining, and supports a surrogate-based variant when the deployed retriever is unavailable. Experiments across datasets, retrievers, attacks, and retrieval-stage and end-to-end settings show that ProGRank improves robustness and maintains a favorable robustness--utility trade-off, including under adaptive evasive attacks.

Retrieval-augmented generation (RAG) systems rely on retrieval models for identifying relevant contexts and answer generation models for utilizing those contexts. However, retrievers exhibit imperfect recall and precision, limiting downstream performance. We introduce RAG-RL, an answer generation model trained not only to produce answers but also to identify and cite relevant information from larger sets of retrieved contexts, shifting some of the burden of identifying relevant documents from the retriever to the answer generator. Our approach uses curriculum learning, where the model is first trained on easier examples that include only relevant contexts. Our experiments show that these training samples enable models to acquire citation and reasoning skills with greater sample efficiency and generalizability, demonstrating strong model performance even as the number of irrelevant passages increases. We benchmark our methods on three open-domain multi-hop question answering datasets and report significant gains in answer and citation accuracy. Our experiments provide empirical insights into how easier training samples can give models stronger signals for learning specific skills (e.g., citation generation) and how different components of post-training (e.g., training set construction, rule-based rewards, training sample ordering, etc.) impact final model performance.

Dense retrievers in retrieval-augmented generation (RAG) systems exhibit systematic biases -- including brevity, position, literal matching, and repetition biases -- that can compromise retrieval quality. Query rewriting techniques are now standard in RAG pipelines, yet their impact on these biases remains unexplored. We present the first systematic study of how query enhancement techniques affect dense retrieval biases, evaluating five methods across six retrievers. Our findings reveal that simple LLM-based rewriting achieves the strongest aggregate bias reduction (54\%), yet fails under adversarial conditions where multiple biases combine. Mechanistic analysis uncovers two distinct mechanisms: simple rewriting reduces bias through increased score variance, while pseudo-document generation methods achieve reduction through genuine decorrelation from bias-inducing features. However, no technique uniformly addresses all biases, and effects vary substantially across retrievers. Our results provide practical guidance for selecting query enhancement strategies based on specific bias vulnerabilities. More broadly, we establish a taxonomy distinguishing query-document interaction biases from document encoding biases, clarifying the limits of query-side interventions for debiasing RAG systems.

Retrieval-augmented generation (RAG) systems typically rely on a single retriever and a single set of hyperparameters, despite facing highly heterogeneous queries that range from simple factoid questions to complex multi-hop reasoning. We propose a method that automatically selects a small, diverse subset of retrievers (a portfolio) from a large pool of candidates, to cover different regions of the target query distribution. We formalize this setting via an expected best-of-$k$ objective over the query distribution and show that it admits an efficient portfolio construction algorithm with near-optimal guarantees. Across multiple QA benchmarks, our learned portfolios and router pipeline consistently outperform single-retriever and naive multi-retriever baselines on both retrieval metrics and answer quality. In addition, compared to inference-time hyperparameter tuning approaches, fixed portfolios enable parallel retrieval and LLM calls, achieving comparable (and sometimes better) accuracy with substantially lower latency and token cost.

Retrieval-Augmented Generation (RAG) has become the standard way to ground large language models in external knowledge, yet most systems retrieve a fixed number of passages for every question regardless of its difficulty. This wastes computation on easy questions, starves hard ones, and gives no signal for when a generated answer can be trusted. With a growing share of question answering systems built on top of commercial language model APIs, a method that can decide how much to retrieve, and how far to trust its own answers, without retraining the underlying model, is of clear practical value. This paper presents AB-RAG (Adaptive Budgeted Retrieval-Augmented Generation), a training-free and backbone-agnostic framework that generates an answer, estimates its confidence from a combination of three signals, and then decides whether to stop or to retrieve more evidence, subject to a fixed retrieval budget. The estimator combines the model's own certainty, the agreement between the answer and the evidence, and the variance of the retrieval scores. For models that expose token probabilities the certainty signal is read directly; for closed APIs it is approximated by self-consistency, so the method works without access to model internals. Across three backbones and two datasets, the central result is that the confidence estimate reliably separates correct from incorrect answers on every backbone, reaching a clean split of 57.6% against 0% Exact Match between high- and low-confidence answers on a factoid dataset. The adaptive policy improves accuracy on capable backbones, and the study reports its negative and nuanced findings honestly, including a confidence signal that proved unsuitable for short answers and a retrieval signal whose sign was found and corrected through measurement. The entire study was carried out on a single consumer laptop with only a few dollars of API spend.

As an important paradigm for enhancing the generation quality of Large Language Models (LLMs), retrieval-augmented generation (RAG) faces the two challenges regarding retrieval accuracy and computational efficiency. This paper presents a novel RAG framework called Bridge-RAG. To overcome the accuracy challenge, we introduce the concept of abstract to bridge query entities and document chunks, providing robust semantic understanding. We organize the abstracts into a tree structure and design a multi-level retrieval strategy to ensure the inclusion of sufficient contextual information. While this hierarchical organization substantially improves answer quality, traversing the tree to locate the abstracts that contain a query entity inevitably introduces additional retrieval overhead. To restore retrieval efficiency, we further integrate the Cuckoo Filter in CFT-RAG, which provides O(1) entity lookup and naturally fits the entity-to-abstract pathway of our framework. Extensive experiments show that Bridge-RAG achieves consistent accuracy improvements across all metrics and up to $1.9\times$ faster retrieval compared to structured RAG baselines.

Retrieval-augmented generation (RAG) grounds answers in retrieved passages, yet relevance does not guarantee sufficiency: a topical passage may still fail to justify the answer. We study evidence sufficiency verification for selective RAG answering, in which a verifier receives a question, a candidate answer, and retrieved evidence and decides whether the evidence supports, refutes, or is insufficient for the answer, answering only when support is established. We present SURE-RAG, an aggregation protocol that treats evidence sufficiency as a set-level property: missing hops and unresolved conflicts cannot be detected by scoring passages independently. A shared claim-evidence verifier produces a local relation distribution for each (claim, passage) pair, which SURE-RAG aggregates into four interpretable answer-level feature blocks (coverage, relation strength, uncertainty, and retrieval), producing a three-way decision and an auditable selective score. We evaluate on HotpotQA-RAG v3, a controlled multi-hop benchmark, under an artifact-aware protocol (shortcut baselines, counterfactual swaps, no-oracle checks, and GPT-4o audits). Calibrated SURE-RAG attains 0.9075 Macro-F1 (raw 0.8951 +/- 0.0069), well above DeBERTa mean-pooling (0.6516) and a GPT-4o judge (0.7284), and on par with a strong concat cross-encoder (0.8888 +/- 0.0109) while remaining fully auditable. At 30% coverage, risk falls from 0.2588 to 0.1642, a 37% relative reduction. As a boundary-mapping experiment, we contrast SURE-RAG with GPT-4o on HaluBench unsafe detection: the ranking reverses (0.3343 vs. 0.7389 unsafe-F1), indicating that controlled sufficiency verification and natural hallucination detection are distinct problems.

We present a candidate-constrained retrieval-augmented generation system for LongEval-RAG, where each query is associated with an organizer-provided candidate set and all retrieved evidence and final citations must remain within that set. The system combines deterministic provenance tracking with passage-based retrieval, deterministic query expansion, pseudo-relevance feedback (PRF), reciprocal rank fusion (RRF), lightweight evidence reranking, citation-aware evidence aggregation, and optional MiniLM sentence reranking. We evaluate ten pipeline variants using a primary organizer evaluation and a supplementary self-generated diagnostic protocol. The primary evaluation shows that the strongest balanced variant is rule-minilm: a rule-based chunking pipeline with query expansion, PRF, RRF, reranking, citation prior, and late MiniLM sentence selection. This variant obtains the highest BERTScore, retrieval precision, nugget coverage, and average grade among our submissions. The result suggests that the main gain does not come from more complex semantic or topic-shift chunking, but from pairing stable rule-based evidence units with sentence-level neural selection before generation. The supplementary LLM-judge evaluation remains useful for early diagnosis and additional analysis, but it emphasizes different systems than the primary gold-answer and nugget-based evaluation, highlighting the need for multi-metric RAG evaluation.

Retrieval-Augmented Generation (RAG) enhances Large Language Models (LLMs) by incorporating external knowledge, effectively mitigating their inherent knowledge limitations. However, RAG remains vulnerable to poisoning attacks that manipulate retrieved texts to mislead model outputs. Existing defense mechanisms often lack theoretical robustness guarantees and perform unreliably when the LLM has limited knowledge of the retrieved content. In this work, we propose PRA-RAG, a provably robust retrieval aggregation algorithm designed to defend against poisoning attacks on retrieved texts. PRA-RAG samples multiple combinations of retrieved texts and utilizes geometric structures in the embedding space to identify a robust subset, from which a stable aggregated representation is derived. We provide theoretical bounds on the maximum impact of poisoned retrieved content and establish a quantitative measure of RAG's robustness. Experiments across multiple benchmarks and RAG architectures demonstrate that PRA-RAG reduces the attack success rate to as low as 1% while maintaining an accuracy of 71%, significantly outperforming representative state-of-the-art methods.

Retrieval-augmented generation (RAG) successfully grounds large language model (LLM) outputs in trusted documents, but factual grounding alone is insufficient for sensitive peer-support health communication. In domains such as HIV peer support, responses must also be accessible, stigma-free, empathetic, and tailored to the recipient. This paper presents TA-RAG, a lightweight, prompt-based tone-aware RAG framework that embeds explicit tone control into a RAG pipeline without requiring model fine-tuning. We operationalise tone across four core components: stigma-free rewriting, readability adjustment, recipient adaptation, and empathy rephrasing. We evaluate TA-RAG through component-level tests using questions derived from HIV Online Learning Australia (HOLA), UNAIDS terminology guidance, readability metrics, peer-support standards from National Association of People with HIV Australia (NAPWHA), and a public empathy dataset. Results show that the TA-RAG's components improve their targeted communication quality while preserving key content. These findings emphasise that prompt-based tone control is a potential direction for making RAG outputs suitable for sensitive peer-support health communication.

Retrieval-Augmented Generation (RAG) is widely employed to mitigate risks such as hallucinations and knowledge obsolescence in medical question answering, yet its predominantly single-round, static retrieval paradigm misaligns with the multi-stage process of clinical reasoning. This compressed workflow induces two structural deficiencies: question-to-query translation often lacks clinically grounded semantic interpretation, and retrieval lacks iterative sufficiency feedback, making it difficult to form reliable evidence chains. We argue that both issues stem from a deeper cause: overloading a single reasoning chain with heterogeneous tasks of interpretation, exploration, and adjudication. The remedy is to reconstruct the workflow via task decoupling and dynamic multi-round exploration. To this end, we propose SEMA-RAG, a Self-Evolving Multi-Agent RAG framework for medical question answering, which assigns these roles to three specialist agents: the Interpreter Agent for clinical schema interpretation, the Explorer Agent for sufficiency-driven self-evolving retrieval, and the Arbiter Agent for evidence adjudication and answer selection. Across five benchmarks and five LLM backbones, SEMA-RAG improves the strongest baseline by +6.46 accuracy points on average, measured per backbone.

The deployment of large language models (LLMs) like ChatGPT and Gemini has shown their powerful natural language generation capabilities. However, these models can inadvertently learn and retain sensitive information and harmful content during training, raising significant ethical and legal concerns. To address these issues, machine unlearning has been introduced as a potential solution. While existing unlearning methods take into account the specific characteristics of LLMs, they often suffer from high computational demands, limited applicability, or the risk of catastrophic forgetting. To address these limitations, we propose a lightweight behavioral unlearning framework based on Retrieval-Augmented Generation (RAG) technology. By modifying the external knowledge base of RAG, we simulate the effects of forgetting without directly interacting with the unlearned LLM. We approach the construction of unlearned knowledge as a constrained optimization problem, deriving two key components that underpin the effectiveness of RAG-based unlearning. This RAG-based approach is particularly effective for closed-source LLMs, where existing unlearning methods often fail. We evaluate our framework through extensive experiments on both open-source and closed-source models, including ChatGPT, Gemini, Llama-2-7b-chat, and PaLM 2. The results demonstrate that our approach meets five key unlearning criteria: effectiveness, universality, harmlessness, simplicity, and robustness. Meanwhile, this approach can extend to multimodal large language models and LLM-based agents.

Muon collider research spans accelerator physics, detector instrumentation, and high-energy phenomenology, with relevant evidence scattered across a rapidly expanding and heterogeneous body of scientific literature. As high-energy physics (HEP) increasingly explores agent-assisted analysis workflows, efficiently locating, integrating, and verifying scientific evidence becomes an essential capability. While retrieval-augmented generation (RAG) offers a promising framework for scientific question answering, integrating agentic reasoning without compromising retrieval precision remains a key challenge. In this work, we present agentic hybrid RAG, an evidence-grounded RAG framework for muon collider research. The framework combines a hybrid retriever, integrating sparse lexical and dense semantic retrieval, with an agentic reasoning module for query decomposition, evidence expansion, and grounded answer generation. To enable systematic evaluation, we construct the first benchmark for retrieval-augmented scientific question answering in the muon collider domain, comprising a curated literature corpus together with dedicated retrieval and answer-generation benchmarks covering major detector and physics research topics. Extensive evaluation shows that hybrid retrieval provides the strongest retrieval backbone, while agentic reasoning is most effective for controlled evidence expansion and answer synthesis. Built on this principle, agentic hybrid RAG consistently outperforms representative retrieval and RAG baselines in retrieval effectiveness, answer quality, evidence coverage, and factual grounding. Together, the benchmark and framework provide a foundation for evidence-grounded scientific question answering and future HEP analysis agents operating over large-scale scientific literature.

Retrieval-Augmented Generation (RAG) significantly enhances the ability of Large Language Models (LLMs) to provide accurate and contextually relevant answers by dynamically integrating external databases. However, traditional RAG methods are primarily constrained by their reliance on text-based retrieval strategies, which often struggle with complex questions requiring multi-hop reasoning. To address this limitation, we introduce Neural Graph Matching based Retrieval-Augmented Generation (NGM-RAG), a novel framework that leverages graph structures to effectively capture and utilize relational knowledge for improved retrieval and answer generation. NGM-RAG explicitly incorporates graph construction, graph matching, and answer generation into a unified process. Within this framework, we propose a neural graph matching approach that combines text-based matching with Graph Neural Networks (GNNs). By employing an adaptive weighting strategy, NGM-RAG efficiently integrates multiple matching methods to select the most relevant contextual node information for answer generation. Experimental results on multi-hop question answering and long-context summarization tasks demonstrate that our NGM-RAG model achieves superior performance compared to both traditional NaiveRAG methods and state-of-the-art graph-enhanced approaches such as GraphRAG and LightRAG.

Retrieval-Augmented Generation (RAG) systems enhance large language models by retrieving relevant documents from external knowledge bases. Recent work by Sarthi et al. (2024) introduced RAPTOR, which organizes documents into hierarchical tree structures for efficient retrieval, but requires expensive LLM-based abstractive summarization at each internal node -- making large-scale deployment prohibitively costly. We present SVD-RAG, the first method to apply Singular Value Decomposition (SVD) on dense sentence embedding matrices for extractive summarization in hierarchical RAG. Unlike classical LSA which operates on sparse TF-IDF matrices, SVD-RAG exploits the rich semantic representations of modern embedding models, identifying the most informative sentences through their energy contribution in the principal components. Our approach is (1) deterministic -- unlike LLM-based summarization, SVD produces identical results for the same input; (2) cost-efficient -- tree construction requires no additional API calls beyond the initial embedding, reducing token consumption by ~85%; and (3) content-adaptive -- the energy-ratio threshold tau automatically adjusts compression based on content complexity. In a controlled head-to-head comparison using identical corpora, clustering, and beam search, SVD-RAG achieves retrieval quality within 1-5% of RAPTOR with LLM summarization (MRR 0.867 vs. 0.875, Recall@1 0.483 vs. 0.458) while building the tree 317x faster (0.1s vs. 31.7s). On a scaled multi-topic benchmark with 205 chunks and 100 queries across 20 topic variations, SVD-RAG achieves a 4.2x improvement in Recall@1 and 3.1x improvement in MRR over flat embedding retrieval. We provide a detailed cost analysis and parameter sensitivity study. Our implementation is released as an open-source Python package.

Generalizable robotic grasping in cluttered environments is essential for deploying manipulators in unstructured human spaces, yet existing VLM-based methods rely on visual similarity for object matching, neglecting physical affordances such as handle graspability and material fragility, and operate open-loop without spatial reasoning or failure recovery, limiting their effectiveness when objects are densely packed or physically diverse. We present Agentic RAG-VLM, a unified framework that bridges VLM-based semantic understanding and physically grounded grasp execution by integrating retrieval-augmented generation (RAG) with vision-language models (VLMs) and agentic self-reflective planning. Agentic RAG-VLM introduces three tightly coupled components: (1) a Hierarchical Affordance-Aware RAG (HAA-RAG) that encodes four-dimensional affordance descriptors, including type, material, fragility, and graspable region, and retrieves strategies by functional affordance compatibility rather than visual appearance; (2) a Scene Graph Constraint Reasoner that constructs spatial relationship graphs from VLM perception and translates proximity, occlusion, and support constraints into concrete grasp parameter adjustments; and (3) an Agentic Self-Reflective Pipeline with a 14-type failure taxonomy and three-level adaptive retry for closed-loop grasp refinement. Evaluated on a 12-task benchmark spanning single-grasp, interactive, and long-horizon scenarios with 360 trials per configuration, Agentic RAG-VLM achieves 78.3 percent overall success, a 53.3 percentage-point absolute gain over VLM-only baselines, demonstrating that affordance-aware retrieval, scene graph reasoning, and agentic recovery are jointly essential for robust manipulation.

Large language models (LLMs) have shown promise for molecular property prediction, but their ability to reason over chemical structures remains limited, as molecular representations such as SMILES differ substantially from the natural language on which LLMs are primarily trained. To bridge this semantic and chemical knowledge gap, we propose MolE-RAG, a training-free, molecule-centric retrieval-augmented generation framework for LLM-based molecular property prediction. MolE-RAG augments each prediction with three complementary sources of inference-time context: retrieved chemistry literature, molecule-specific information including compound synonyms, identifiers, functional group annotations, and physicochemical descriptors, and structurally similar molecules retrieved from the training set. We evaluate MolE-RAG across nine molecular property prediction tasks using proprietary, chemistry-specialized, and open-source LLMs. Across general-purpose LLMs, MolE-RAG improves ROC-AUC by up to 28 percentage points on classification tasks and reduces regression RMSE by up to 67% relative to a SMILES-only baseline. We further find that the utility of each context source varies across models and tasks, with different models benefiting most from textual retrieval, molecular context, or structural retrieval. These results suggest that molecule-centric retrieval can improve LLM-based molecular property prediction without model fine-tuning while providing a flexible framework for integrating heterogeneous chemical knowledge at inference time.

Agentic Retrieval-Augmented Generation interleaves retrieval and reasoning for multi-hop QA and complex knowledge tasks. As reasoning trajectories lengthen, failures become more frequent, while existing methods often either stop at diagnosis or rely on coarse replanning and rerun-style recovery, incurring high computational cost. We propose DoctorRAG (DR-RAG), a diagnose-and-repair framework that corrects failures via explicit error localization and prefix reuse. DR-RAG operates in two stages: (i) trajectory-level failure diagnosis, where a distilled diagnosis model jointly assesses evidence sufficiency, classifies the failure type, and localizes the earliest failure point; and (ii) tool-conditioned local repair that intervenes only at the diagnosed point while reusing conditionally valid prefixes and retrieved evidence. By separating error attribution from correction, DR-RAG avoids blind reruns in a post-hoc repair setting and enables targeted, efficient correction of known failed trajectories. Experiments on three multi-hop QA benchmarks across multiple agentic RAG baselines and backbone models show substantial improvements in answer accuracy.

Retrieval-Augmented Generation (RAG) has become a common approach for improving the factuality of Large Language Models (LLMs), yet its reliability remains highly sensitive to how external evidence is retrieved and used. Semantically equivalent queries with different syntactic forms may lead to different retrieval results, while irrelevant or misleading documents can further induce hallucinated answers. Existing multi-path reasoning methods improve robustness by sampling multiple candidate answers and applying voting- or confidence-based selection, but they still face two limitations: diversity is often injected through uncontrollable decoding randomness, and answer evaluation is usually confined to a single query-induced evidence view. To address these limitations, we propose a Cross-Query Consistency Hypothesis: correct answers tend to maintain high confidence across semantically equivalent but syntactically diverse queries, whereas noise-induced hallucinations exhibit unstable confidence under such query variations. Based on this hypothesis, we introduce CQC-RAG, a framework that co-designs query-level diversity injection with cross-query consistency evaluation. CQC-RAG rewrites the original question into diverse but meaning-preserving queries, reranks a shared document pool to construct query-conditioned reasoning contexts, applies an evidence-grounded protocol to extract answer-evidence pairs and selects answers according to their confidence stability across these contexts. This design enables self-evaluation without external supervision and does not rely on expanded retrieval coverage. Experiments on four open-domain question answering benchmarks show that CQC-RAG outperforms the strongest previous multi-query baseline by +4.76 pp EM on TriviaQA and +9.12 pp EM on MuSiQue, validating the effectiveness of cross-query consistency for filtering noise-induced hallucinations.

Retrieval-augmented generation (RAG) systems may receive evidence that is not merely noisy but mutually contradictory. This issue becomes particularly salient in multilingual settings, where retrieved Chinese and English evidence may support incompatible answer candidates. We study this problem through X-RAMDocs-ZHEN, a controlled Chinese-English benchmark derived from RAMDocs for diagnosing evidence conflict in RAG. The benchmark contains 300 examples across six balanced conditions, including monolingual support, bilingual agreement, reversed conflict directions, and conflict with optional noise. We further examine X-MADAM-RAG, an interpretable pipeline that decomposes evidence handling into per-document candidate extraction, visible-evidence repair, deterministic candidate grouping, and conflict-aware aggregation. On the original controlled benchmark with Qwen2.5-7B-Instruct, X-MADAM-RAG achieves 0.9667 strict accuracy and 0.9767 conflict-aware success, outperforming an evidence-normalized single-call baseline. However, a zero-call rule-only extractor reaches 1.0000 on the same benchmark, revealing strong template regularity. To probe this limitation, we construct a deterministic naturalized stress test that removes explicit answer templates while preserving candidate strings. On its 100-sample subset, rule-only extraction falls to 0.0000, but X-MADAM-RAG also drops to 0.3000 strict accuracy, below both naive and evidence-normalized baselines. A privileged oracle remains perfect, indicating that document-level extraction is the main bottleneck. These findings position X-RAMDocs-ZHEN and X-MADAM-RAG as diagnostic tools for controlled evidence conflict rather than as evidence of general hallucination detection or robustness to natural retrieval.

Retrieval-Augmented Generation (RAG) has shown strong effectiveness in grounding Large Language Models (LLMs) with external knowledge. However, existing RAG and Graph RAG frameworks largely treat knowledge as static or associate time with coarse-grained timestamps or metadata, failing to capture rich temporal structures such as duration, overlap, and containment. We propose IA-RAG, a hierarchical temporal RAG framework that models knowledge as time intervals and performs retrieval under formal temporal constraints. IA-RAG represents facts as Interval Event Units (IEUs) and organizes them into a hierarchical Thematic Forest, where temporal dependencies are governed by Allen's Interval Algebra. To handle incomplete or uncertain temporal boundaries, IA-RAG further introduces a Sub-graph Time Tightening mechanism that refines fuzzy intervals through logical constraints within connected event subgraphs. In addition, IA-RAG supports implicit temporal semantic retrieval through interval-algebra-guided traversal. Experiments on multiple temporal question answering benchmarks, including TimeQA, TempReason, and ComplexTR, demonstrate that IA-RAG achieves strong temporal retrieval and reasoning performance, particularly on complex compositional temporal reasoning tasks. Our code is released at https://github.com/xiaoAugenstern/LogicalRAG_TemporalQA.