Non-negative matrix factorization (NMF) is a recently developed technique for finding parts-based, linear representations of non-negative data. Although it has successfully been applied in several applications, it does not always result in parts-based representations. In this paper, we show how explicitly incorporating the notion of `sparseness' improves the found decompositions. Additionally, we provide complete MATLAB code both for standard NMF and for our extension. Our hope is that this will further the application of these methods to solving novel data-analysis problems.
Due to recent explosion of text data, researchers have been overwhelmed by ever-increasing volume of articles produced by different research communities. Various scholarly search websites, citation recommendation engines, and research databases have been created to simplify the text search tasks. However, it is still difficult for researchers to be able to identify potential research topics without doing intensive reviews on a tremendous number of articles published by journals, conferences, meetings, and workshops. In this paper, we consider a novel topic diffusion discovery technique that in…
Qingdao University（青岛大学）；Harbin Institute of Technology（哈尔滨工业大学）；University of Electronic Science and Technology of China（电子科技大学）；University of Kentucky（肯塔基大学）
Nonnegative matrix factorization (NMF) has been widely studied in recent years due to its effectiveness in representing nonnegative data with parts-based representations. For NMF, a sparser solution implies better parts-based representation.However, current NMF methods do not always generate sparse solutions.In this paper, we propose a new NMF method with log-norm imposed on the factor matrices to enhance the sparseness.Moreover, we propose a novel column-wisely sparse norm, named $\ell_{2,\log}$-(pseudo) norm to enhance the robustness of the proposed method.The $\ell_{2,\log}$-(pseudo) norm i…
Toronto Metropolitan University（多伦多都会大学）；University of Toronto（多伦多大学）
The selection of most informative and discriminative features from high-dimensional data has been noticed as an important topic in machine learning and data engineering. Using matrix factorization-based techniques such as nonnegative matrix factorization for feature selection has emerged as a hot topic in feature selection. The main goal of feature selection using matrix factorization is to extract a subspace which approximates the original space but in a lower dimension. In this study, rank revealing QR (RRQR) factorization, which is computationally cheaper than singular value decomposition (…
The paper discusses a pooling mechanism to induce subsampling in graph structured data and introduces it as a component of a graph convolutional neural network. The pooling mechanism builds on the Non-Negative Matrix Factorization (NMF) of a matrix representing node adjacency and node similarity as adaptively obtained through the vertices embedding learned by the model. Such mechanism is applied to obtain an incrementally coarser graph where nodes are adaptively pooled into communities based on the outcomes of the non-negative factorization. The empirical analysis on graph classification bench…
We present a novel game-theoretic formulation of Non-Negative Matrix Factorization (NNMF), a popular data-analysis method with many scientific and engineering applications. The game-theoretic formulation is shown to have favorable scaling and parallelization properties, while retaining reconstruction and convergence performance comparable to the traditional Multiplicative Updates algorithm.
Institut Charles Delaunay (CNRS)（查尔斯·德洛奈研究所（法国国家科学研究中心））；Université de Technologie de Troyes（特鲁瓦技术大学）；LITIS lab（LITIS实验室）；Université de Rouen（鲁昂大学）；Centre de Recherche en Automatique de Nancy (CNRS)（南锡自动化研究中心（法国国家科学研究中心））；Université de Lorraine（洛林大学）
The nonnegative matrix factorization (NMF) is widely used in signal and image processing, including bio-informatics, blind source separation and hyperspectral image analysis in remote sensing. A great challenge arises when dealing with a nonlinear formulation of the NMF. Within the framework of kernel machines, the models suggested in the literature do not allow the representation of the factorization matrices, which is a fallout of the curse of the pre-image. In this paper, we propose a novel kernel-based model for the NMF that does not suffer from the pre-image problem, by investigating the …
The text-critical practice of grouping witnesses into families or texttypes often faces two obstacles: Contamination in the manuscript tradition, and co-dependence in identifying characteristic readings and manuscripts. We introduce non-negative matrix factorization (NMF) as a simple, unsupervised, and efficient way to cluster large numbers of manuscripts and readings simultaneously while summarizing contamination using an easy-to-interpret mixture model. We apply this method to an extensive collation of the New Testament epistle of Jude and show that the resulting clusters correspond to human…
We propose a method for computing binary orthogonal non-negative matrix factorization (BONMF) for clustering and classification. The method is tested on several representative real-world data sets. The numerical results confirm that the method has improved accuracy compared to the related techniques. The proposed method is fast for training and classification and space efficient.
Non-Negative Matrix Factorization (NMF) is a valuable matrix factorization technique which produces a "parts-based" decomposition of data sets. Wi-Fi user counts are a privacy-preserving indicator of population movements in smart and connected urban environments. In this paper, we apply NMF with a novel matrix embedding to Wi-Fi user count data from the University of Colorado at Boulder Campus for the purpose of automatically identifying patterns of human movement in a Smart and Connected infrastructure environment.
Sultan Qaboos University（苏丹卡布斯大学）；École de technologie supérieure（高等技术学院）
The model described in this paper belongs to the family of non-negative matrix factorization methods designed for data representation and dimension reduction. In addition to preserving the data positivity property, it aims also to preserve the structure of data during matrix factorization. The idea is to add, to the NMF cost function, a penalty term to impose a scale relationship between the pairwise similarity matrices of the original and transformed data points. The solution of the new model involves deriving a new parametrized update scheme for the coefficient matrix, which makes it possibl…
In this paper, we present our work on clustering and prediction of temporal dynamics of global congestion configurations in large-scale road networks. Instead of looking into temporal traffic state variation of individual links, or of small areas, we focus on spatial congestion configurations of the whole network. In our work, we aim at describing the typical temporal dynamic patterns of this network-level traffic state and achieving long-term prediction of the large-scale traffic dynamics, in a unified data-mining framework. To this end, we formulate this joint task using Non-negative Tensor …
Fox Chase Cancer Center, Temple University Health System（天普大学卫生系统福克斯·蔡斯癌症中心）
A theoretical framework for non-negative matrix factorization based on generalized dual Kullback-Leibler divergence, which includes members of the exponential family of models, is proposed. A family of algorithms is developed using this framework and its convergence proven using the Expectation-Maximization algorithm. The proposed approach generalizes some existing methods for different noise structures and contrasts with the recently proposed quasi-likelihood approach, thus providing a useful alternative for non-negative matrix factorizations. A measure to evaluate the goodness-of-fit of the …
Columbia University（哥伦比亚大学）；Colorado State University（科罗拉多州立大学）；Stony Brook University（石溪大学）；Brookhaven National Laboratory（布鲁克海文国家实验室）
We validate the use of matrix factorization for the automatic identification of relevant components from atomic pair distribution function (PDF) data. We also present a newly developed software infrastructure for analyzing the PDF data arriving in streaming manner. We then apply two matrix factorization techniques, Principal Component Analysis (PCA) and Non-negative Matrix Factorization (NMF), to study simulated and experiment datasets in the context of in situ experiment.
IRIT, Université de Toulouse, CNRS（图卢兹大学 IRIT 研究所、法国国家科学研究中心）
We introduce negative binomial matrix factorization (NBMF), a matrix factorization technique specially designed for analyzing over-dispersed count data. It can be viewed as an extension of Poisson matrix factorization (PF) perturbed by a multiplicative term which models exposure. This term brings a degree of freedom for controlling the dispersion, making NBMF more robust to outliers. We show that NBMF allows to skip traditional pre-processing stages, such as binarization, which lead to loss of information. Two estimation approaches are presented: maximum likelihood and variational Bayes infere…
Dartmouth College（达特茅斯学院）；California State University at Los Angeles（加州州立大学洛杉矶分校）
The Baum-Welsh algorithm together with its derivatives and variations has been the main technique for learning Hidden Markov Models (HMM) from observational data. We present an HMM learning algorithm based on the non-negative matrix factorization (NMF) of higher order Markovian statistics that is structurally different from the Baum-Welsh and its associated approaches. The described algorithm supports estimation of the number of recurrent states of an HMM and iterates the non-negative matrix factorization (NMF) algorithm to improve the learned HMM parameters. Numerical examples are provided as…
Xidian University（西安电子科技大学）；Chongqing University of Posts and Telecommunications（重庆邮电大学）
Multi-view clustering (MVC) based on non-negative matrix factorization (NMF) and its variants have received a huge amount of attention in recent years due to their advantages in clustering interpretability. However, existing NMF-based multi-view clustering methods perform NMF on each view data respectively and ignore the impact of between-view. Thus, they can't well exploit the within-view spatial structure and between-view complementary information. To resolve this issue, we present semi-non-negative tensor factorization (Semi-NTF) and develop a novel multi-view clustering based on Semi-NTF w…
University of Maryland（马里兰大学）；IBM T.J. Watson Research Center（IBM托马斯·J·沃森研究中心）
The separability assumption (Donoho & Stodden, 2003; Arora et al., 2012) turns non-negative matrix factorization (NMF) into a tractable problem. Recently, a new class of provably-correct NMF algorithms have emerged under this assumption. In this paper, we reformulate the separable NMF problem as that of finding the extreme rays of the conical hull of a finite set of vectors. From this geometric perspective, we derive new separable NMF algorithms that are highly scalable and empirically noise robust, and have several other favorable properties in relation to existing methods. A parallel impleme…
Non-negative matrix factorization (NMF) approximates a given matrix as a product of two non-negative matrices. Multiplicative algorithms deliver reliable results, but they show slow convergence for high-dimensional data and may be stuck away from local minima. Gradient descent methods have better behavior, but only apply to smooth losses such as the least-squares loss. In this article, we propose a first-order primal-dual algorithm for non-negative decomposition problems (where one factor is fixed) with the KL divergence, based on the Chambolle-Pock algorithm. All required computations may be …
IRIT, Université de Toulouse, CNRS（图卢兹大学 IRIT 研究所、法国国家科学研究中心）；ISAE-SUPAERO, Université de Toulouse（图卢兹大学 ISAE-SUPAERO 高等航空与航天学院）
We introduce a new non-negative matrix factorization (NMF) method for ordinal data, called OrdNMF. Ordinal data are categorical data which exhibit a natural ordering between the categories. In particular, they can be found in recommender systems, either with explicit data (such as ratings) or implicit data (such as quantized play counts). OrdNMF is a probabilistic latent factor model that generalizes Bernoulli-Poisson factorization (BePoF) and Poisson factorization (PF) applied to binarized data. Contrary to these methods, OrdNMF circumvents binarization and can exploit a more informative repr…
University of California, Los Angeles（加利福尼亚大学洛杉矶分校）
Classification and topic modeling are popular techniques in machine learning that extract information from large-scale datasets. By incorporating a priori information such as labels or important features, methods have been developed to perform classification and topic modeling tasks; however, most methods that can perform both do not allow for guidance of the topics or features. In this paper, we propose a method, namely Guided Semi-Supervised Non-negative Matrix Factorization (GSSNMF), that performs both classification and topic modeling by incorporating supervision from both pre-assigned doc…
Columbia University（哥伦比亚大学）；Adobe Research（Adobe研究院）；Adobe Systems Incorporated（奥多比系统公司）
Beta process is the standard nonparametric Bayesian prior for latent factor model. In this paper, we derive a structured mean-field variational inference algorithm for a beta process non-negative matrix factorization (NMF) model with Poisson likelihood. Unlike the linear Gaussian model, which is well-studied in the nonparametric Bayesian literature, NMF model with beta process prior does not enjoy the conjugacy. We leverage the recently developed stochastic structured mean-field variational inference to relax the conjugacy constraint and restore the dependencies among the latent variables in t…
Ruder Bošković Institute（鲁杰尔·博什科维奇研究所）；ETH Zürich, Swiss Federal Institute of Technology（苏黎世联邦理工学院）
A recent theoretical analysis shows the equivalence between non-negative matrix factorization (NMF) and spectral clustering based approach to subspace clustering. As NMF and many of its variants are essentially linear, we introduce a nonlinear NMF with explicit orthogonality and derive general kernel-based orthogonal multiplicative update rules to solve the subspace clustering problem. In nonlinear orthogonal NMF framework, we propose two subspace clustering algorithms, named kernel-based non-negative subspace clustering KNSC-Ncut and KNSC-Rcut and establish their connection with spectral norm…
The University of Texas at Austin（德克萨斯大学奥斯汀分校）；New York University（纽约大学）
This work proposes a new algorithm for automated and simultaneous phenotyping of multiple co-occurring medical conditions, also referred as comorbidities, using clinical notes from the electronic health records (EHRs). A basic latent factor estimation technique of non-negative matrix factorization (NMF) is augmented with domain specific constraints to obtain sparse latent factors that are anchored to a fixed set of chronic conditions. The proposed anchoring mechanism ensures a one-to-one identifiable and interpretable mapping between the latent factors and the target comorbidities. Qualitative…
In this paper, we propose a new non-monotone conjugate gradient method for solving unconstrained nonlinear optimization problems. We first modify the non-monotone line search method by introducing a new trigonometric function to calculate the non-monotone parameter, which plays an essential role in the algorithm's efficiency. Then, we apply a convex combination of the Barzilai-Borwein method for calculating the value of step size in each iteration. Under some suitable assumptions, we prove that the new algorithm has the global convergence property. The efficiency and effectiveness of the propo…
University of Maryland（马里兰大学）；Los Alamos National Laboratory（洛斯阿拉莫斯国家实验室）
We utilize a recently developed topic modeling method called SeNMFk, extending the standard Non-negative Matrix Factorization (NMF) methods by incorporating the semantic structure of the text, and adding a robust system for determining the number of topics. With SeNMFk, we were able to extract coherent topics validated by human experts. From these topics, a few are relatively general and cover broad concepts, while the majority can be precisely mapped to specific scientific effects or measurement techniques. The topics also differ by ubiquity, with only three topics prevalent in almost 40 perc…
Multi-view learning accomplishes the task objectives of classification by leverag-ing the relationships between different views of the same object. Most existing methods usually focus on consistency and complementarity between multiple views. But not all of this information is useful for classification tasks. Instead, it is the specific discriminating information that plays an important role. Zhong Zhang et al. explore the discriminative and non-discriminative information exist-ing in common and view-specific parts among different views via joint non-negative matrix factorization. In this pape…
Non-negative matrix factorization (NMF) is a new knowledge discovery method that is used for text mining, signal processing, bioinformatics, and consumer analysis. However, its basic property as a learning machine is not yet clarified, as it is not a regular statistical model, resulting that theoretical optimization method of NMF has not yet established. In this paper, we study the real log canonical threshold of NMF and give an upper bound of the generalization error in Bayesian learning. The results show that the generalization error of the matrix factorization can be made smaller than regul…
University of Southern California（南加州大学）；Kobe University（神户大学）；CyberAgent, Inc.（CyberAgent 公司）；Information Sciences Institute, University of Southern California（南加州大学信息科学研究所）
Understanding consumer behavior is an important task, not only for developing marketing strategies but also for the management of economic policies. Detecting consumption patterns, however, is a high-dimensional problem in which various factors that would affect consumers' behavior need to be considered, such as consumers' demographics, circadian rhythm, seasonal cycles, etc. Here, we develop a method to extract multi-timescale expenditure patterns of consumers from a large dataset of scanned receipts. We use a non-negative tensor factorization (NTF) to detect intra- and inter-week consumption…
The Chinese University of Hong Kong, Shenzhen（香港中文大学（深圳））；University of Science and Technology of China（中国科学技术大学）；Shenzhen Research Institute of Big Data（深圳市大数据研究院）；Warshel Institute for Computational Biology, The Chinese University of Hong Kong, Shenzhen（香港中文大学（深圳）瓦谢尔计算生物研究院）
Non-negative matrix factorization (NMF) is a powerful tool for dimensionality reduction and clustering. Unfortunately, the interpretation of the clustering results from NMF is difficult, especially for the high-dimensional biological data without effective feature selection. In this paper, we first introduce a row-sparse NMF with $\ell_{2,0}$-norm constraint (NMF_$\ell_{20}$), where the basis matrix $W$ is constrained by the $\ell_{2,0}$-norm, such that $W$ has a row-sparsity pattern with feature selection. It is a challenge to solve the model, because the $\ell_{2,0}$-norm is non-convex and n…
Peking University（北京大学）；Peng Cheng Laboratory（鹏城实验室）；University of Edinburgh（爱丁堡大学）；University of Leicester（莱斯特大学）
Neuronal circuits formed in the brain are complex with intricate connection patterns. Such complexity is also observed in the retina as a relatively simple neuronal circuit. A retinal ganglion cell receives excitatory inputs from neurons in previous layers as driving forces to fire spikes. Analytical methods are required that can decipher these components in a systematic manner. Recently a method termed spike-triggered non-negative matrix factorization (STNMF) has been proposed for this purpose. In this study, we extend the scope of the STNMF method. By using the retinal ganglion cell as a mod…
University of Applied Sciences and Arts, Northwestern Switzerland（瑞士西北应用科学与艺术大学）；University of Ljubljana（卢布尔雅那大学）
This article utilizes the projected gradient method (PG) for a non-negative matrix factorization problem (NMF), where one or both matrix factors must have orthonormal columns or rows. We penalise the orthonormality constraints and apply the PG method via a block coordinate descent approach. This means that at a certain time one matrix factor is fixed and the other is updated by moving along the steepest descent direction computed from the penalised objective function and projecting onto the space of non-negative matrices. Our method is tested on two sets of synthetic data for various values of…
Non-negative matrix factorization (NMF) is a natural model of admixture and is widely used in science and engineering. A plethora of algorithms have been developed to tackle NMF, but due to the non-convex nature of the problem, there is little guarantee on how well these methods work. Recently a surge of research have focused on a very restricted class of NMFs, called separable NMF, where provably correct algorithms have been developed. In this paper, we propose the notion of subset-separable NMF, which substantially generalizes the property of separability. We show that subset-separability is…
IBM Research（IBM研究院）；University of Texas at Austin（德克萨斯大学奥斯汀分校）；University of Rochester（罗切斯特大学）
Identifying significant location categories visited by mobile users is the key to a variety of applications. This is an extremely challenging task due to the possible deviation between the estimated location coordinate and the actual location, which could be on the order of kilometers. To estimate the actual location category more precisely, we propose a novel tensor factorization framework, through several key observations including the intrinsic correlations between users, to infer the most likely location categories within the location uncertainty circle. In addition, the proposed algorithm…
University of Maryland, Baltimore County（马里兰大学巴尔的摩郡分校）；LANL（洛斯阿拉莫斯国家实验室）
Non-negative matrix factorization (NMF) with missing-value completion is a well-known effective Collaborative Filtering (CF) method used to provide personalized user recommendations. However, traditional CF relies on the privacy-invasive collection of users' explicit and implicit feedback to build a central recommender model. One-shot federated learning has recently emerged as a method to mitigate the privacy problem while addressing the traditional communication bottleneck of federated learning. In this paper, we present the first unsupervised one-shot federated CF implementation, named FedSP…
Academy of Advanced Interdisciplinary Research, Xidian University（西安电子科技大学先进交叉学科研究院）；Center for OPTical Imagery Analysis and Learning (OPTIMAL), Northwestern Polytechnical University（西北工业大学光学图像分析与学习中心）；Key Laboratory of Intelligent Perception and Image Understanding of Ministry of Education, International Research Center for Intelligent Perception and Computation, Xidian University（西安电子科技大学教育部智能感知与图像理解重点实验室、国际智能感知与计算研究中心）
Non-negative Matrix Factorization (NMF) is one of the most popular techniques for data representation and clustering, and has been widely used in machine learning and data analysis. NMF concentrates the features of each sample into a vector, and approximates it by the linear combination of basis vectors, such that the low-dimensional representations are achieved. However, in real-world applications, the features are usually with different importances. To exploit the discriminative features, some methods project the samples into the subspace with a transformation matrix, which disturbs the orig…
Swiss Federal Institute of Technology (EPFL)（瑞士联邦理工学院（洛桑联邦理工学院））
This work formulates a novel song recommender system as a matrix completion problem that benefits from collaborative filtering through Non-negative Matrix Factorization (NMF) and content-based filtering via total variation (TV) on graphs. The graphs encode both playlist proximity information and song similarity, using a rich combination of audio, meta-data and social features. As we demonstrate, our hybrid recommendation system is very versatile and incorporates several well-known methods while outperforming them. Particularly, we show on real-world data that our model overcomes w.r.t. two eva…
Non-negative matrix factorization (NMF) has become a well-established class of methods for the analysis of non-negative data. In particular, a lot of effort has been devoted to probabilistic NMF, namely estimation or inference tasks in probabilistic models describing the data, based for example on Poisson or exponential likelihoods. When dealing with time series data, several works have proposed to model the evolution of the activation coefficients as a non-negative Markov chain, most of the time in relation with the Gamma distribution, giving rise to so-called temporal NMF models. In this pap…
Non-negative matrix factorization (NMF) is a dimensionality reduction technique which tends to produce a sparse representation of data. Commonly, the error between the actual and recreated matrices is used as an objective function, but this method may not produce the type of representation we desire as it allows for the complexity of the model to grow, constrained only by the size of the subspace and the non-negativity requirement. If additional constraints, such as sparsity, are imposed the question of parameter selection becomes critical. Instead of adding sparsity constraints in an ad-hoc m…
Non-negative Matrix Factorization (NMF) is a key kernel for unsupervised dimension reduction used in a wide range of applications, including topic modeling, recommender systems and bioinformatics. Due to the compute-intensive nature of applications that must perform repeated NMF, several parallel implementations have been developed in the past. However, existing parallel NMF algorithms have not addressed data locality optimizations, which are critical for high performance since data movement costs greatly exceed the cost of arithmetic/logic operations on current computer systems. In this paper…
Non-negative matrix factorization is a popular tool for decomposing data into feature and weight matrices under non-negativity constraints. It enjoys practical success but is poorly understood theoretically. This paper proposes an algorithm that alternates between decoding the weights and updating the features, and shows that assuming a generative model of the data, it provably recovers the ground-truth under fairly mild conditions. In particular, its only essential requirement on features is linear independence. Furthermore, the algorithm uses ReLU to exploit the non-negativity for decoding t…
We present a Bayesian non-negative tensor factorization model for count-valued tensor data, and develop scalable inference algorithms (both batch and online) for dealing with massive tensors. Our generative model can handle overdispersed counts as well as infer the rank of the decomposition. Moreover, leveraging a reparameterization of the Poisson distribution as a multinomial facilitates conjugacy in the model and enables simple and efficient Gibbs sampling and variational Bayes (VB) inference updates, with a computational cost that only depends on the number of nonzeros in the tensor. The mo…
Urban areas provide us with a treasure trove of available data capturing almost every aspect of a population's life. This work focuses on mobility data and how it will help improve our understanding of urban mobility patterns. Readily available and sizable farecard data captures trips in a public transportation network. However, such data typically lacks temporal modalities and as such the task of inferring trip semantic, station function, and user profile is quite challenging. As existing approaches either focus on station-level or user-level signals, they are prone to overfitting and generat…
University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；City University of Hong Kong（香港城市大学）
Emergency Department (ED) crowding is a worldwide issue that affects the efficiency of hospital management and the quality of patient care. This occurs when the request for an admit ward-bed to receive a patient is delayed until an admission decision is made by a doctor. To reduce the overcrowding and waiting time of ED, we build a classifier to predict the disposition of patients using manually-typed nurse notes collected during triage, thereby allowing hospital staff to begin necessary preparation beforehand. However, these triage notes involve high dimensional, noisy, and also sparse text d…
Non-negative matrix factorization (NMF) has become a popular method for representing meaningful data by extracting a non-negative basis feature from an observed non-negative data matrix. Some of the unique features of this method in identifying hidden data put this method amongst the powerful methods in the machine learning area. The NMF is a known non-convex optimization problem and the initial point has a significant effect on finding an efficient local solution. In this paper, we investigate the most popular initialization procedures proposed for NMF so far. We describe each method and pres…
Motivated by applications in hyperspectral imaging we investigate methods for approximating a high-dimensional non-negative matrix $\mathbf{\mathit{Y}}$ by a product of two lower-dimensional, non-negative matrices $\mathbf{\mathit{K}}$ and $\mathbf{\mathit{X}}.$ This so-called non-negative matrix factorization is based on defining suitable Tikhonov functionals, which combine a discrepancy measure for $\mathbf{\mathit{Y}}\approx\mathbf{\mathit{KX}}$ with penalty terms for enforcing additional properties of $\mathbf{\mathit{K}}$ and $\mathbf{\mathit{X}}$. The minimization is based on alternating…
