arXivDaily arXiv每日学术速递 周一至周五更新
arXiv周末暂无论文更新,休息一下吧,周末愉快~~
arXiv 2407.06334cs.AIq-bio.QM
收藏

带目标约束双向搜索的双端合成规划

Double-Ended Synthesis Planning with Goal-Constrained Bidirectional Search

MIT(麻省理工学院);Georgia Tech(佐治亚理工学院)

Kevin Yu, Jihye Roh, Ziang Li, Wenhao Gao, Runzhong Wang, Connor W. Coley

AI总结:

针对现有计算机辅助合成规划算法无法满足指定起始原料约束的问题,提出基于双向图搜索的DESP算法,由离线学习的目标条件成本网络引导,在新基准上提升了求解率、减少了搜索扩展,且可复用现有单步逆合成模型。

摘要:

计算机辅助合成规划(CASP)算法已在规划低到中等复杂度分子的逆合成路线方面展现出专家级能力。然而,当前的搜索方法默认抵达任意结构单元即可,未能解决现实中常见的需要使用特定分子的约束问题。为此,我们提出了带起始原料约束的合成规划公式。在该公式下,我们提出了双端合成规划(DESP)——一种基于双向图搜索框架的新型CASP算法,它交替从目标分子和指定起始原料出发进行扩展,以确保约束满足性。该搜索算法由一个目标条件成本网络引导,该网络从部分观测的有效化学反应超图中离线学习得到。我们在多个新基准上验证了DESP的效用:通过让合成规划偏向专家设定的目标,它提升了求解率并减少了搜索扩展次数。DESP可以复用现有的单步逆合成模型,我们预计随着这些单步模型能力的提升,其性能也会相应提升。

英文摘要:

Computer-aided synthesis planning (CASP) algorithms have demonstrated expert-level abilities in planning retrosynthetic routes to molecules of low to moderate complexity. However, current search methods assume the sufficiency of reaching arbitrary building blocks, failing to address the common real-world constraint where using specific molecules is desired. To this end, we present a formulation of synthesis planning with starting material constraints. Under this formulation, we propose Double-Ended Synthesis Planning (DESP), a novel CASP algorithm under a bidirectional graph search scheme that interleaves expansions from the target and from the goal starting materials to ensure constraint satisfiability. The search algorithm is guided by a goal-conditioned cost network learned offline from a partially observed hypergraph of valid chemical reactions. We demonstrate the utility of DESP in improving solve rates and reducing the number of search expansions by biasing synthesis planning towards expert goals on multiple new benchmarks. DESP can make use of existing one-step retrosynthesis models, and we anticipate its performance to scale as these one-step model capabilities improve.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

↑