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arXiv 2406.09094q-bio.PE
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精化漂变屏障假说:隐性基因数量的作用与非均匀的Muller棘轮

Refining the drift barrier hypothesis: a role of recessive gene count and an inhomogeneous Muller`s ratchet

Luis A. La Rocca, Konrad Gerischer, Anton Bovier, Peter M. Krawitz

AI总结:

本研究基于Wright-Fisher模型揭示了隐性基因数量对突变负荷的影响,证实了漂变屏障假说,并强调了重组在防止种群崩溃和稳定基因库中的关键作用。

摘要:

漂变屏障假说指出,随机遗传漂变限制了自然选择下表型的精细优化。前人已在理论上研究了有效种群规模和全基因组有害突变率的影响,并观察到许多物种的突变率与基因组大小之间存在反比关系。然而,基因组架构的一个重要特征——隐性基因数量的影响仍属未知。在Wright-Fisher模型中,我们研究了随着N个完全隐性且致死的疾病基因数量增加而带来的突变负荷。二倍体个体用表示野生型和突变等位基因的二元$2 \ imes N$矩阵表示。针对特定情况得到的解析结果,辅以在基因数量、突变率和重组率的广泛参数范围内的模拟,共同支持了研究结论。模拟揭示了向更高突变负荷和患病率的转变,这种转变发生在少数几代内,并与野生型单倍型(最小负荷类)的灭绝相关联。这种亚稳态,即伴随间歇性转变的准平衡阶段,持续超过$100\,000$代。漂变屏障假说因高突变负荷导致种群崩溃而得到证实。模拟表明,在代表人类等复杂多细胞生物的基因组架构和种群规模下,当突变率高于每代0.02个致死当量时,会出现相互排斥的单倍型。在此类系统中,重组被证明至关重要,它能防止种群崩溃并将突变负荷维持在10以下。本研究推进了我们对基因库稳定性的理解,特别是隐性障碍数量的作用。研究提供了对Muller棘轮动力学的见解,并证明了重组在抑制突变负荷和稳定基因库方面的关键作用。

英文摘要:

The drift-barrier hypothesis states that random genetic drift constrains the refinement of a phenotype under natural selection. The influence of effective population size and the genome-wide deleterious mutation rate were studied theoretically, and an inverse relationship between mutation rate and genome size has been observed for many species. However, the effect of the recessive gene count, an important feature of the genomic architecture, is unknown. In a Wright-Fisher model, we studied the mutation burden for a growing number of N completely recessive and lethal disease genes. Diploid individuals are represented with a binary $2 \times N$ matrix denoting wild-type and mutated alleles. Analytic results for specific cases were complemented by simulations across a broad parameter regime for gene count, mutation and recombination rates. Simulations revealed transitions to higher mutation burden and prevalence within a few generations that were linked to the extinction of the wild-type haplotype (least-loaded class). This metastability, that is, phases of quasi-equilibrium with intermittent transitions, persists over $100\,000$ generations. The drift-barrier hypothesis is confirmed by a high mutation burden resulting in population collapse. Simulations showed the emergence of mutually exclusive haplotypes for a mutation rate above 0.02 lethal equivalents per generation for a genomic architecture and population size representing complex multicellular organisms such as humans. In such systems, recombination proves pivotal, preventing population collapse and maintaining a mutation burden below 10. This study advances our understanding of gene pool stability, and particularly the role of the number of recessive disorders. Insights into Muller`s ratchet dynamics are provided, and the essential role of recombination in curbing mutation burden and stabilizing the gene pool is demonstrated.

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