Accurate segmentation of the fetal brain from Magnetic Resonance Image (MRI) is important for prenatal assessment of fetal development. Although deep learning has shown the potential to achieve this task, it requires a large fine annotated dataset that is difficult to collect. To address this issue, weakly-supervised segmentation methods with image-level labels have gained attention, which are commonly based on class activation maps from a classification network trained with image tags. However, most of these methods suffer from incomplete activation regions, due to the low-resolution localization without detailed boundary cues. To this end, we propose a novel weakly-supervised method with image-level labels based on semantic features and context information exploration. We first propose an Uncertainty-weighted Multi-resolution Class Activation Map (UM-CAM) to generate high-quality pixel-level supervision. Then, we design a Geodesic distance-based Seed Expansion (GSE) method to provide context information for rectifying the ambiguous boundaries of UM-CAM. Extensive experiments on a fetal brain dataset show that our UM-CAM can provide more accurate activation regions with fewer false positive regions than existing CAM variants, and our proposed method outperforms state-of-the-art weakly-supervised methods with image-level labels.
Boston Children's Hospital(波士顿儿童医院);Harvard Medical School(哈佛医学院);Northeastern University(东北大学)
Brain segmentation is a fundamental first step in neuroimage analysis. In the case of fetal MRI, it is particularly challenging and important due to the arbitrary orientation of the fetus, organs that surround the fetal head, and intermittent fetal motion. Several promising methods have been proposed but are limited in their performance in challenging cases and in real-time segmentation. We aimed to develop a fully automatic segmentation method that independently segments sections of the fetal brain in 2D fetal MRI slices in real-time. To this end, we developed and evaluated a deep fully convo…
The Hebrew University of Jerusalem(耶路撒冷希伯来大学);Sagol Brain Institute, Tel Aviv Sourasky Medical Center(特拉维夫苏拉斯基医疗中心萨戈尔脑研究所);Tel Aviv University(特拉维夫大学);Tel Aviv Sourasky Medical Center(特拉维夫苏拉斯基医疗中心);University of Ottawa(渥太华大学);Children's Hospital of Eastern Ontario(东安大略儿童医院);Shaare Zedek Medical Center(沙雷泽德克医疗中心)
Timely, accurate and reliable assessment of fetal brain development is essential to reduce short and long-term risks to fetus and mother. Fetal MRI is increasingly used for fetal brain assessment. Three key biometric linear measurements important for fetal brain evaluation are Cerebral Biparietal Diameter (CBD), Bone Biparietal Diameter (BBD), and Trans-Cerebellum Diameter (TCD), obtained manually by expert radiologists on reference slices, which is time consuming and prone to human error. The aim of this study was to develop a fully automatic method computing the CBD, BBD and TCD measurements…
University of Zurich(苏黎世大学);ETH Zurich(苏黎世联邦理工学院);Lausanne University Hospital(洛桑大学医院);University of Lausanne(洛桑大学);Technical University of Munich(慕尼黑工业大学);Brain Research Institute, University of Zurich(苏黎世大学脑研究所);University of Debrecen(德布勒森大学)
It is critical to quantitatively analyse the developing human fetal brain in order to fully understand neurodevelopment in both normal fetuses and those with congenital disorders. To facilitate this analysis, automatic multi-tissue fetal brain segmentation algorithms are needed, which in turn requires open databases of segmented fetal brains. Here we introduce a publicly available database of 50 manually segmented pathological and non-pathological fetal magnetic resonance brain volume reconstructions across a range of gestational ages (20 to 33 weeks) into 7 different tissue categories (extern…
MIT(麻省理工学院);Boston Children’s Hospital(波士顿儿童医院);Harvard Medical School(哈佛医学院)
Fetal brain MRI is useful for diagnosing brain abnormalities but is challenged by fetal motion. The current protocol for T2-weighted fetal brain MRI is not robust to motion so image volumes are degraded by inter- and intra- slice motion artifacts. Besides, manual annotation for fetal MR image quality assessment are usually time-consuming. Therefore, in this work, a semi-supervised deep learning method that detects slices with artifacts during the brain volume scan is proposed. Our method is based on the mean teacher model, where we not only enforce consistency between student and teacher model…
Robustness and Diagnostic Performance of Super-Resolution Fetal Brain MRI
Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia(卢布尔雅那大学医学学院);University Medical Centre Ljubljana, Ljubljana, Slovenia(卢布尔雅那大学医学中心);Faculty of Electrical Engineering, University of Ljubljana, Ljubljana, Slovenia(卢布尔雅那大学电气工程学院)
Stanford University(斯坦福大学);Philips Healthcare North America(北美飞利浦医疗)
Fetal brain imaging is a cornerstone of prenatal screening and early diagnosis of congenital anomalies. Knowledge of fetal gestational age is the key to the accurate assessment of brain development. This study develops an attention-based deep learning model to predict gestational age of the fetal brain. The proposed model is an end-to-end framework that combines key insights from multi-view MRI including axial, coronal, and sagittal views. The model also uses age-activated weakly-supervised attention maps to enable rotation-invariant localization of the fetal brain among background noise. We e…
Zhejiang University(浙江大学);Shandong Medical Imaging Research Institute(山东医学影像学研究所);Cheeloo College of Medicine, Shandong University(山东大学齐鲁医学院);Shanghai Jiao Tong University(上海交通大学)
Multi-slice magnetic resonance images of the fetal brain are usually contaminated by severe and arbitrary fetal and maternal motion. Hence, stable and robust motion correction is necessary to reconstruct high-resolution 3D fetal brain volume for clinical diagnosis and quantitative analysis. However, the conventional registration-based correction has a limited capture range and is insufficient for detecting relatively large motions. Here, we present a novel Affinity Fusion-based Framework for Iteratively Random Motion (AFFIRM) correction of the multi-slice fetal brain MRI. It learns the sequent…
Synthetic magnetic resonance images for domain adaptation: Application to fetal brain tissue segmentation
Lausanne University Hospital (CHUV)(洛桑大学医院(CHUV));University of Lausanne (UNIL)(洛桑大学(UNIL));CIBM Center for Biomedical Imaging(CIBM生物医学成像中心);University Children’s Hospital Zurich(苏黎世大学儿童医院);University of Zurich(苏黎世大学);Neuroscience Center Zurich(苏黎世神经科学中心)
Northeastern University(东北大学);Boston Children’s Hospital(波士顿儿童医院);Harvard Medical School(哈佛医学院)
Fetal brain segmentation is an important first step for slice-level motion correction and slice-to-volume reconstruction in fetal MRI. Fast and accurate segmentation of the fetal brain on fetal MRI is required to achieve real-time fetal head pose estimation and motion tracking for slice re-acquisition and steering. To address this critical unmet need, in this work we analyzed the speed-accuracy performance of a variety of deep neural network models, and devised a symbolically small convolutional neural network that combines spatial details at high resolution with context features extracted at …
Imperial College London(伦敦帝国学院);King’s College London(伦敦国王学院);FAU Erlangen-Nürnberg(埃尔朗根-纽伦堡大学);Technical University of Munich(慕尼黑工业大学)
Fetal Magnetic Resonance Imaging (MRI) is used in prenatal diagnosis and to assess early brain development. Accurate segmentation of the different brain tissues is a vital step in several brain analysis tasks, such as cortical surface reconstruction and tissue thickness measurements. Fetal MRI scans, however, are prone to motion artifacts that can affect the correctness of both manual and automatic segmentation techniques. In this paper, we propose a novel network structure that can simultaneously generate conditional atlases and predict brain tissue segmentation, called CAS-Net. The condition…
Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford(牛津大学工程科学系生物医学工程研究所);Nuffield Department of Obstetrics and Gynaecology, John Radcliffe Hospital, University of Oxford(牛津大学约翰拉德克利夫医院妇产科);Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford(牛津大学李兆基健康信息与发现中心大数据研究所)
To improve the performance of most neuroimiage analysis pipelines, brain extraction is used as a fundamental first step in the image processing. But in the case of fetal brain development, there is a need for a reliable US-specific tool. In this work we propose a fully automated 3D CNN approach to fetal brain extraction from 3D US clinical volumes with minimal preprocessing. Our method accurately and reliably extracts the brain regardless of the large data variation inherent in this imaging modality. It also performs consistently throughout a gestational age range between 14 and 31 weeks, rega…
SpaER: Learning Spatio-temporal Equivariant Representations for Fetal Brain Motion Tracking
Boston Children’s Hospital(波士顿儿童医院);Harvard Medical School(哈佛医学院);Northeastern University(东北大学);Massachusetts Institute of Technology(麻省理工学院);University of California Irvine(加州大学欧文分校)
Enhancing Generalized Fetal Brain MRI Segmentation using A Cascade Network with Depth-wise Separable Convolution and Attention Mechanism
Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University(复旦大学类脑智能科学与技术研究院);MOE Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence(教育部计算神经科学与类脑智能重点实验室);MOE Frontiers Center for Brain Science(教育部脑科学前沿中心)
University Medical Center Utrecht(乌得勒支大学医学中心);Wilhelmina Children’s Hospital(威廉明娜儿童医院);Utrecht University(乌得勒支大学)
MR images of fetuses allow clinicians to detect brain abnormalities in an early stage of development. The cornerstone of volumetric and morphologic analysis in fetal MRI is segmentation of the fetal brain into different tissue classes. Manual segmentation is cumbersome and time consuming, hence automatic segmentation could substantially simplify the procedure. However, automatic brain tissue segmentation in these scans is challenging owing to artifacts including intensity inhomogeneity, caused in particular by spontaneous fetal movements during the scan. Unlike methods that estimate the bias f…
Unsupervised Segmentation of Fetal Brain MRI using Deep Learning Cascaded Registration
Universitat Pompeu Fabra(庞培法布拉大学);BCNatal;Institución Catalana de Investigación y Estudios Avanzados (ICREA)(加泰罗尼亚高级研究与发展研究院);Centre for Biomedical Research on Rare Diseases (CIBERER)(罕见疾病生物医学研究中心);European Commission, Joint Research Centre (JRC)(欧盟委员会联合研究中心)
Conditional Fetal Brain Atlas Learning for Automatic Tissue Segmentation
Computational Imaging Research Lab(计算成像研究实验室);Department of Biomedical Imaging and Image-guided Therapy(生物医学成像与影像引导治疗部门);Medical University of Vienna(维也纳医科大学);Comprehensive Center for Artificial Intelligence in Medicine(医学人工智能综合中心);Division of General Radiology(普通放射学分会);Medical University Vienna(维也纳医科大学);Christian Doppler Laboratory for Mathematical Modelling and Simulation of Next-Generation Medical Ultrasound Devices(基督教·多普勒医学影像建模与模拟实验室)
Imperial College London(帝国理工学院);King’s College London(伦敦国王学院)
Standard scan plane detection in fetal brain ultrasound (US) forms a crucial step in the assessment of fetal development. In clinical settings, this is done by manually manoeuvring a 2D probe to the desired scan plane. With the advent of 3D US, the entire fetal brain volume containing these standard planes can be easily acquired. However, manual standard plane identification in 3D volume is labour-intensive and requires expert knowledge of fetal anatomy. We propose a new Iterative Transformation Network (ITN) for the automatic detection of standard planes in 3D volumes. ITN uses a convolutiona…
Improving cross-domain brain tissue segmentation in fetal MRI with synthetic data
Lausanne University Hospital(洛桑大学医院);University of Lausanne (UNIL)(洛桑大学);CIBM Center for Biomedical Imaging(CIBM生物医学成像中心);King’s College London(伦敦国王学院);FAU Erlangen-Nuremberg(埃尔朗根-纽伦堡大学)
Tissue Segmentation of Thick-Slice Fetal Brain MR Scans with Guidance from High-Quality Isotropic Volumes
ShanghaiTech University(上海科技大学);Fudan University(复旦大学);Obstetrics and Gynecology Hospital of Fudan University(复旦大学附属妇产科医院);Northwestern Polytechnical University(西北工业大学);Shanghai United Imaging Intelligence company Ltd.(上海联影智能科技有限公司);Shanghai Clinical Research and Trial Center(上海临床研究中心)
Brain Center Rudolf Magnus, University Medical Center Utrecht(乌得勒支大学医学中心鲁道夫·马格努斯脑中心);Medical Image Analysis Group, Department of Biomedical Engineering, Eindhoven University of Technology(埃因霍温理工大学);Image Sciences Institute, University Medical Center Utrecht(乌得勒支大学医学中心影像科学研究所);Department of Obstetrics, University Medical Center Utrecht(乌得勒支大学医学中心)
MR images of the fetus allow non-invasive analysis of the fetal brain. Quantitative analysis of fetal brain development requires automatic brain tissue segmentation that is typically preceded by segmentation of the intracranial volume (ICV). This is challenging because fetal MR images visualize the whole moving fetus and in addition partially visualize the maternal body. This paper presents an automatic method for segmentation of the ICV in fetal MR images. The method employs a multi-scale convolutional neural network in 2D slices to enable learning spatial information from larger context as w…
University of Electronic Science and Technology of China(电子科技大学);King’s College London(伦敦国王学院);University Hospitals KU Leuven(鲁汶大学附属医院);University College London(伦敦大学学院);SenseTime Research(商汤科技研究院)
Segmentation of the fetal brain from stacks of motion-corrupted fetal MRI slices is important for motion correction and high-resolution volume reconstruction. Although Convolutional Neural Networks (CNNs) have been widely used for automatic segmentation of the fetal brain, their results may still benefit from interactive refinement for challenging slices. To improve the efficiency of interactive refinement process, we propose an Uncertainty-Guided Interactive Refinement (UGIR) framework. We first propose a grouped convolution-based CNN to obtain multiple automatic segmentation predictions with…
An automatic pipeline for atlas-based fetal and neonatal brain segmentation and analysis
BCN MedTech;Universitat Pompeu Fabra(庞培法布拉大学);Hospital Clínic(临床医院);Hospital Sant Joan de Déu(圣胡安·德杜医院);University of Barcelona(巴塞罗那大学);McConnell Brain Imaging Centre(麦康奈尔脑成像中心);Montreal Neurological Institute and Hospital(蒙特利尔神经学研究所及医院);McGill University(麦吉尔大学);Centre for Biomedical Research on Rare Diseases (CIBERER)(罕见病生物医学研究中心(CIBERER))
Detailed delineation of the fetal brain in diffusion MRI via multi-task learning
Harvard Medical School(哈佛医学院);Elmhurst Hospital Center(埃尔姆赫斯特医院中心);Icahn School of Medicine at Mount Sinai(西奈山伊坎医学院);Massachusetts General Hospital(麻省总医院);University of California Irvine(加州大学欧文分校)
MIT(麻省理工学院);Boston Children’s Hospital(波士顿儿童医院);Harvard Medical School(哈佛医学院);University College London(伦敦大学学院);Massachusetts General Hospital(麻省总医院)
Volumetric reconstruction of fetal brains from multiple stacks of MR slices, acquired in the presence of almost unpredictable and often severe subject motion, is a challenging task that is highly sensitive to the initialization of slice-to-volume transformations. We propose a novel slice-to-volume registration method using Transformers trained on synthetically transformed data, which model multiple stacks of MR slices as a sequence. With the attention mechanism, our model automatically detects the relevance between slices and predicts the transformation of one slice using information from othe…
Origin Health India(印度Origin Health公司);Bangalore Fetal Medicine Center(班加罗尔胎儿医学中心);Prime Imaging and Prenatal Diagnostics(Prime影像与产前诊断中心);Kasturba Medical College(卡斯图尔巴医学院);Manipal Academy of Higher Education(马尼帕尔高等教育学院);Origin Health(Origin Health公司)
Multiple studies have demonstrated that obtaining standardized fetal brain biometry from mid-trimester ultrasonography (USG) examination is key for the reliable assessment of fetal neurodevelopment and the screening of central nervous system (CNS) anomalies. Obtaining these measurements is highly subjective, expertise-driven, and requires years of training experience, limiting quality prenatal care for all pregnant mothers. In this study, we propose a deep learning (DL) approach to compute 3 key fetal brain biometry from the 2D USG images of the transcerebellar plane (TC) through the accurate …
USFetal: Tools for Fetal Brain Ultrasound Compounding
A. I. Virtanen Institute for Molecular Sciences, Faculty of Health Sciences, University of Eastern Finland(A.I.维塔内恩分子科学研究所,健康科学学院,东芬兰大学);Munich Center for Machine Learning (MCML) at the Technical University of Munich(慕尼黑技术大学机器学习中心(MCML));Department of Radiology, Massachusetts General Hospital(麻省总医院放射科);Harvard Medical School and Boston Children’s Hospital(哈佛医学院和波士顿儿童医院)
Physics-Informed Joint Multi-TE Super-Resolution with Implicit Neural Representation for Robust Fetal T2 Mapping
Department of Radiology, Lausanne University Hospital(放射科部门,洛桑大学医院);University of Lausanne(洛桑大学);CIBM Center for Biomedical Imaging(生物医学成像中心);Chair for AI in Healthcare and Medicine(医疗与健康人工智能主席职位);Technical University of Munich (TUM)(慕尼黑技术大学);TUM University Hospital(慕尼黑技术大学医院);Department of Computing, Imperial College London(计算部门,伦敦帝国理工学院);Munich Center for Machine Learning (MCML)(慕尼黑机器学习中心);Biomedical Engineering Department(生物医学工程部门);School of Biomedical Engineering and Imaging Sciences, King’s College London(生物医学工程与成像科学学院,伦敦国王学院);Institut de Neurosciences de la Timone(蒂莫尼神经科学研究所);IMT Atlantique(大西洋研究所);Smart Imaging Lab, Friedrich-Alexander University Erlangen(智能成像实验室,埃朗根-纽伦堡大学)
Automated Fetal Brain MRI Biometry in Healthy and Pathological Cases
Faculty of Medicine, University of Ljubljana(卢布尔雅那大学医学院);University Medical Centre Ljubljana(卢布尔雅那大学医学中心);Faculty of Electrical Engineering, University of Ljubljana(卢布尔雅那大学电气工程学院)
Fetal cortical plate segmentation is essential in quantitative analysis of fetal brain maturation and cortical folding. Manual segmentation of the cortical plate, or manual refinement of automatic segmentations is tedious and time-consuming. Automatic segmentation of the cortical plate, on the other hand, is challenged by the relatively low resolution of the reconstructed fetal brain MRI scans compared to the thin structure of the cortical plate, partial voluming, and the wide range of variations in the morphology of the cortical plate as the brain matures during gestation. To reduce the burde…
Universitair Ziekenhuis Leuven(鲁汶大学医院);Medical University of Vienna(维也纳医科大学);King’s College London(伦敦国王学院)
In fetal Magnetic Resonance Imaging, Super Resolution Reconstruction (SRR) algorithms are becoming popular tools to obtain high-resolution 3D volume reconstructions from low-resolution stacks of 2D slices, acquired at different orientations. To be effective, these algorithms often require accurate segmentation of the region of interest, such as the fetal brain in suspected pathological cases. In the case of Spina Bifida, Ebner, Wang et al. (NeuroImage, 2020) combined their SRR algorithm with a 2-step segmentation pipeline (2D localisation followed by a 2D segmentation network). However, if the…
The Hebrew University of Jerusalem(耶路撒冷希伯来大学);Sagol Brain Institute, Tel Aviv Sourasky Medical Center(特拉维夫苏拉斯基医疗中心萨戈尔脑研究所);Tel Aviv University(特拉维夫大学)
Volumetric measurements of fetal structures in MRI are time consuming and error prone and therefore require automatic segmentation. Placenta segmentation and accurate fetal brain segmentation for gyrification assessment are particularly challenging because of the placenta fuzzy boundaries and the fetal brain cortex complex foldings. In this paper, we study the use of the Contour Dice loss for both problems and compare it to other boundary losses and to the combined Dice and Cross-Entropy loss. The loss is computed efficiently for each slice via erosion, dilation and XOR operators. We describe …
Northeastern University(东北大学);Harvard Medical School(哈佛医学院)
Brain extraction or whole brain segmentation is an important first step in many of the neuroimage analysis pipelines. The accuracy and robustness of brain extraction, therefore, is crucial for the accuracy of the entire brain analysis process. With the aim of designing a learning-based, geometry-independent and registration-free brain extraction tool in this study, we present a technique based on an auto-context convolutional neural network (CNN), in which intrinsic local and global image features are learned through 2D patches of different window sizes. In this architecture three parallel 2D …
Cross-Modal Ultrasound-MRI Learning for Fetal Brain Ventricular Volumetry and Abnormality Screening
Harvard Medical School(哈佛医学院);Shenzhen University(深圳大学);Centre for Artificial Intelligence and Robotics, Hong Kong Institute of Science & Innovation, Chinese Academy of Sciences(中国科学院香港创新研究院人工智能与机器人中心);School of Artificial Intelligence, Shenzhen University(深圳大学人工智能学院);School of Biomedical Engineering and Informatics, Nanjing Medical University(南京医科大学生物医学工程与信息学院)
University of Oxford(牛津大学);Amazon(亚马逊);Kings College London(伦敦国王学院)
This paper presents a novel approach to automatic fetal brain biometry motivated by needs in low- and medium- income countries. Specifically, we leverage high-end (HE) ultrasound images to build a biometry solution for low-cost (LC) point-of-care ultrasound images. We propose a novel unsupervised domain adaptation approach to train deep models to be invariant to significant image distribution shift between the image types. Our proposed method, which employs a Dual Adversarial Calibration (DAC) framework, consists of adversarial pathways which enforce model invariance to; i) adversarial perturb…
Boston Children’s Hospital(波士顿儿童医院);Harvard Medical School(哈佛医学院)
Automatic fetal brain tissue segmentation can enhance the quantitative assessment of brain development at this critical stage. Deep learning methods represent the state of the art in medical image segmentation and have also achieved impressive results in brain segmentation. However, effective training of a deep learning model to perform this task requires a large number of training images to represent the rapid development of the transient fetal brain structures. On the other hand, manual multi-label segmentation of a large number of 3D images is prohibitive. To address this challenge, we segm…
AtlasSeg: Atlas Prior Guided Dual-U-Net for Cortical Segmentation in Fetal Brain MRI
College of Biomedical Engineering & Instrument Science, Zhejiang University(浙江大学生物医学工程与仪器科学学院);Beijing Hospital, National Center of Gerontology, Institute of Geriatric Medicine, Chinese Academy of Medical Sciences(中国医学科学院北京医院国家老年医学中心老年医学研究所);Shandong Provincial Hospital Affiliated to Shandong First Medical University(山东第一医科大学附属山东省立医院);State Key Lab of CAD&CG, Zhejiang University(浙江大学CAD&CG国家重点实验室)
University Hospitals Leuven(鲁汶大学医院);University Hospitals Tanta(坦塔大学医院);University College London(伦敦大学学院)
Deep neural networks have increased the accuracy of automatic segmentation, however, their accuracy depends on the availability of a large number of fully segmented images. Methods to train deep neural networks using images for which some, but not all, regions of interest are segmented are necessary to make better use of partially annotated datasets. In this paper, we propose the first axiomatic definition of label-set loss functions that are the loss functions that can handle partially segmented images. We prove that there is one and only one method to convert a classical loss function for fu…
Evaluating Synthetic Data Generation for Domain Generalization in Fetal Brain MRI Segmentation
Department of Radiology, Lausanne University Hospital and University of Lausanne (UNIL)(拉沃斯大学医院放射科和洛桑大学(UNIL));CIBM Center for Biomedical Imaging(生物医学成像中心);Institute for Information Processing, Leibniz University Hannover(汉诺威莱比锡大学信息处理研究所);Department of Biomedical Engineering, School of Biomedical Engineering & Imaging Sciences, King’s College London(伦敦国王学院生物医学工程系);Department of Biomedical Imaging and Image-Guided Therapy, Division of Neuroradiology and Musculoskeletal Radiology, Medical University of Vienna(维也纳医学大学生物医学成像与影像引导治疗系);Department of Biomedical Imaging and Image-guided Therapy, Computational Imaging Research Lab (CIR), Medical University of Vienna(维也纳医学大学生物医学成像与影像引导治疗系,计算成像研究实验室(CIR));Christian Doppler Laboratory for Mathematical Modelling and Simulation of Next-Generation Medical Ultrasound Devices, Medical University of Vienna(维也纳医学大学下一代医学超声设备数学建模与仿真克里斯蒂安多普勒实验室);Comprehensive Center for Artificial Intelligence in Medicine, Medical University of Vienna(维也纳医学大学人工智能在医学中的综合中心);Division of Neuroradiology and Musculoskeletal Radiology, Department of Biomedical Imaging and Image–guided Therapy, Medical University of Vienna(维也纳医学大学生物医学成像与影像引导治疗系,神经放射学和骨科放射学系)
Department of Radiology, Massachusetts General Hospital(麻省总医院放射科);Radiology, Perelman School of Medicine, University of Pennsylvania(宾夕法尼亚大学佩雷尔曼医学院放射科)
In fetal-brain MRI, head-pose changes between prescription and acquisition present a challenge to obtaining the standard sagittal, coronal and axial views essential to clinical assessment. As motion limits acquisitions to thick slices that preclude retrospective resampling, technologists repeat ~55-second stack-of-slices scans (HASTE) with incrementally reoriented field of view numerous times, deducing the head pose from previous stacks. To address this inefficient workflow, we propose a robust head-pose detection algorithm using full-uterus scout scans (EPI) which take ~5 seconds to acquire. …