A Network Theory Investigation into the Altered Resting State Functional Connectivity in Attention-Deficit Hyperactivity Disorder
University of Rajshahi（拉杰沙希大学）；Hajee Mohammad Danesh Science and Technology University（哈吉·穆罕默德·达内什科技大学）；Deakin University（迪肯大学）；COMSATS University Islamabad（伊斯兰堡COMSATS大学）；Charles Sturt University（查尔斯特大学）
In the last two decades, functional magnetic resonance imaging (fMRI) has emerged as one of the most effective technologies in clinical research of the human brain. fMRI allows researchers to study healthy and pathological brains while they perform various neuropsychological functions. Beyond task-related activations, the human brain has some intrinsic activity at a task-negative (resting) state that surprisingly consumes a lot of energy to support communication among neurons. Recent neuroimaging research has also seen an increase in modeling and analyzing brain activity in terms of a graph or network. Since graph models facilitate a systems-theoretic explanation of the brain, they have become increasingly relevant with advances in network science and the popularization of complex systems theory. The purpose of this study is to look into the abnormalities in resting brain functions in adults with Attention Deficit Hyperactivity Disorder (ADHD). The primary goal is to investigate resting-state functional connectivity (FC), which can be construed as a significant temporal coincidence in blood-oxygen-level dependent (BOLD) signals between functionally related brain regions in the absence of any stimulus or task. When compared to healthy controls, ADHD patients have lower average connectivity in the Supramarginal Gyrus and Superior Parietal Lobule, but higher connectivity in the Lateral Occipital Cortex and Inferior Temporal Gyrus. We also hypothesize that the network organization of default mode and dorsal attention regions is abnormal in ADHD patients.
To uncover the underlying mechanisms of mental disorders such as attention deficit hyperactivity disorder (ADHD) for improving both early diagnosis and therapy, it is increasingly recognized that we need a better understanding of how the brain's functional connections are altered. A new brain wide association study (BWAS) has been developed and used to investigate functional connectivity changes in the brains of patients suffering from ADHD using resting state fMRI data. To reliably find out the most significantly altered functional connectivity links and associate them with ADHD, a meta-analy…
Attention-deficit/hyperactivity disorder (ADHD) is increasingly being diagnosed in both children and adults, but the neural mechanisms that underlie its distinct symptoms and whether children and adults share the same mechanism remain poorly understood. Here, we used a nested-spectral partition (NSP) approach to study the resting-state brain functional networks of ADHD patients (n=97) and healthy controls (HCs, n=97) across the lifespan (7-50 years). Compared to the linear lifespan associations of brain functional segregation and integration with age in HCs, ADHD patients have a quadratic asso…
Attention Deficit/Hyperactivity Disorder (ADHD) is one of the most common neurodevelopmental disorders in children and is characterised by inattention, impulsiveness and hyperactivity. While several studies have analysed the static functional connectivity in the resting-state functional MRI (rs-fMRI) of ADHD patients, detailed investigations are required to characterize the connectivity dynamics in the brain. In an attempt to establish a link between attention instability and the dynamic properties of Functional Connectivity (FC), we investigated the differences in temporal variability of FC b…
What makes a network complex, in addition to its size, is the interconnected interactions between elements, disruption of which inevitably results in dysfunction. Likewise, the brain networks' complexity arises from interactions beyond pair connections, as it is simplistic to assume that in complex networks state of a link is independently determined only according to its two constituting nodes. This is particularly of note in genetically complex brain impairments, such as the autism spectrum disorder (ASD), which has a surprising heterogeneity in manifestations with no clear-cut neuropatholog…
Network neuroscience shed some light on the functional and structural modifications occurring to the brain associated with the phenomenology of schizophrenia. In particular, resting-state functional networks have helped our understanding of the illness by highlighting the global and local alterations within the cerebral organization. We investigated the robustness of the brain functional architecture in forty-four medicated schizophrenic patients and forty healthy comparators through an advanced network analysis of resting-state functional magnetic resonance imaging data. The networks in patie…
Discovering robust biomarkers of psychiatric disorders from resting-state functional MRI via graph neural networks: A systematic review
College of Computing and Data Science, Nanyang Technological University（南洋理工大学计算与数据科学学院）；Department of Computer Science and Engineering, Indian Institute of Technology（印度理工学院计算机科学与工程系）
Recently we developed a novel method for assessing the hierarchical modularity of functional brain networks - the probability associated community estimation(PACE). The PACE algorithm is unique in that it permits a dual formulation, thus yielding equivalent connectome modular structure regardless of whether considering positive or negative edges. This method was rigorously validated using F1000 and HCP data. We detected novel sex differences in resting-state connectivity that were not previously reported. This current study more thoroughly examined sex differences as a function of age and thei…
This paper compares three feature representation techniques used to represent resting state functional magnetic resonance (fMRI) scans. The proposed models of feature representation consider the time averaged fMRI scans as raw representation of image data. The effectiveness of the representation is evaluated by using these features for classification of Attention Deficit Hyperactivity Disorder (ADHD) patients from healthy controls. The dimensionality reduction methods used for feature representation are maximum-variance unfolding, locally linear embedding and auto-encoders. The classifiers tes…
Differences in Neurovascular Coupling in Patients with Major Depressive Disorder: Evidence from Simultaneous Resting-State EEG-fNIRS
Beijing Huilongguan Hospital, Peking University Huilongguan Clinical Medical School（北京回龙观医院，北京大学回龙观临床医学院）；Tsinghua Laboratory of Brain and Intelligence（清华大学脑与智能实验室）；AI Innovation Center, Tsinghua Pearl River Delta Research Institute（清华大学珠三角研究院人工智能创新中心）；School of Biomedical Engineering, Tsinghua university（清华大学 biomedical 工程学院）；Department of Psychology, School of Humanities and Social Sciences, Beijing Forestry University（北京林业大学人文社会科学学院心理学系）；Xinya College, Tsinghua University（清华大学新雅书院）
This paper applies a hidden Markov model to the problem of Attention Deficit Hyperactivity Disorder (ADHD) diagnosis from resting-state functional Magnetic Resonance Image (fMRI) scans of subjects. The proposed model considers the temporal evolution of fMRI voxel activations in the cortex, cingulate gyrus, and thalamus regions of the brain in order to make a diagnosis. Four feature dimen- sionality reduction methods are applied to the fMRI scan: voxel means, voxel weighted means, principal components analysis, and kernel principal components analysis. Using principal components analysis and ke…
Circadian rhythms synchronize a variety of physiological processes ranging from neural activity and hormone secretion to sleep cycles and feeding habits. Despite significant diurnal variation, time-of-day (TOD) is rarely recorded or analyzed in human brain research. Moreover, sleep-wake patterns, diurnal preferences, and daytime alertness vary across individuals, known as sleep chronotypes. Here, we performed graph-theory network analysis on resting-state functional MRI (rs-fMRI) data to explore topological differences in whole-brain functional networks between morning and evening sessions (TO…
Columbia University（哥伦比亚大学）；Stanford University（斯坦福大学）
We propose a hierarchical Bayesian recurrent state space model for modeling switching network connectivity in resting state fMRI data. Our model allows us to uncover shared network patterns across disease conditions. We evaluate our method on the ADNI2 dataset by inferring latent state patterns corresponding to altered neural circuits in individuals with Mild Cognitive Impairment (MCI). In addition to states shared across healthy and individuals with MCI, we discover latent states that are predominantly observed in individuals with MCI. Our model outperforms current state of the art deep learn…
Obsessive-compulsive disorder (OCD) is a common psychiatric disorder with a lifetime prevalence of 2-3 percent. Recently, brain activity in the resting state is gathering attention as a new means of exploring altered functional connectivity in psychiatric disorders. Although previous resting-state functional magnetic resonance imaging studies investigated neurobiological abnormalities of patients with OCD, there are concerns that should be addressed. One concern is the validity of the hypothesis employed. Most studies used seed-based analysis of the fronto-striatal circuit, despite the potenti…
Human learning is a complex process in which future behavior is altered via the reorganization of brain activity and connectivity. It remains unknown whether activity and connectivity differentially reorganize during learning, and, if so, how that differential reorganization tracks stages of learning across distinct brain areas. Here, we address this gap in knowledge by measuring brain activity and functional connectivity in a longitudinal fMRI experiment in which healthy adult human participants learn the values of novel objects over the course of four days. An increasing similarity in activi…
The entropic brain hypothesis holds that the key facts concerning psychedelics are partially explained in terms of increased entropy of the brain's functional connectivity. Ayahuasca is a psychedelic beverage of Amazonian indigenous origin with legal status in Brazil in religious and scientific settings. In this context, we use tools and concepts from the theory of complex networks to analyze resting state fMRI data of the brains of human subjects under two distinct conditions: (i) under ordinary waking state and (ii) in an altered state of consciousness induced by ingestion of Ayahuasca. We r…
Emerging brain network studies suggest that interactions between various distributed neuronal populations may be characterized by an organized complex topological structure. Many brain diseases are associated with altered topological patterns of brain connectivity. Therefore, a key inquiry of connectivity analysis is to identify network-level differentially expressed connections that have low false positive rates, sufficient statistical power, and high reproducibility. In this paper, we propose a novel statistical approach to fulfill this goal by leveraging the topological structure of differe…
Open problems abound in the theory of complex networks, which has found successful application to diverse fields of science. With the aim of further advancing the understanding of the brain's functional connectivity, we propose to evaluate a network metric which we term the geodesic entropy. This entropy, in a way that can be made precise, quantifies the Shannon entropy of the distance distribution to a specific node from all other nodes. Measurements of geodesic entropy allow for the characterization of the structural information of a network that takes into account the distinct role of each …
Severe traumatic brain injury can lead to disorders of consciousness (DOC) characterized by deficit in conscious awareness and cognitive impairment including coma, vegetative state, minimally consciousness, and lock-in syndrome. Of crucial importance is to find objective markers that can account for the large-scale disturbances of brain function to help the diagnosis and prognosis of DOC patients and eventually the prediction of the coma outcome. Following recent studies suggesting that the functional organization of brain networks can be altered in comatose patients, this work analyzes brain …
Massachusetts General Hospital（麻省总医院）；Harvard Medical School（哈佛医学院）；German Center for Neurodegenerative Diseases（德国神经退行性疾病中心）；University Hospital Bonn（波恩大学医院）；Johns Hopkins University（约翰斯·霍普金斯大学）；Istanbul Technical University（伊斯坦布尔理工大学）；University of Dundee（邓迪大学）；University of North Carolina at Greensboro（北卡罗来纳大学格林斯伯勒分校）；Kennedy Krieger Institute（肯尼迪·克里格研究所）；Johns Hopkins School of Medicine（约翰斯·霍普金斯医学院）
Large, open-source consortium datasets have spurred the development of new and increasingly powerful machine learning approaches in brain connectomics. However, one key question remains: are we capturing biologically relevant and generalizable information about the brain, or are we simply overfitting to the data? To answer this, we organized a scientific challenge, the Connectomics in NeuroImaging Transfer Learning Challenge (CNI-TLC), held in conjunction with MICCAI 2019. CNI-TLC included two classification tasks: (1) diagnosis of Attention-Deficit/Hyperactivity Disorder (ADHD) within a pre-a…
Early sensory deprivation such as blindness or deafness shapes brain development in multiple ways. While it is established that deprived brain areas start to be engaged in the processing of stimuli from the remaining modalities and in high-level cognitive tasks, some reports have also suggested the possibility of structural and functional changes in non-deprived brain areas. We compared resting-state functional network organization of the brain in early-deaf adults and hearing controls by examining global network segregation and integration. Relative to hearing controls, deaf adults exhibited …
Interpretable Information-Decomposed Brain Graph Learning for fMRI-based Disease Diagnosis
School of Mathematics and Statistics, Shandong University（山东大学数学与统计学院）；Data Science Institute, Shandong University（山东大学数据科学研究院）；Academy of Mathematics and Systems Science, University of Chinese Academy of Sciences（中国科学院大学数学与系统科学研究院）
Universiti Teknologi Malaysia（马来西亚理工大学）；King Abdullah University of Science and Technology（阿卜杜拉国王科技大学）
We exploit altered patterns in brain functional connectivity as features for automatic discriminative analysis of neuropsychiatric patients. Deep learning methods have been introduced to functional network classification only very recently for fMRI, and the proposed architectures essentially focused on a single type of connectivity measure. We propose a deep convolutional neural network (CNN) framework for classification of electroencephalogram (EEG)-derived brain connectome in schizophrenia (SZ). To capture complementary aspects of disrupted connectivity in SZ, we explore combination of vario…
The technology of functional Magnetic Resonance Imaging (fMRI) based on Blood Oxygen Level Dependent (BOLD) signal has been widely used in clinical treatments and brain function researches. The BOLD signal has to be preprocessed before being analyzed using either functional connectivity measurements or statistical methods. Current researches show that data preprocessing steps may influence the results of analysis, yet there is no consensus on preprocessing method. In this paper, an evaluation method is proposed for analyzing the preprocessing pipeline of resting state BOLD fMRI (rs-BOLD fMRI) …
The Disrupted in Schizophrenia Gene 1 (DISC1) plays a role in both neural signalling and development and is associated with schizophrenia, although its links to altered brain structure and function in this disorder are not fully established. Here we have used structural and functional MRI to investigate links with six DISC1 single nucleotide polymorphisms (SNPs). We employed a brain-wide association analysis (BWAS) together with a Jacknife internal validation approach in 46 schizophrenia patients and 24 matched healthy control subjects. Results from structural MRI showed significant associatio…
