We calculate the hydrodynamic force on a small spherical, unsteady squirmer moving with a time-dependent velocity in a fluid at rest, taking into account convective and unsteady fluid inertia effects in perturbation theory. Our results generalise those of Lovalenti and Brady (1993) from passive to active spherical particles. We find that convective inertia changes the history-contribution to the hydrodynamic force, as it does for passive particles. We determine how the hydrodynamic force depends on the swimming gait of the unsteady squirmer. Since swimming breaks the spherical symmetry of the problem, the force is not completely determined by the outer solution of the asymptotic matching problem, as it is for passive spheres. There are additional contributions due to the inhomogeneous solution of the inner problem. We also compute the disturbance flow, illustrating convective and unsteady effects when the particle experiences a sudden start followed by a sudden stop.
We present a study of the hydrodynamics of an active particle, a model squirmer, in an envi- ronment with a broken rotational symmetry: a nematic liquid crystal. By combining simulations with analytic calculations, we show that the hydrodynamic coupling between the squirmer flow field and liquid crystalline director can lead to re-orientation of the swimmers. The preferred orientation depends on the exact details of the squirmer flow field. In a steady state, pushers are shown to swim parallel with the nematic director while pullers swim perpendicular to the nematic director. This behaviour ar…
Many microorganisms take a chiral path while swimming in an ambient uid. In this paper, we study the combined behavior of two chiral swimmers using the well-known squirmer model taking into account chiral asymmetries. In contrast to the simple squirmer model, which has an axisymmetric distribution of slip velocity, the chiral squirmer has additional asymmetries in the surface slip, which contribute to both translations and rotations of the motion. As a result, swimming trajectories can become helical and chiral asymmetries arise in the ow patterns. We study the swimming trajectories of a pair …
Using lattice Boltzmann simulations we study the hydrodynamics of an active spherical particle near a no-slip wall. We develop a computational model for an active Janus particle, by considering different and independent mobilities on the two hemispheres and compare the behaviour to a standard squirmer model.We show that the topology of the far-field hydrodynamic nature of the active Janus particle is similar to the standard squirmer model, but in the near-field the hydrodynamics differ. In order to study how the near-field effects affect the interaction between the particle and a flat wall, we…
We study the collective motion of confined spherical microswimmers such as active colloids which we model by so-called squirmers. To simulate hydrodynamic flow fields including thermal noise, we use the method of multi-particle collision dynamics. We demonstrate that hydrodynamic near fields acting between squirmers as well as squirmers and bounding walls crucially determine their collective motion. In particular, with increasing density we observe a clear phase separation into a gas-like and cluster phase for neutral squirmers whereas strong pushers and pullers more gradually approach the hex…
The squirmer is a simple yet instructive model for microswimmers, which employs an effective slip velocity on the surface of a spherical swimmer to describe its self-propulsion. We solve the hydrodynamic flow problem with the lattice Boltzmann (LB) method, which is well-suited for time-dependent problems involving complex boundary conditions. Incorporating the squirmer into LB is relatively straight-forward, but requires an unexpectedly fine grid resolution to capture the physical flow fields and behaviors accurately. We demonstrate this using four basic hydrodynamic tests: Two for the far-fie…
We study, by means of an exact analytical solution, the motion of a spheroidal, axisymmetric squirmer in an unbounded fluid, as well as the low Reynolds number hydrodynamic flow associated to it. In contrast to the case of a spherical squirmer --- for which, e.g., the velocity of the squirmer and the magnitude of the stresslet associated with the flow induced by the squirmer are respectively determined by the amplitudes of the first two slip ("squirming") modes --- for the spheroidal squirmer each squirming mode either contributes to the velocity, or contributes to the stresslet. The results a…
We present a hydrodynamic study of a monolayer of squirmer model microswimmers confined to a boundary by strong gravity using the simulation method of multi-particle collision dynamics. The squirmers interact with each other via their self-generated hydrodynamic flow fields and thereby form a variety of fascinating dynamic states when density and squirmer type are varied. Weak pushers, neutral squirmers, and pullers have an upright orientation. With their flow fields they push neighbors away and thereby form a hydrodynamic Wigner fluid at lower densities. Furthermore, states of fluctuating cha…
The behaviour of microscopic swimmers has previously been explored near large scale confining geometries and in the presence of very small-scale surface roughness. Here we consider an intermediate case of how a simple microswimmer, the tangential spherical squirmer, behaves adjacent to singly- and doubly-periodic sinusoidal surface topographies that spatially oscillate with an amplitude that is an order of magnitude less than the swimmer size and wavelengths within an order of magnitude of this scale. The nearest neighbour regularised Stokeslet method is used for numerical explorations after v…
We perform hydrodynamic simulations using the method of multi-particle collision dynamics and a theoretical analysis to study a single squirmer microswimmer at high Péclet number, which moves in a low Reynolds number fluid and under gravity. The relevant parameters are the ratio $α$ of swimming to bulk sedimentation velocity and the squirmer type $β$. The combination of self-propulsion, gravitational force, hydrodynamic interactions with the wall, and thermal noise leads to a surprisingly diverse behavior. At $α> 1$ we observe cruising states, while for $α<1$ the squirmer resides close to the …
The problem of optimization of a cycle of tangential deformations of the surface of a spherical object (microsquirmer) self-propelling in a viscous fluid at low Reynolds numbers is represented in a noncanonical Hamiltonian form. The evolution system of equations for the coefficients of expansion of the surface velocity in the associated Legendre polynomials $P^1_n(\cosθ)$ is obtained. The system is quadratically nonlinear, but it is integrable in the three-mode approximation. This allows a theoretical interpretation of numerical results previously obtained for this problem.
We run numerical simulations of strongly confined suspensions of model spherical swimmers called "squirmers". Because of the confinement, the Stokeslet dipoles generated by the particles are quickly screened and the far-field flow is dominated by the source dipole for all the different kinds of squirmers. However, we show that the collective behavior of the suspension still depends on the self-propelling mechanism of the swimmers as polar states can only be observed for neutral squirmers. We demonstrate that the near-field hydrodynamic interactions play a crucial role in the alignment of the o…
Various aspects of self-motility of chemically active colloids in Newtonian fluids can be captured by simple models for their chemical activity plus a phoretic slip hydrodynamic boundary condition on their surface. For particles of simple shapes (e.g., spheres) -- as employed in many experimental studies -- which move at very low Reynolds numbers in an unbounded fluid, such models of chemically active particles effectively map onto the well studied so-called hydrodynamic squirmers [S. Michelin and E. Lauga, J. Fluid Mech. \textbf{747}, 572 (2014)]. Accordingly, intuitively appealing analogies …
Active particles, which interact hydrodynamically, display a remarkable variety of emergent collective phenomena. We use squirmers to model spherical microswimmers and explore the collective behavior of thousands of them under the influence of strong gravity using the method of multi-particle collision dynamics for simulating fluid flow. The sedimentation profile depends on the ratio of swimming to sedimentation velocity as well as on the squirmer type. It shows close packed squirmer layers at the bottom and a highly dynamic region with exponential density dependence towards the top. The mean …
Multiparticle collision dynamics is a modern coarse-grained simulation technique to treat the hydrodynamics of Newtonian fluids by solving the Navier-Stokes equations. Naturally, it also includes thermal noise. Initially it has been applied extensively to spherical colloids or bead-spring polymers immersed in a fluid. Here, we review and discuss the use of multiparticle collision dynamics for studying the motion of spherical model microswimmers called squirmers moving in viscous fluids.
We analyse a simple 'Stokesian squirmer' model for the enhanced mixing due to swimming micro-organisms. The model is based on a calculation of Thiffeault & Childress [Physics Letters A, 374, 3487 (2010), arXiv:0911.5511], where fluid particle displacements due to inviscid swimmers are added to produce an effective diffusivity. Here we show that for the viscous case the swimmers cannot be assumed to swim an infinite distance, even though their total mass displacement is finite. Instead, the largest contributions to particle displacement, and hence to mixing, arise from random changes of directi…
Self-organised structures in mixed active-passive suspensions due to hydrodynamic interactions
Capital Fund Management S.A.（资本基金管理公司）；Institut Pasteur, Université Paris Cité, CNRS UMR3738（巴斯德研究所，巴黎西岱大学，法国国家科学研究中心）；Laboratoire de Physique de l’École normale supérieure, ENS, Université PSL, CNRS, Sorbonne Université, Université Paris Cité（巴黎高等师范学院物理实验室，巴黎文理研究大学，法国国家科学研究中心，索邦大学，巴黎西岱大学）；Department of Biomedical Engineering, Tohoku University（东北大学生物医学工程系）
Inspired by recent experiments using synthetic microswimmers to manipulate droplets, we investigate the low-Reynolds-number locomotion of a model swimmer (a spherical squirmer) encapsulated inside a droplet of comparable size in another viscous fluid. Meditated solely by hydrodynamic interactions, the encaged swimmer is seen to be able to propel the droplet, and in some situations both remain in a stable co-swimming state. The problem is tackled using both an exact analytical theory and a numerical implementation based on boundary element method, with a particular focus on the kinematics of th…
We seek the best stroke sequences of a finite-size swimming predator chasing a non-motile point or finite--size prey at low Reynolds number. We use optimal control to seek the globally-optimal solutions for the former and RL for general situations. The predator is represented by a squirmer model that can translate forward and laterally, rotate and generate a stresslet flow. We identify the predator's best squirming sequences to achieve the time-optimal (TO) and efficiency-optimal (EO) predation. For a point prey, the TO squirmer executing translational motions favours a two-fold L-shaped traje…
The dynamic interactions between pairs of swimming microorganisms underpin the collective behaviour of larger suspensions, but accurately calculating pairwise collisions has typically required the use of numerical simulations in which hydrodynamic interactions are fully resolved. In this paper, we utilise analytical expressions for forces and torques acting on two closely separated spherical squirmers -- accurate to second order in the ratio of cell-cell spacing to squirmer radius -- in order to calculate their scattering dynamics. Attention is limited to squirmers whose orientation vectors li…
In this work we address the open problem of high Reynolds number limit in hydrodynamic turbulence, which we modify by considering a vanishing random (instead of deterministic) viscosity. In this formulation, a small-scale noise propagates to large scales in an inverse cascade, which can be described using qualitative arguments of the Kolmogorov-Obukhov theory. We conjecture that the limit of the resulting probability distribution exists as $\mathrm{Re} \to \infty$, and the limiting flow at finite time remains stochastic even if forcing, initial and boundary conditions are deterministic. This c…
The swimming velocity and rate of dissipation of a linear chain consisting of two or three little spheres and a big sphere is studied on the basis of low Reynolds number hydrodynamics. The big sphere is treated as a passive cargo, driven by the tail of little spheres via hydrodynamic and direct elastic interaction. The fundamental solution of Stokes' equations in the presence of a sphere with no-slip boundary condition, as derived by Oseen, is used to model the hydrodynamic interactions between the big sphere and the little spheres.
In this work, we analyze the motion of an active particle, modeled as a spherical squirmer, in linearly varying viscosity fields. In general, the presence of a particle will disturb a background viscosity field and the disturbance generated depends on the boundary conditions imposed by the particle on the viscosity field. We find that, irrespective of the details of the disturbance, active squirmer-type particle tend to align down viscosity gradients (negative viscotaxis). However, the rate of rotation and the swimming speed along the gradient do depend on the details of the interaction of the…
We analyze the data stemming from a forced incompressible hydrodynamic simulation on a grid of 2048^3 regularly spaced points, with a Taylor Reynolds number of Re~1300. The forcing is given by the Taylor-Green flow, which shares similarities with the flow in several laboratory experiments, and the computation is run for ten turnover times in the turbulent steady state. At this Reynolds number the anisotropic large scale flow pattern, the inertial range, the bottleneck, and the dissipative range are clearly visible, thus providing a good test case for the study of turbulence as it appears in na…
We present a new development of the force-coupling method (FCM) to address the accurate simulation of a large number of interacting micro-swimmers. Our approach is based on the squirmer model, which we adapt to the FCM framework, resulting in a method that is suitable for simulating semi-dilute squirmer suspensions. Other effects, such as steric interactions, are considered with our model. We test our method by comparing the velocity field around a single squirmer and the pairwise interactions between two squirmers with exact solutions to the Stokes equations and results given by other numeric…
The breakup of a fluid jet into droplets has long fascinated natural scientists, with early research dating back to the 19th century. Infinitesimal perturbations to a jet grow because of surface tension, which eventually leads to breakup of the jet into droplets (Rayleigh-Plateau instability). Although this classical phenomenon has long been studied, it is not clear how it is modified when the fluid is replaced by an active fluid. In this study, we investigate instabilities of a jet of an active fluid. The active fluid is modelled by a suspension of microswimmers that propel themselves by gene…
We derive a novel and rigorous correction to the classical Reynolds lubrication approximation for fluids with viscosity depending upon the pressure. Our analysis shows that the pressure dependence of viscosity leads to additional nonlinear terms related to the shear-rate and arising from a non negligible cross-film pressure. We present a numerical comparison between the classical Reynolds equation and our modified equation and conclude that the modified equation leads to the prediction of higher pressures and viscosities in the flow domain.
Max Planck Institute for the Physics of Complex Systems（马克斯·普朗克复杂系统物理研究所）；Brandeis University（布兰迪斯大学）；Center for Systems Biology Dresden（德累斯顿系统生物学中心）；TU Dresden（德累斯顿工业大学）
{\bf Direct} transition from low Reynolds number "weak" Gaussian turbulence to fully developed "strong" turbulence at a critical Reynolds number $R^{tr}_λ\approx 8.91$ has recently been theoretically predicted and tested in high resolution numerical simulations of V. Yakhot \& D. A. Donzis, Phys. Rev. Lett. {\bf 119}, 044501 (2017) \& PhysicaD, {\bf 384-385}, 12 (2018) on an example of a flow excited by a Gaussian random force. The matching between the low-Reynolds number Gaussian asymptotic ($Re<<Re^{tr}$) and the multi-scaling one, dominating the high-Re limit ($Re>>Re^{tr}$), led to closed …
This article presents experimental and numerical studies on the effect of free stream turbulence on evolution of flow over an autonomous underwater vehicle (AUV) hull form at three Reynolds numbers with different submergence depths and angles of attack. The experiments were conducted in a recirculating water tank and the instantaneous velocity profiles were recorded along the AUV using Acoustic Doppler Velocimetry (ADV). The experimental results of stream-wise mean velocity, turbulent kinetic energy(TKE) and Reynolds stresses were used to validate the predictive capability of a Reynolds stress…
Swimming at small Reynolds number of a linear assembly of identical spheres immersed in a viscous fluid is studied on the basis of a set of equations of motion for the individual spheres. The motion of the spheres is caused by actuating forces and forces derived from a direct interaction potential, as well as hydrodynamic forces exerted by the fluid as frictional and added mass hydrodynamic interactions. The swimming velocity is deduced from the momentum balance equation for the assembly of spheres, and the mean power required during a period is calculated from an instantaneous power equation.…
We investigate the scaling behavior of longitudinal and transverse structure functions in homogeneous and isotropic magneto-hydrodynamic (MHD) turbulence by means of an exact hierarchy of structure function equations as well as by direct numerical simulations of two- and three-dimensional MHD turbulence. In particular, rescaling relations between longitudinal and transverse structure functions are derived and utilized in order to compare different scaling behavior in the inertial range. It is found that there are no substantial differences between longitudinal and transverse structure function…
Slender objects are commonplace in microscale flow problems, from soft deformable sensors to biological filaments such as flagella and cilia. Whilst much research has focussed on the local translational motion of these slender bodies, relatively little attention has been given to local rotation, even though it can be the dominant component of motion. In this study, we explore a classically motivated ansatz for the Stokes flow around a rotating slender body via superposed rotlet singularities, which leads us to pose an alternative ansatz that accounts for both translation and rotation. Through …
Modelling hydrodynamic lubrication is crucial in the design of engineering components as well as for a fundamental understanding of friction mechanisms. The cornerstone of thin-film flow modelling is the Reynolds equation -- a lower-dimensional representation of the Stokes equation. However, the derivation of the Reynolds equation is based on assumptions and fixed form constitutive relations, that may not generally be valid, especially when studying systems under extreme conditions. Furthermore, these explicit assumptions about the constitutive behaviour of the fluid prohibit applications in a…
We investigate properties of the scale dependence and cross-scale transfer of kinetic energy in compressible three-dimensional hydrodynamic turbulence, by means of two direct numerical simulations of decaying turbulence with initial Mach numbers M = 1/3 and M = 1, and with moderate Reynolds numbers, R_lambda ~ 100. The turbulent dynamics is analyzed using compressible and incompressible versions of the dynamic spectral transfer (ST) and the Karman-Howarth-Monin (KHM) equations. We find that the nonlinear coupling leads to a flux of the kinetic energy to small scales where it is dissipated; at …
Translational and rotational swimming at small Reynolds number of a planar assembly of identical spheres immersed in an incompressible viscous fluid is studied on the basis of a set of equations of motion for the individual spheres. The motion of the spheres is caused by actuating forces and forces derived from a direct interaction potential, as well as hydrodynamic forces exerted by the fluid as frictional and added mass hydrodynamic interactions. The translational and rotational swimming velocities of the assembly are deduced from momentum and angular momentum balance equations. The mean pow…
Swimming velocity and rate of dissipation of a sphere with surface distortions are discussed on the basis of the Stokes equations of low Reynolds number hydrodynamics. At first the surface distortions are assumed to cause an irrotational axisymmetric flow pattern. The efficiency of swimming is optimized within this class of flows. Subsequently more general axisymmetric polar flows with vorticity are considered. This leads to a considerably higher maximum efficiency. An additional measure of swimming performance is proposed based on the energy consumption for given amplitude of stroke.
We demonstrate that fluid flow cloaking solutions based on active hydrodynamic metamaterials exist for two-dimensional flows past a cylinder in a wide range of Reynolds numbers, up to approximately 200. Within the framework of the classical Brinkman equation for homogenized porous flow, we demonstrate using two different methods that such cloaked flows can be dynamically stable for $Re$ in the range 5-119. The first, highly efficient, method is based on a linearization of the Brinkman-Navier-Stokes equation and finding the eigenfrequencies of the least stable eigen-perturbations; the second me…
After colliding with a surface, microswimmers reside there during the detention time. They accumulate and may form complex structures such as biofilms. We introduce a general framework to calculate the distribution of detention times using the method of first-passage times and study how rotational noise and hydrodynamic interactions influence the escape from a surface. We compare generic swimmer models to the simple active Brownian particle. While the respective detention times of source dipoles are smaller, the ones of pullers are larger by up to several orders of magnitude, and pushers show …
Self-organization of moving objects in hydrodynamic environments has recently attracted considerable attention in connection to natural phenomena and living systems. However, the underlying physical mechanism is much less clear due to the intrinsically nonequilibrium nature, compared with self-organization of thermal systems. Hydrodynamic interactions are believed to play a crucial role in such phenomena. To elucidate the fundamental physical nature of many-body hydrodynamic interactions at a finite Reynolds number, here we study a system of co-rotating hard disks in a two-dimensional viscous …
The Vortex-induced vibration (VIV) prediction of long flexible cylindrical structures relies on the accuracy of the hydrodynamic database constructed via rigid cylinder forced vibration experiments. However, to create a comprehensive hydrodynamic database with tens of input parameters including vibration amplitudes and frequencies and Reynolds number, surface roughness and so forth is technically challenging and virtually impossible due to the large number of experiments required. The current work presents an alternative approach to approximate the crossflow (CF) hydrodynamic coefficient datab…
This paper aims to numerically verify the large Reynolds number asymptotic theory of magneto-hydrodynamic (MHD) flows proposed in the companion paper Deguchi (2019). To avoid any complexity associated with the chaotic nature of turbulence and flow geometry, nonlinear steady solutions of the viscous-resistive magneto-hydrodynamic equations in plane Couette flow have been utilised. Two classes of nonlinear MHD states, which convert kinematic energy to magnetic energy effectively, have been determined. The first class of nonlinear states can be obtained when a small spanwise uniform magnetic fiel…
We study the effects of fluid-particle and particle-particle interactions in a three-dimensional monodispersed reactor with unstable fluidization. Simulations were conducted using the Immersed Boundary Method (IBM) for particle Reynolds numbers of 20-70 with an Archimedes number of 23600. Two different flow regimes were identified as a function of the particle Reynolds number. For low particle Reynolds numbers ($20 < Re_p < 40$), the porosity is relatively low and the particle dynamics are dominated by interparticle collisions that produce anisotropic particle velocity fluctuations. The relati…
We derive analytical solutions for hydrodynamic sources and sinks to granular temperature in moderately dense suspensions of elastic particles at finite Reynolds numbers. Modeling the neighbor-induced drag disturbances with a Langevin equation allows an exact solution for the joint fluctuating acceleration-velocity distribution function $P\left(v^{\prime},a^{\prime};t\right)$. Quadrant-conditioned covariance integrals of $P\left(v^{\prime},a^{\prime};t\right)$ yield the hydrodynamic source and sink that dictate the evolution of granular temperature. Analytical predictions are in agreement with…
It is extremely uncommon to be able to predict the velocity profile of a turbulent flow. In two-dimensional flows, atmosphere dynamics, and plasma physics, large scale coherent jets are created through inverse energy transfers from small scales to the largest scales of the flow. We prove that in the limits of vanishing energy injection, vanishing friction, and small scale forcing, the velocity profile of a jet obeys an equation independent of the details of the forcing. We find another general relation for the maximal curvature of a jet and we give strong arguments to support the existence of …
Lattice Boltzmann Method (LBM) simulations for turbulent flows over a fractal and non-fractal obstacles are presented. The wake hydrodynamics are compared and discussed in terms of flow relaxation, Strouhal numbers and wake length for different Reynolds numbers. Three obstacle topologies are studied, Solid (SS), Porous Regular (PR) and Porous Fractal (FR). In particular we observe that the oscillation present in the case of the solid square can be annihilated or only pushed downstream depending on the topology ot the porous obstacle. The Lattice Boltzmann Method (LBM) is implemented over a ran…
We study numerically the hydrodynamics of a self-propelled particle system, consisting of spherical squirmers sedimented on a flat surface. We observe the emergence of dynamic structures, due to the interplay of particle-particle and particle-wall hydrodynamic interactions. At low coverages, our results demonstrate the formation of small chiral spinners: two or three particles are bound together via near-field hydrodynamic interactions and form a rotating dimer or trimer respectively. The stability of the self-organised spinners can be tuned by the strength of the sedimentation. Increasing the…
A single flexible filament can be actuated to escape from the scallop theorem and generate net propulsion at low Reynolds number. In this work, we study the dynamics of a simple boundary-driven multi-filament swimmer, a two-arm clamshell actuated at the hinged point, using a nonlocal slender body approximation with full hydrodynamic interactions. We first consider an elastic clamshell consisted of flexible filaments with intrinsic curvature, and then build segmental models consisted of rigid segments connected by different mechanical joints with different forms of response torques. The simplic…
The swimming of an assembly of rigid spheres immersed in a viscous fluid of infinite extent is studied in low Reynolds number hydrodynamics. The instantaneous swimming velocity and rate of dissipation are expressed in terms of the time-dependent displacements of sphere centers about their collective motion. For small amplitude swimming with periodically oscillating displacements, optimization of the mean swimming speed at given mean power leads to an eigenvalue problem involving a velocity matrix and a power matrix. The corresponding optimal stroke permits generalization to large amplitude mot…
Reynolds similitude, a key concept in hydrodynamics, states that two phenomena of different length scales with a similar geometry are physically identical. Flow properties are universally determined in a unified way in terms of the Reynolds number ${\cal R}$ (dimensionless, ratio of inertial to viscous forces in incompressible fluids). For example, the drag coefficient $c_D$ of objects with similar shapes moving in fluids is expressed by a universal function of ${\cal R}$. Certain studies introduced similar dimensionless numbers, that is, the superfluid Reynolds number ${\cal R}_s$, to charact…
It is presently believed that flows of viscoelastic polymer solutions in geometries such as a straight pipe or channel are linearly stable. Here we present experimental evidence that such flows can be nonlinearly unstable and can exhibit a subcritical bifurcation. Velocimetry measurements are performed in a long, straight micro-channel; flow disturbances are introduced at the entrance of the channel system by placing a variable number of obstacles. Above a critical flow rate and a critical size of the perturbation, a sudden onset of large velocity fluctuations indicates presence of a nonlinear…
