Detecting conditional independencies plays a key role in several statistical and machine learning tasks, especially in causal discovery algorithms. In this study, we introduce LCIT (Latent representation based Conditional Independence Test)-a novel non-parametric method for conditional independence testing based on representation learning. Our main contribution involves proposing a generative framework in which to test for the independence between X and Y given Z, we first learn to infer the latent representations of target variables X and Y that contain no information about the conditioning variable Z. The latent variables are then investigated for any significant remaining dependencies, which can be performed using the conventional partial correlation test. The empirical evaluations show that LCIT outperforms several state-of-the-art baselines consistently under different evaluation metrics, and is able to adapt really well to both non-linear and high-dimensional settings on a diverse collection of synthetic and real data sets.
Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）
Conditional independence testing is an important problem, especially in Bayesian network learning and causal discovery. Due to the curse of dimensionality, testing for conditional independence of continuous variables is particularly challenging. We propose a Kernel-based Conditional Independence test (KCI-test), by constructing an appropriate test statistic and deriving its asymptotic distribution under the null hypothesis of conditional independence. The proposed method is computationally efficient and easy to implement. Experimental results show that it outperforms other methods, especially …
Max Planck Institute for Informatics（马克斯·普朗克信息学研究所）；Saarland University（萨尔兰大学）；CISPA Helmholtz Center for Information Security（亥姆霍兹信息安全研究中心CISPA）
Testing for conditional independence is a core aspect of constraint-based causal discovery. Although commonly used tests are perfect in theory, they often fail to reject independence in practice, especially when conditioning on multiple variables. We focus on discrete data and propose a new test based on the notion of algorithmic independence that we instantiate using stochastic complexity. Amongst others, we show that our proposed test, SCI, is an asymptotically unbiased as well as $L_2$ consistent estimator for conditional mutual information (CMI). Further, we show that SCI can be reformulat…
Meta-Dependence in Conditional Independence Testing
Thayer School of Engineering Dartmouth College（达特茅斯学院工程学院）；Schmidt Center Broad Institute of MIT and Harvard（MIT和哈佛大学Broad研究所Schmidt中心）；Laboratory for Information and Decision Systems Massachusetts Institute of Technology（信息与决策系统实验室麻省理工学院）；Broad Institute of MIT and Harvard（MIT和哈佛大学Broad研究所）
Constraint-based causal discovery (CCD) algorithms require fast and accurate conditional independence (CI) testing. The Kernel Conditional Independence Test (KCIT) is currently one of the most popular CI tests in the non-parametric setting, but many investigators cannot use KCIT with large datasets because the test scales cubicly with sample size. We therefore devise two relaxations called the Randomized Conditional Independence Test (RCIT) and the Randomized conditional Correlation Test (RCoT) which both approximate KCIT by utilizing random Fourier features. In practice, both of the proposed …
Conditional independence of treatment assignment from potential outcomes is a commonly used but nonrefutable assumption. We derive identified sets for various treatment effect parameters under nonparametric deviations from this conditional independence assumption. These deviations are defined via a conditional treatment assignment probability, which makes it straightforward to interpret. Our results can be used to assess the robustness of empirical conclusions obtained under the baseline conditional independence assumption.
On the Number of Conditional Independence Tests in Constraint-based Causal Discovery
Eric and Wendy Schmidt Center, Broad Institute of MIT and Harvard（埃里克和文黛斯中心，MIT和哈佛Broad研究所）；Centre de Formació Interdisciplinària Superior, Universitat Politècnica de Catalunya（跨学科高级培训中心，加泰罗尼亚理工大学）；Laboratory for Information and Decision Systems, Massachusetts Institute of Technology（信息与决策系统实验室，麻省理工学院）
The goal of this paper is to integrate the notions of stochastic conditional independence and variation conditional independence under a more general notion of extended conditional independence. We show that under appropriate assumptions the calculus that applies for the two cases separately (axioms of a separoid) still applies for the extended case. These results provide a rigorous basis for a wide range of statistical concepts, including ancillarity and sufficiency, and, in particular, the Decision Theoretic framework for statistical causality, which uses the language and calculus of conditi…
This work investigates the intersection property of conditional independence. It states that for random variables $A,B,C$ and $X$ we have that $X$ independent of $A$ given $B,C$ and $X$ independent of $B$ given $A,C$ implies $X$ independent of $(A,B)$ given $C$. Under the assumption that the joint distribution has a continuous density, we provide necessary and sufficient conditions under which the intersection property holds. The result has direct applications to causal inference: it leads to strictly weaker conditions under which the graphical structure becomes identifiable from the joint dis…
Domain Adaptation (DA) is a typical problem in machine learning that aims to transfer the model trained on source domain to target domain with different distribution. Causal DA is a special case of DA that solves the problem from the view of causality. It embeds the probabilistic relationships in multiple domains in a larger causal structure network of a system and tries to find the causal source (or intervention) on the system as the reason of distribution drifts of the system states across domains. In this sense, causal DA is transformed as a causal discovery problem that finds invariant rep…
In an independence model, the triplets that represent conditional independences between singletons are called elementary. It is known that the elementary triplets represent the independence model unambiguously under some conditions. In this paper, we show how this representation helps performing some operations with independence models, such as finding the dominant triplets or a minimal independence map of an independence model, or computing the union or intersection of a pair of independence models, or performing causal reasoning. For the latter, we rephrase in terms of conditional independen…
Causal inference methods based on conditional independence construct Markov equivalent graphs, and cannot be applied to bivariate cases. The approaches based on independence of cause and mechanism state, on the contrary, that causal discovery can be inferred for two observations. In our contribution, we challenge to reconcile these two research directions. We study the role of latent variables such as latent instrumental variables and hidden common causes in the causal graphical structures. We show that the methods based on the independence of cause and mechanism, indirectly contain traces of …
Conditional independence testing is a fundamental problem underlying causal discovery and a particularly challenging task in the presence of nonlinear and high-dimensional dependencies. Here a fully non-parametric test for continuous data based on conditional mutual information combined with a local permutation scheme is presented. Through a nearest neighbor approach, the test efficiently adapts also to non-smooth distributions due to strongly nonlinear dependencies. Numerical experiments demonstrate that the test reliably simulates the null distribution even for small sample sizes and with hi…
This paper is concerned with test of the conditional independence. We first establish an equivalence between the conditional independence and the mutual independence. Based on the equivalence, we propose an index to measure the conditional dependence by quantifying the mutual dependence among the transformed variables. The proposed index has several appealing properties. (a) It is distribution free since the limiting null distribution of the proposed index does not depend on the population distributions of the data. Hence the critical values can be tabulated by simulations. (b) The proposed in…
CREST（法国 Crest 研究中心）；ENSAE（法国国家统计与经济管理学院）；Facebook AI Research（脸书人工智能研究院）；Université Paris-Dauphine（巴黎多芬大学）；Technion（以色列理工学院）
We propose a new conditional dependence measure and a statistical test for conditional independence. The measure is based on the difference between analytic kernel embeddings of two well-suited distributions evaluated at a finite set of locations. We obtain its asymptotic distribution under the null hypothesis of conditional independence and design a consistent statistical test from it. We conduct a series of experiments showing that our new test outperforms state-of-the-art methods both in terms of type-I and type-II errors even in the high dimensional setting.
From Conditional to Unconditional Independence: Testing Conditional Independence via Transport Maps
Institute of Statistics and Big Data, Renmin University of China（中国人民大学统计与大数据研究院）；Department of Data Science and Artificial Intelligence, The Hong Kong Polytechnic University（香港理工大学数据科学与人工智能学院）；Department of Applied Mathematics, The Hong Kong Polytechnic University（香港理工大学应用数学系）
Federal University of São Carlos（圣卡洛斯联邦大学）；University of São Paulo（圣保罗大学）
Conditional independence testing is a key problem required by many machine learning and statistics tools. In particular, it is one way of evaluating the usefulness of some features on a supervised prediction problem. We propose a novel conditional independence test in a predictive setting, and show that it achieves better power than competing approaches in several settings. Our approach consists in deriving a p-value using a permutation test where the predictive power using the unpermuted dataset is compared with the predictive power of using dataset where the feature(s) of interest are permut…
We formulate and analyze a graphical model selection method for inferring the conditional independence graph of a high-dimensional nonstationary Gaussian random process (time series) from a finite-length observation. The observed process samples are assumed uncorrelated over time and having a time-varying marginal distribution. The selection method is based on testing conditional variances obtained for small subsets of process components. This allows to cope with the high-dimensional regime, where the sample size can be (drastically) smaller than the process dimension. We characterize the requ…
It is often stated in papers tackling the task of inferring Bayesian network structures from data that there are these two distinct approaches: (i) Apply conditional independence tests when testing for the presence or otherwise of edges; (ii) Search the model space using a scoring metric. Here I argue that for complete data and a given node ordering this division is a myth, by showing that cross entropy methods for checking conditional independence are mathematically identical to methods based upon discriminating between models by their overall goodness-of-fit logarithmic scores.
Testing Conditional Mean Independence Using Generative Neural Networks
University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；University of Maryland, College Park（马里兰大学帕克分校）；Washington University in St Louis（圣路易斯华盛顿大学）
University of Cambridge（剑桥大学）；The Alan Turing Institute（艾伦·图灵研究所）；University of California Los Angeles（加州大学洛杉矶分校）
We consider the hypothesis testing problem of detecting conditional dependence, with a focus on high-dimensional feature spaces. Our contribution is a new test statistic based on samples from a generative adversarial network designed to approximate directly a conditional distribution that encodes the null hypothesis, in a manner that maximizes power (the rate of true negatives). We show that such an approach requires only that density approximation be viable in order to ensure that we control type I error (the rate of false positives); in particular, no assumptions need to be made on the form …
Sequential Kernel-based Conditional Independence Testing via Adaptive Betting
Department of Computer Science, University of British Columbia, Vancouver, Canada（不列颠哥伦比亚大学计算机科学系，温哥华，加拿大）；Alberta Machine Intelligence Institute, Edmonton, Canada（阿尔伯塔机器智能研究所，爱德蒙顿，加拿大）
Testing (conditional) independence of multivariate random variables is a task central to statistical inference and modelling in general - though unfortunately one for which to date there does not exist a practicable workflow. State-of-art workflows suffer from the need for heuristic or subjective manual choices, high computational complexity, or strong parametric assumptions. We address these problems by establishing a theoretical link between multivariate/conditional independence testing, and model comparison in the multivariate predictive modelling aka supervised learning task. This link all…
We present and evaluate the Fast (conditional) Independence Test (FIT) -- a nonparametric conditional independence test. The test is based on the idea that when $P(X \mid Y, Z) = P(X \mid Y)$, $Z$ is not useful as a feature to predict $X$, as long as $Y$ is also a regressor. On the contrary, if $P(X \mid Y, Z) \neq P(X \mid Y)$, $Z$ might improve prediction results. FIT applies to thousand-dimensional random variables with a hundred thousand samples in a fraction of the time required by alternative methods. We provide an extensive evaluation that compares FIT to six extant nonparametric indepe…
Adobe Research（奥多比研究院）；University of Massachusetts, Amherst（马萨诸塞大学阿默斯特分校）
Conditional independence has been widely used in AI, causal inference, machine learning, and statistics. We introduce categoroids, an algebraic structure for characterizing universal properties of conditional independence. Categoroids are defined as a hybrid of two categories: one encoding a preordered lattice structure defined by objects and arrows between them; the second dual parameterization involves trigonoidal objects and morphisms defining a conditional independence structure, with bridge morphisms providing the interface between the binary and ternary structures. We illustrate categoro…
We show how to estimate a model's test error from unlabeled data, on distributions very different from the training distribution, while assuming only that certain conditional independencies are preserved between train and test. We do not need to assume that the optimal predictor is the same between train and test, or that the true distribution lies in any parametric family. We can also efficiently differentiate the error estimate to perform unsupervised discriminative learning. Our technical tool is the method of moments, which allows us to exploit conditional independencies in the absence of …
Practical Kernel Tests of Conditional Independence
McGill University and Mila（麦吉尔大学和Mila）；Gatsby Computational Neuroscience Unit, University College London Centre for Artificial Intelligence, University College London（Gatsby计算神经科学单元，伦敦大学学院人工智能中心，伦敦大学学院）；Microsoft AI（微软AI）；University of British Columbia and Amii（不列颠哥伦比亚大学和Amii）；Gatsby Computational Neuroscience Unit, University College London Google DeepMind（Gatsby计算神经科学单元，伦敦大学学院谷歌DeepMind）
Fairness via Independence: A (Conditional) Distance Covariance Framework
School of Mathematics and Statistics, Huazhong University of Science and Technology, Wuhan, Hubei, China（华中科技大学数学与统计学院）；Institute of Interdisciplinary Research for Mathematics and Applied Science & Hubei Key Laboratory of Engineering Modeling and Scientific Computing, Huazhong University of Science and Technology, Wuhan, Hubei, China（华中科技大学数学与应用科学交叉研究 institute 及湖北省工程建模与科学计算重点实验室）
Markov random fields provide a compact representation of joint probability distributions by representing its independence properties in an undirected graph. The well-known Hammersley-Clifford theorem uses these conditional independences to factorize a Gibbs distribution into a set of factors. However, an important issue of using a graph to represent independences is that it cannot encode some types of independence relations, such as the context-specific independences (CSIs). They are a particular case of conditional independences that is true only for a certain assignment of its conditioning s…
We introduce a nonparametric graphical model for discrete node variables based on additive conditional independence. Additive conditional independence is a three way statistical relation that shares similar properties with conditional independence by satisfying the semi-graphoid axioms. Based on this relation we build an additive graphical model for discrete variables that does not suffer from the restriction of a parametric model such as the Ising model. We develop an estimator of the new graphical model via the penalized estimation of the discrete version of the additive precision operator a…
Independence and Conditional Independence (CI) are two fundamental concepts in probability and statistics, which can be applied to solve many central problems of statistical inference. There are many existing independence and CI measures defined from diverse principles and concepts. In this paper, the 16 independence measures and 16 CI measures were reviewed and then evaluated with simulated and real data. For the independence measures, eight simulated data were generating from normal distribution, normal and Archimedean copula functions to compare the measures in bivariate or multivariate, li…
Unsupervised domain adaptation studies how to transfer a learner from a labeled source domain to an unlabeled target domain with different distributions. Existing methods mainly focus on matching the marginal distributions of the source and target domains, which probably lead a misalignment of samples from the same class but different domains. In this paper, we deal with this misalignment by achieving the class-conditioned transferring from a new perspective. We aim to maximize the conditional independence of feature and domain given class in the reproducing kernel Hilbert space. The optimizat…
