Automatic medical question summarization can significantly help the system to understand consumer health questions and retrieve correct answers. The Seq2Seq model based on maximum likelihood estimation (MLE) has been applied in this task, which faces two general problems: the model can not capture well question focus and and the traditional MLE strategy lacks the ability to understand sentence-level semantics. To alleviate these problems, we propose a novel question focus-driven contrastive learning framework (QFCL). Specially, we propose an easy and effective approach to generate hard negative samples based on the question focus, and exploit contrastive learning at both encoder and decoder to obtain better sentence level representations. On three medical benchmark datasets, our proposed model achieves new state-of-the-art results, and obtains a performance gain of 5.33, 12.85 and 3.81 points over the baseline BART model on three datasets respectively. Further human judgement and detailed analysis prove that our QFCL model learns better sentence representations with the ability to distinguish different sentence meanings, and generates high-quality summaries by capturing question focus.
Beijing University of Posts and Telecommunications（北京邮电大学）
Unlike well-structured text, such as news reports and encyclopedia articles, dialogue content often comes from two or more interlocutors, exchanging information with each other. In such a scenario, the topic of a conversation can vary upon progression and the key information for a certain topic is often scattered across multiple utterances of different speakers, which poses challenges to abstractly summarize dialogues. To capture the various topic information of a conversation and outline salient facts for the captured topics, this work proposes two topic-aware contrastive learning objectives,…
Megagon Labs（美乐岗实验室）；University of Edinburgh（爱丁堡大学）
Opinion summarization focuses on generating summaries that reflect popular subjective information expressed in multiple online reviews. While generated summaries offer general and concise information about a particular hotel or product, the information may be insufficient to help the user compare multiple different choices. Thus, the user may still struggle with the question "Which one should I pick?" In this paper, we propose the comparative opinion summarization task, which aims at generating two contrastive summaries and one common summary from two different candidate sets of reviews. We de…
Huawei Ireland Research Center（华为爱尔兰研究中心）；The Open University（开放大学）；Singapore Management University（新加坡管理大学）
We propose Corder, a self-supervised contrastive learning framework for source code model. Corder is designed to alleviate the need of labeled data for code retrieval and code summarization tasks. The pre-trained model of Corder can be used in two ways: (1) it can produce vector representation of code which can be applied to code retrieval tasks that do not have labeled data; (2) it can be used in a fine-tuning process for tasks that might still require label data such as code summarization. The key innovation is that we train the source code model by asking it to recognize similar and dissimi…
Medical Question Summarization with Entity-driven Contrastive Learning
Key Laboratory of Computing Power Network and Information Security, Ministry of Education, Shandong Computer Science Center (National Supercomputer Center in Jinan), Qilu University of Technology (Shandong Academy of Sciences)（计算机网络与信息安全部分重点实验室，教育部，山东计算机科学中心（济南国家超算中心），齐鲁工业大学（山东省科学院））；Shandong Provincial Key Laboratory of Computer Networks, Shandong Fundamental Research Center for Computer Science（山东省计算机网络重点实验室，山东省计算机科学基础研究中心）；Australian Artificial Intelligence Institute, University of Technology Sydney（澳大利亚人工智能研究所，悉尼大学技术学院）；Affiliated Hospital of Shandong University of Traditional Chinese Medicine（山东中医药大学附属医院）；School of Computing, Macquaire University（计算机学院，麦考瑞大学）；Data Science Institute, University of Technology Sydney（数据科学研究所，悉尼大学技术学院）
The Chinese University of Hong Kong (Shenzhen)（香港中文大学（深圳））；Shenzhen Research Institute of Big Data（深圳大数据研究院）；Pazhou Lab（琶洲实验室）
The impression section of a radiology report summarizes the most prominent observation from the findings section and is the most important section for radiologists to communicate to physicians. Summarizing findings is time-consuming and can be prone to error for inexperienced radiologists, and thus automatic impression generation has attracted substantial attention. With the encoder-decoder framework, most previous studies explore incorporating extra knowledge (e.g., static pre-defined clinical ontologies or extra background information). Yet, they encode such knowledge by a separate encoder t…
Experience and Evidence are the eyes of an excellent summarizer! Towards Knowledge Infused Multi-modal Clinical Conversation Summarization
Indian Institute of Technology, Patna（印度理工学院巴特那分校）；Indian Institute of Technology, Bombay（印度理工学院孟买分校）；All India Institute of Medical Sciences, Rishikesh（全印医学科学学院瑞诗凯诗分院）
Discourse-Aware Scientific Paper Recommendation via QA-Style Summarization and Multi-Level Contrastive Learning
Institute of Communication Studies, Communication University of China（中国传媒大学通信学院）；Beijing Renhe Information Technology Co., Ltd.（北京润和信息技术有限公司）；Key Laboratory of Digital Publishing and Total Process Management of Scientific and Technical Journals（科技期刊数字出版总流程管理重点实验室）
Department of Computer Science, University of Illinois, Chicago, IL, 60607, USA（伊利诺伊大学芝加哥分校计算机科学系）；Indian Institute of Technology, Varanasi, India（印度班加罗尔理工学院）；Department of Computer Science & Engineering, Indraprastha Institute of Information Technology, Delhi, New Delhi, 110020, India（印度德里印度信息技术研究所计算机科学与工程系）
North University of China（中北大学）；Dalian University of Technology（大连理工大学）
Predicting medications is a crucial task in many intelligent healthcare systems. It can assist doctors in making informed medication decisions for patients according to electronic medical records (EMRs). However, medication prediction is a challenging data mining task due to the complex relations between medical codes. Most existing studies focus on utilizing inherent relations between homogeneous codes of medical ontology graph to enhance their representations using supervised methods, and few studies pay attention to the valuable relations between heterogeneous or homogeneous medical codes f…
SuperCL: Superpixel Guided Contrastive Learning for Medical Image Segmentation Pre-training
Institute of Medical Technology, Peking University Health Science Center, Peking University（北京大学医学部医学技术研究所）；Department of Biomedical Engineering, Peking University（北京大学生物医学工程系）；National Biomedical Imaging Center, Peking University（北京大学国家生物医学成像中心）；Institute of Biomedical Engineering, Shenzhen Bay Laboratory（深圳湾实验室生物医学工程研究所）；Institute of Biomedical Engineering, Peking University Shenzhen Graduate School（北京大学深圳研究生院生物医学工程研究所）
A Learnable Multi-views Contrastive Framework with Reconstruction Discrepancy for Medical Time-Series
School of Medicine, The Chinese University of Hong Kong, Shenzhen（香港中文大学（深圳）医学院）；Digital Department, China Unicom Global Co., Ltd（中国联通全球有限公司数字部）；University of the Chinese Academy of Sciences（中国科学院大学）；Shenzhen International Graduate School, Tsinghua University（清华大学深圳国际研究生院）
Medical image segmentation, or computing voxelwise semantic masks, is a fundamental yet challenging task to compute a voxel-level semantic mask. To increase the ability of encoder-decoder neural networks to perform this task across large clinical cohorts, contrastive learning provides an opportunity to stabilize model initialization and enhance encoders without labels. However, multiple target objects (with different semantic meanings) may exist in a single image, which poses a problem for adapting traditional contrastive learning methods from prevalent 'image-level classification' to 'pixel-l…
Multi-level Asymmetric Contrastive Learning for Volumetric Medical Image Segmentation Pre-training
Peking University（北京大学）；Peking University Health Science Center（北京大学医学部）；National Biomedical Imaging Center（国家生物医学成像中心）；Peking University Shenzhen Graduate School（北京大学深圳研究生院）；Georgia Institute of Technology（佐治亚理工学院）；UT Southwestern Medical Center（西南大学达拉斯医学中心）
Contrastive learning has shown great promise over annotation scarcity problems in the context of medical image segmentation. Existing approaches typically assume a balanced class distribution for both labeled and unlabeled medical images. However, medical image data in reality is commonly imbalanced (i.e., multi-class label imbalance), which naturally yields blurry contours and usually incorrectly labels rare objects. Moreover, it remains unclear whether all negative samples are equally negative. In this work, we present ACTION, an Anatomical-aware ConTrastive dIstillatiON framework, for semi-…
Hasso Plattner Institute for Digital Engineering, University of Potsdam（波茨坦大学哈索·普拉特纳数字工程研究所）；TU Kaiserslautern（凯泽斯劳滕工业大学）；Hasso Plattner Institute for Digital Health at the Icahn School of Medicine at Mount Sinai（西奈山伊坎医学院哈索·普拉特纳数字健康研究所）
High annotation costs are a substantial bottleneck in applying modern deep learning architectures to clinically relevant medical use cases, substantiating the need for novel algorithms to learn from unlabeled data. In this work, we propose ContIG, a self-supervised method that can learn from large datasets of unlabeled medical images and genetic data. Our approach aligns images and several genetic modalities in the feature space using a contrastive loss. We design our method to integrate multiple modalities of each individual person in the same model end-to-end, even when the available modalit…
Institute of Artificial Intelligence, Soochow University（苏州大学人工智能研究院）；School of Computer Science and Technology, Soochow University（苏州大学计算机科学与技术学院）；Alibaba DAMO Academy（阿里巴巴达摩院）；School of Engineering, Westlake University（西湖大学工学院）
We propose a contrastive attention mechanism to extend the sequence-to-sequence framework for abstractive sentence summarization task, which aims to generate a brief summary of a given source sentence. The proposed contrastive attention mechanism accommodates two categories of attention: one is the conventional attention that attends to relevant parts of the source sentence, the other is the opponent attention that attends to irrelevant or less relevant parts of the source sentence. Both attentions are trained in an opposite way so that the contribution from the conventional attention is encou…
SupReMix: Supervised Contrastive Learning for Medical Imaging Regression with Mixup
Yong Loo Lin School of Medicine, National University of Singapore（杨潞龄医学院，新加坡国立大学）；National University of Singapore（新加坡国立大学）；Duke University（杜克大学）；ETH Zurich（苏黎世联邦理工学院）
IIIS, Tsinghua University（清华大学交叉信息研究院）；Microsoft Research Asia（微软亚洲研究院）；Shanghai Qi Zhi Institute（上海期智研究院）
Contrastive learning models have achieved great success in unsupervised visual representation learning, which maximize the similarities between feature representations of different views of the same image, while minimize the similarities between feature representations of views of different images. In text summarization, the output summary is a shorter form of the input document and they have similar meanings. In this paper, we propose a contrastive learning model for supervised abstractive text summarization, where we view a document, its gold summary and its model generated summaries as diff…
Tencent AI Platform Department（腾讯人工智能平台部）；Harbin Institute of Technology（哈尔滨工业大学）
Generating factual-consistent summaries is a challenging task for abstractive summarization. Previous works mainly encode factual information or perform post-correct/rank after decoding. In this paper, we provide a factual-consistent solution from the perspective of contrastive learning, which is a natural extension of previous works. We propose CO2Sum (Contrastive for Consistency), a contrastive learning scheme that can be easily applied on sequence-to-sequence models for factual-consistent abstractive summarization, proving that the model can be fact-aware without modifying the architecture.…
University of Delaware（特拉华大学）；University of Maryland, College Park（马里兰大学帕克分校）；Tongji University（同济大学）；Tezign（特赞）
In this paper, we present a denoising sequence-to-sequence (seq2seq) autoencoder via contrastive learning for abstractive text summarization. Our model adopts a standard Transformer-based architecture with a multi-layer bi-directional encoder and an auto-regressive decoder. To enhance its denoising ability, we incorporate self-supervised contrastive learning along with various sentence-level document augmentation. These two components, seq2seq autoencoder and contrastive learning, are jointly trained through fine-tuning, which improves the performance of text summarization with regard to ROUGE…
Hainan University（海南大学）；Institute of Automation, Chinese Academy of Sciences（中国科学院自动化研究所）
This study presents three deidentified large medical text datasets, named DISCHARGE, ECHO and RADIOLOGY, which contain 50K, 16K and 378K pairs of report and summary that are derived from MIMIC-III, respectively. We implement convincing baselines of automated abstractive summarization on the proposed datasets with pre-trained encoder-decoder language models, including BERT2BERT, T5-large and BART. Further, based on the BART model, we leverage the sampled summaries from the train set as prior knowledge guidance, for encoding additional contextual representations of the guidance with the encoder …
In medical dialogue summarization, summaries must be coherent and must capture all the medically relevant information in the dialogue. However, learning effective models for summarization require large amounts of labeled data which is especially hard to obtain. We present an algorithm to create synthetic training data with an explicit focus on capturing medically relevant information. We utilize GPT-3 as the backbone of our algorithm and scale 210 human labeled examples to yield results comparable to using 6400 human labeled examples (~30x) leveraging low-shot learning and an ensemble method. …
National Centre for Text Mining（国家文本挖掘中心）；The University of Manchester（曼彻斯特大学）；Chancefocus AMC
Recently, neural topic models (NTMs) have been incorporated into pre-trained language models (PLMs), to capture the global semantic information for text summarization. However, in these methods, there remain limitations in the way they capture and integrate the global semantic information. In this paper, we propose a novel model, the graph contrastive topic enhanced language model (GRETEL), that incorporates the graph contrastive topic model with the pre-trained language model, to fully leverage both the global and local contextual semantics for long document extractive summarization. To bette…
Key point analysis is the task of extracting a set of concise and high-level statements from a given collection of arguments, representing the gist of these arguments. This paper presents our proposed approach to the Key Point Analysis shared task, collocated with the 8th Workshop on Argument Mining. The approach integrates two complementary components. One component employs contrastive learning via a siamese neural network for matching arguments to key points; the other is a graph-based extractive summarization model for generating key points. In both automatic and manual evaluation, our appr…
Understanding a medical conversation between a patient and a physician poses a unique natural language understanding challenge since it combines elements of standard open ended conversation with very domain specific elements that require expertise and medical knowledge. Summarization of medical conversations is a particularly important aspect of medical conversation understanding since it addresses a very real need in medical practice: capturing the most important aspects of a medical encounter so that they can be used for medical decision making and subsequent follow ups. In this paper we pre…
Zhejiang University（浙江大学）；IBM Research（IBM研究院）；Squirrel AI Learning（松鼠AI）
Contrastive Learning has emerged as a powerful representation learning method and facilitates various downstream tasks especially when supervised data is limited. How to construct efficient contrastive samples through data augmentation is key to its success. Unlike vision tasks, the data augmentation method for contrastive learning has not been investigated sufficiently in language tasks. In this paper, we propose a novel approach to construct contrastive samples for language tasks using text summarization. We use these samples for supervised contrastive learning to gain better text representa…
We study generating abstractive summaries that are faithful and factually consistent with the given articles. A novel contrastive learning formulation is presented, which leverages both reference summaries, as positive training data, and automatically generated erroneous summaries, as negative training data, to train summarization systems that are better at distinguishing between them. We further design four types of strategies for creating negative samples, to resemble errors made commonly by two state-of-the-art models, BART and PEGASUS, found in our new human annotations of summary errors. …
We develop the few-shot continual learning task from first principles and hypothesize an evolutionary motivation and mechanism of action for executive function as a contrastive value policy which resamples and relabels perception data via hindsight summarization to minimize attended prediction error, similar to an online prompt engineering problem. This is made feasible by the use of a memory policy and a pretrained network with inductive biases for a grammar of learning and is trained to maximize evolutionary survival. We show how this model of executive function can be used to implement hypo…
Medical conversation summarization is integral in capturing information gathered during interactions between patients and physicians. Summarized conversations are used to facilitate patient hand-offs between physicians, and as part of providing care in the future. Summaries, however, can be time-consuming to produce and require domain expertise. Modern pre-trained NLP models such as PEGASUS have emerged as capable alternatives to human summarization, reaching state-of-the-art performance on many summarization benchmarks. However, many downstream tasks still require at least moderately sized da…
Objective: The aim of this paper is to survey the recent work in medical documents summarization. Background: During the last decade, documents summarization got increasing attention by the AI research community. More recently it also attracted the interest of the medical research community as well, due to the enormous growth of information that is available to the physicians and researchers in medicine, through the large and growing number of published journals, conference proceedings, medical sites and portals on the World Wide Web, electronic medical records, etc. Methodology: This survey g…
We propose DeepChannel, a robust, data-efficient, and interpretable neural model for extractive document summarization. Given any document-summary pair, we estimate a salience score, which is modeled using an attention-based deep neural network, to represent the salience degree of the summary for yielding the document. We devise a contrastive training strategy to learn the salience estimation network, and then use the learned salience score as a guide and iteratively extract the most salient sentences from the document as our generated summary. In experiments, our model not only achieves state…
In this paper, we present a conceptually simple while empirically powerful framework for abstractive summarization, SimCLS, which can bridge the gap between the learning objective and evaluation metrics resulting from the currently dominated sequence-to-sequence learning framework by formulating text generation as a reference-free evaluation problem (i.e., quality estimation) assisted by contrastive learning. Experimental results show that, with minor modification over existing top-scoring systems, SimCLS can improve the performance of existing top-performing models by a large margin. Particul…
Northeastern University（东北大学）；Allen Institute for AI（艾伦人工智能研究所）
To assess the effectiveness of any medical intervention, researchers must conduct a time-intensive and highly manual literature review. NLP systems can help to automate or assist in parts of this expensive process. In support of this goal, we release MS^2 (Multi-Document Summarization of Medical Studies), a dataset of over 470k documents and 20k summaries derived from the scientific literature. This dataset facilitates the development of systems that can assess and aggregate contradictory evidence across multiple studies, and is the first large-scale, publicly available multi-document summariz…
Indian Institute of Technology Patna（印度理工学院巴特那分校）；University of Innsbruck（因斯布鲁克大学）
The internet has had a dramatic effect on the healthcare industry, allowing documents to be saved, shared, and managed digitally. This has made it easier to locate and share important data, improving patient care and providing more opportunities for medical studies. As there is so much data accessible to doctors and patients alike, summarizing it has become increasingly necessary - this has been supported through the introduction of deep learning and transformer-based networks, which have boosted the sector significantly in recent years. This paper gives a comprehensive survey of the current t…
Encoder-decoder models have achieved remarkable success in abstractive text summarization, which aims to compress one or more documents into a shorter version without the loss of the essential content. Unfortunately, these models mostly suffer a discrepancy between training and inference, i.e., the exposure bias problem. During the training stage, with teacher forcing these models are optimized to maximize the likelihood of the gold summary given the gold summary tokens as input to the decoder, while at inference the given tokens are replaced by the generated tokens. Consequently, low-quality …
