Atomistic simulations of the molecular dynamics/statics kind are regularly used to study small scale plasticity. Contemporary simulations are performed with tens to hundreds of millions of atoms, with snapshots of these configurations written out at regular intervals for further analysis. Continuum scale constitutive models for material behavior can benefit from information on the atomic scale, in particular in terms of the deformation mechanisms, the accommodation of the total strain and partitioning of stress and strain fields in individual grains. In this work we develop a methodology using statistical data mining and machine learning algorithms to automate the analysis of continuum field variables in atomistic simulations. We focus on three important field variables: total strain, elastic strain and microrotation. Our results show that the elastic strain in individual grains exhibits a unimodal log-normal distribution, whilst the total strain and microrotation fields evidence a multimodal distribution. The peaks in the distribution of total strain are identified with a Gaussian mixture model and methods to circumvent overfitting problems are presented. Subsequently, we evaluate the identified peaks in terms of deformation mechanisms in a grain, which e.g., helps to quantify the strain for which individual deformation mechanisms are responsible. The overall statistics of the distributions over all grains are an important input for higher scale models, which ultimately also helps to be able to quantitatively discuss the implications for information transfer to phenomenological models.
Progress in the development of coupled atomistic-continuum methods for simulations of critical dynamic material behavior has been hampered by a spurious wave reflection problem at the atomistic-continuum interface. This problem is mainly caused by the difference in material descriptions between the atomistic and continuum models, which results in a mismatch in phonon dispersion relations. In this work, we introduce a new method based on atomistic dynamics of lattice coupled with a concurrent atomistic-continuum method to enable a full phonon representation in the continuum description. This th…
A new class of matching condition between the atomistic and continuum regions is presented for the multi-scale modeling of crystals. They ensure the accurate passage of large scale information between the atomistic and continuum regions and at the same time minimize the reflection of phonons at the interface. These matching conditions can be made adaptive if we choose appropriate weight functions. Applications to dislocation dynamics and friction between two-dimensional atomically flat crystal surfaces are described.
We present a coupled atomistic-continuum method for the modeling of defects and interface dynamics of crystalline materials. The method uses atomistic models such as molecular dynamics near defects and interfaces, and continuum models away from defects and interfaces. We propose a new class of matching conditions between the atomistic and continuum regions. These conditions ensure the accurate passage of large scale information between the atomistic and continuum regions and at the same time minimize the reflection of phonons at the atomistic-continuum interface. They can be made adaptive if w…
This paper the utilizes atomistic-continuum mechanics (ACM) to investigate the mechanical properties of single-walled carbon nanotubes (SWCNTs). By establishing a linkage between structural mechanics and molecular mechanics, not only the Young's moduli could be obtained but also the modal analysis could be achieved. In addition, according to atomistic-continuum mechanics and finite element method, an effective atomistic-continuum model is constructed to investigate the above two mechanical properties of SWCNTs with affordable computational time by personal computers. The validity of the result…
Coupled atomistic-continuum methods can describe large domains and model dynamic material behavior for a much lower computational cost than traditional atomistic techniques. However, these multiscale frameworks suffer from wave reflections at the atomistic-continuum interfaces due to the numerical discrepancy between the fine-scaled and coarse-scaled models. Such reflections are non-physical and may lead to unfavorable outcomes such as artificial heating in the atomistic region. In this work, we develop a technique to allow the full spectrum of phonons to be incorporated into the coarse-scaled…
We discuss the roles of continuum linear elasticity and atomistic calculations in determining the formation volume and the strain energy of formation of a point defect in a crystal. Our considerations bear special relevance to defect formation under stress. The elasticity treatment is based on the Green's function solution for a center of contraction or expansion in an anisotropic solid. It makes possible the precise definition of a formation volume tensor and leads to an extension of Eshelby's result for the work done by an external stress during the transformation of a continuum inclusion (P…
Despite their success in microscale modeling of materials, atomistic methods are still limited by short time scales, small domain sizes, and high strain rates. Multiscale formulations can capture the continuum-level response of solids over longer runtimes, but using such schemes to model highly dynamic, nonlinear phenomena is very challenging and an active area of research. In this work, we develop novel techniques within the concurrent atomistic-continuum multiscale framework to simulate shock wave propagation through a two-dimensional, single-crystal lattice. The technique is described in de…
A novel atomistic-continuum method (ACM) based on finite element method (FEM) is proposed to numerically simulate the nano-scaled Poisson's ratio and Young's modulus effect of Lithium (Li) body-centered cubic (BCC) structure. The potential energy between Li atoms is described by the Morse potential function [1]. The pre-force effect will be discussed due to the different Li lattice length between experimental lattice constant and diatom distance from Morse function. Moreover, the size effect of the nano-scaled Li cluster will be introduced.
This work presents recent the progress in the development of the Concurrent Atomistic-Continuum (CAC) method for coarse-grained space- and time-resolved atomistic simulations of phonon transport. Application examples, including heat pulses propagating across grain boundaries and phase interfaces, as well as the interactions between phonons and moving dislocations, are provided to demonstrate the capabilities of CAC. The simulation results provide visual evidence and reveal the underlying physics of a variety of phenomena including: phonon focusing, wave interference, dislocation drag, interfac…
In this paper, a unified nonlocal rational continuum enrichment technique is presented for improving the dispersive characteristics of some well known classical continuum equations on the basis of atomistic dispersion relations. This type of enrichment can be useful in a wide range of mechanical problems such as localization of strain and damage in many quasibrittle structures, size effects in microscale elastoplasticity, and multiscale modeling of materials. A novel technique of transforming a discrete differential expression into an exact equivalent rational continuum derivative form is deve…
MD simulations of the non-equilibrium melting of aluminum are performed both with and without accounting of the electronic subsystem. A continuum model of melting is purposed basing on the obtained MD results, in which the current phase state is described in terms of fields of concentration and size of melting sites. Growth equation for melting areas is derived from the heat fluxes analysis. Nucleation equation for melting sites is formulated basing on the thermofluctuational approach. The method of determination of the model coefficients with using the MD simulation results is purposed. The c…
Fast and accurate quasi-atom method for simultaneous atomistic and continuum simulation of solids
Skolkovo Institute of Science and Technology（斯克尔科沃科学与技术研究所）；Schmidt Institute of Physics of the Earth of the Russian Academy of Sciences B. Gruzinskaya str., 10, bld. 1, Moscow, 123242, Russia（俄罗斯科学院地球物理施密特研究所）；School of Computing and Mathematical Sciences（计算与数学科学学院）；University of Leicester（莱斯特大学）
Atomistic simulations are used to test the equations of continuum contact mechanics in nanometer scale contacts. Nominally spherical tips, made by bending crystals or cutting crystalline or amorphous solids, are pressed into a flat, elastic substrate. The normal displacement, contact radius, stress distribution, friction and lateral stiffness are examined as a function of load and adhesion. The atomic scale roughness present on any tip made of discrete atoms is shown to have profound effects on the results. Contact areas, local stresses, and the work of adhesion change by factors of two to fou…
A finite-deformation crystal-elasticity membrane model for Transition Metal Dichalcogenide (TMD) monolayers is presented. Monolayer TMDs are multi-atom-thick two-dimensional (2D) crystalline membranes having atoms arranged in three parallel surfaces. In the present formulation, the deformed configuration of a TMD-membrane is represented through the deformation map of its middle surface and two stretches normal to the middle surface. Crystal-elasticity based kinematic rules are employed to express the deformed bond lengths and bond angles of TMDs in terms of the continuum strains. The continuum…
We devise automated workflows for the calculation of Helmholtz and Gibbs free energies and their temperature and pressure dependence and provide the corresponding computational tools. We employ non-equilibrium thermodynamics for evaluating the free energy of solid and liquid phases at a given temperature and reversible scaling for computing free energies over a wide range of temperatures, including the direct integration of $P$-$T$ coexistence lines. By changing the chemistry and the interatomic potential, alchemical and upscaling free energy calculations are possible. Several examples illustr…
Neural operator accelerated atomistic to continuum concurrent multiscale simulations of viscoelasticity
National Center for Computational Sciences, Oak Ridge National Laboratory（橡树岭国家实验室计算科学国家中心）；Department of Engineering, University of Cambridge（剑桥大学工程系）
We study the behavior of atomistic models in general dimensions under uniaxial tension and investigate the system for critical fracture loads. We rigorously prove that in the discrete-to-continuum limit the minimal energy satisfies a particular cleavage law with quadratic response to small boundary displacements followed by a sharp constant cut-off beyond some critical value. Moreover, we show that the minimal energy is attained by homogeneous elastic configurations in the subcritical case and that beyond critical loading cleavage along specific crystallographic hyperplanes is energetically fa…
A two-dimensional atomic mass spring system is investigated for critical fracture loads and its crack path geometry. We rigorously prove that, in the discrete-to-continuum limit, the minimal energy of a crystal under uniaxial tension leads to a universal cleavage law and energy minimizers are either homogeneous elastic deformations or configurations that are completely cracked and do not store elastic energy. Beyond critical loading, the specimen generically cleaves along a unique optimal crystallographic hyperplane. For specific symmetric crystal orientations, however, cleavage might fail. In…
Starting from a particle system with short-range interactions, we derive a continuum model for the bending, torsion, and brittle fracture of inextensible rods moving in three-dimensional space. As the number of particles tends to infinity, it is assumed that the rod's thickness is of the same order as the interatomic distance. Fracture energy in the $Γ$-limit is expressed by an implicit cell formula, which covers different modes of fracture, including (complete) cracks, folds and torsional cracks. In special cases, the cell formula can be significantly simplified. Our approach applies e.g. to …
On the basis of ab initio quantum mechanics (QM) calculation, the obtained electron heat capacity is implemented into energy equation of electron subsystem in two temperature model (TTM). Upon laser irradiation on the copper film, energy transfer from the electron subsystem to the lattice subsystem is modeled by including the electron-phonon coupling factor in molecular dynamics (MD) and TTM coupled simulation. The results show temperature and thermal melting difference between the QM-MD-TTM integrated simulation and pure MD-TTM coupled simulation. The successful construction of the QM-MD-TTM …
In this work we present a comparison of multiband k.p-models, the effective bond-orbital approach, and an empirical tight-binding model to calculate the electronic structure for the example of a truncated pyramidal GaN/AlN self-assembled quantum dot with a zincblende structure. For the system under consideration, we find a very good agreement between the results of the microscopic models and the 8-band k.p-formalism, in contrast to a 6+2-band k.p-model, where conduction band and valence band are assumed to be decoupled. This indicates a surprisingly strong coupling between conduction and valen…
High entropy alloys (HEAs) are a class of novel materials that exhibit superb engineering properties. It has been demonstrated by extensive experiments and first principles/atomistic simulations that short-range order in the atomic level randomness strongly influences the properties of HEAs. In this paper, we derive stochastic continuum models for HEAs with short-range order from atomistic models. A proper continuum limit is obtained such that the mean and variance of the atomic level randomness together with the short-range order described by a characteristic length are kept in the process fr…
We present a multiscale atomistic-to-continuum method for ionic crystals with defects. Defects often play a central role in ionic and electronic solids, not only to limit reliability, but more importantly to enable the functionalities that make these materials of critical importance. Examples include solid electrolytes that conduct current through the motion of charged point defects, and complex oxide ferroelectrics that display multifunctionality through the motion of domain wall defects. Therefore, it is important to understand the structure of defects and their response to electrical and me…
The design of next-generation alloys through the Integrated Computational Materials Engineering (ICME) approach relies on multi-scale computer simulations to provide thermodynamic properties when experiments are difficult to conduct. Atomistic methods such as Density Functional Theory (DFT) and Molecular Dynamics (MD) have been successful in predicting properties of never before studied compounds or phases. However, uncertainty quantification (UQ) of DFT and MD results is rarely reported due to computational and UQ methodology challenges. Over the past decade, studies have emerged that mitigat…
The interaction of screw dislocations with an applied stress is studied using atomistic simulations in conjunction with a continuum treatment of the role played by the far field boundary condition. A finite cell of atoms is used to consider the response of dislocations to an applied stress and this introduces an additional force on the dislocation due to the presence of the boundary. Continuum mechanics is used to calculate the boundary force which is subsequently accounted for in the equilibrium condition for the dislocation. Using this formulation, the lattice resistance curve and the associ…
Magnetic Ordering in Moiré Graphene Multilayers from a Continuum Hartree+U Approach
Imperial College London（帝国理工学院）；Università degli Studi di Trieste（的里雅斯特大学）；CNR-IOM–Istituto Officina dei Materiali, National Research Council of Italy（意大利国家研究委员会材料工厂研究所）；Universität Würzburg（维尔茨堡大学）；Max Planck Institute for the Structure and Dynamics of Matter（马普物质结构与动力学研究所）；RWTH Aachen University（亚琛工业大学）
The dislocation core is an important region as it controls many important properties of materials. Elasticity breaks down in the core and the stress, force, and energy diverge at the dislocation line. We consider three commonest methods employed in Discrete Dislocation Dynamics (DDD) simulations to eliminate these singularities: (1) considering a cutoff parameter, (2) spreading the Burgers vector (CAWB theory), and (3) using gradient elasticity. Each of these methods includes an extra length parameter to regularize the elastic fields. In this article, we show that these regularization paramete…
We present an atomistic-continuum model to simulate ultrashort laser-induced melting processes in semiconductor solids on the example of silicon. The kinetics of transient non-equilibrium phase transition mechanisms is addressed with a Molecular Dynamics method at atomic level, whereas the laser light absorption, strong generated electron-phonon non-equilibrium, fast diffusion and heat conduction due to photo-excited free carriers are accounted for in the continuum. We give a detailed description of the model, which is then applied to study the mechanism of short laser pulse melting of free st…
Mixed atomistic and continuum methods offer the possibility of carrying out simulations of material properties at both larger length scales and longer times than direct atomistic calculations. The quasi-continuum method links atomistic and continuum models through the device of the finite element method which permits a reduction of the full set of atomistic degrees of freedom. The present paper gives a full description of the quasicontinuum method, with special reference to the ways in which the method may be used to model crystals with more than a single grain. The formulation is validated in…
Some issues that arise when modeling elastic energy for binary alloys are discussed within the context of a Keating model and density functional calculations. The Keating model is based on atomistic modeling of elastic interactions in binary alloy using harmonic springs with species dependent equilibrium lengths. It is demonstrated that the continuum limit for the strain field are the usual equations of linear elasticity for alloys and that they correctly capture the coarse-grained displacement field. In addition, it is established that Euler-Lagrange equation of the continuum limit of the ela…
An {\it atomistic} approach allowing an accurate and efficient treatment of depolarizing energy and field in {\it any} low-dimensional ferroelectric structure is developed. Application of this approach demonstrates the limits of the widely used continuum model (even) for simple test cases. Moreover, implementation of this approach within a first-principles-based model reveals an unusual phase transition -- from a state exhibiting a spontaneous polarization to a phase associated with a toroid moment of polarization -- in a ferroelectric nanodot for a critical value of the depolarizing field.
We present simulations of the dynamic and temperature dependent behavior of Micro-Electro-Mechanical Systems (MEMS) by utilizing recently developed parallel codes which enable a coupling of length scales. The novel techniques used in this simulation accurately model the behavior of the mechanical components of MEMS down to the atomic scale. We study the vibrational behavior of one class of MEMS devices: micron-scale resonators made of silicon and quartz. The algorithmic and computational avenue applied here represents a significant departure from the usual finite element approach based on cont…
Energetically the single sheet of graphite (graphene) is more stable than the nanotube. The energy difference between the two systems can be directly related to the strain energy involved in rolling up the graphene sheet to form the nanotube. We have carried out first principle electronic structure calculations and evaluated the strain energy as a function of the nanotube radius. The dependence of the strain energy on the diameter of the nanotube has been found by several groups to be welldescribed by a continuum elasticity model. We attempt to examine why this is the case and show where atomi…
Crystal lattice deformations can be described microscopically by explicitly accounting for the position of atoms or macroscopically by continuum elasticity. In this work, we report on the description of continuous elastic fields derived from an atomistic representation of crystalline structures that also include features typical of the microscopic scale. Analytic expressions for strain components are obtained from the complex amplitudes of the Fourier modes representing periodic lattice positions, which can be generally provided by atomistic modeling or experiments. The magnitude and phase of …
The "flexible boundary condition" method, introduced by Sinclair and coworkers in the 1970s, remains among the most popular methods for simulating isolated two-dimensional crystalline defects, embedded in an effectively infinite atomistic domain. In essence, the method can be characterized as a domain decomposition method which iterates between a local anharmonic and a global harmonic problem, where the latter is solved by means of the lattice Green function of the ideal crystal. This local/global splitting gives rise to tremendously improved convergence rates over related alternating Schwarz …
Max-Planck-Institut für Eisenforschung（马克斯·普朗克钢铁研究所）；Technische Universität Darmstadt（达姆施塔特工业大学）；DeepMetis
The elastic properties of materials derive from their electronic and atomic nature. However, simulating bulk materials fully at these scales is not feasible, so that typically homogenized continuum descriptions are used instead. A seamless and lossless transition of the constitutive description of the elastic response of materials between these two scales has been so far elusive. Here we show how this problem can be overcome by using Artificial Intelligence (AI). A Convolutional Neural Network (CNN) model is trained, by taking the structure image of a nanoporous material as input and the corre…
We describe the \texttt{Imeall} package for the calculation and indexing of atomistic properties of grain boundaries in materials. The package provides a structured database for the storage of atomistic structures and their associated properties, equipped with a programmable application interface to interatomic potential calculators. The database adopts a general indexing system that allows storing arbitrary grain boundary structures for any crystalline material. The usefulness of the \texttt{Imeall} package is demonstrated by computing, storing, and analysing relaxed grain boundary structures…
Are the cohesive laws of interfaces sufficient for modelling fracture in polycrystals using the cohesive zone model? We examine this question by comparing a fully atomistic simulation of a silicon polycrystal to a finite element simulation with a similar overall geometry. The cohesive laws used in the finite element simulation are measured atomistically. We describe in detail how to convert the output of atomistic grain boundary fracture simulations into the piecewise linear form needed by a cohesive zone model. We discuss the effects of grain boundary microparameters (the choice of section of…
We develop a long-time moving window framework using Molecular Dynamics (MD) to model shock wave propagation through a one-dimensional chain of atoms. The domain is divided into a purely atomistic "window" region containing the shock wave flanked by boundary or "continuum" regions on either end. The dynamics of the window atoms are governed by classic MD equations of motion while continuum shock conditions are applied to the continuum atoms. Spurious wave reflections are removed by employing a damping band method using the Langevin thermostat applied locally to the continuum region. The moving…
Oxygen vacancies have been identified to play an important role in accelerating grain growth in polycrystalline perovskite-oxide ceramics. In order to advance the fundamental understanding of growth mechanisms at the atomic scale, classical atomistic simulations were carried out to investigate the atomistic structures and oxygen vacancy formation energies at grain boundaries in the prototypical perovskite-oxide material SrTiO$_3$. In this work, we focus on two symmetric tilt grain boundaries, namely $Σ$5(310)[001] and $Σ$5(210)[001]. A one-dimensional continuum model is adapted to determine th…
From their birth in the manufacturing process, materials inherently contain defects that affect the mechanical behavior across multiple length and time-scales, including vacancies, dislocations, voids and cracks. Understanding, modeling, and real-time simulation of the underlying stochastic micro-structure defect evolution is therefore vital towards multi-scale coupling and propagating numerous sources of uncertainty from atomistic to eventually aging continuum mechanics. We develop a graph-based surrogate model of dislocation glide for computation of dislocation mobility. We model an edge dis…
Atomistic computations of the Peierls stress in fcc metals are relatively scarce. By way of contrast, there are many more atomistic computations for bcc metals, as well as mixed discrete-continuum computations of the Peierls-Nabarro type for fcc metals. One of the reasons for this is the low Peierls stresses in fcc metals. Because atomistic computations of the Peierls stress take place in finite simulation cells, image forces caused by boundaries must either be relaxed or corrected for if system size independent results are to be obtained. One of the approaches that has been developed for trea…
Ultrafast magnetization dynamics probes the most fundamental properties of magnetic materials, exploring questions about the fundamental interactions responsible for magnetic phenomena. Thermal effects are known to be extremely important for laser-induced dynamics in metallic systems, but the dynamics of topological magnetic structures are little understood. Here we apply a massively parallel atomistic spin dynamics simulation to study the response of a permalloy vortex to a 50 fs laser pulse. We find that macroscopically the short timescale dynamics are indistinguishable from the bulk, but th…
Structure and thermodynamics of crystalline membranes are characterized by the long wavelength behavior of the normal-normal correlation function G(q). We calculate G(q) by Monte Carlo and Molecular Dynamics simulations for a quasi-harmonic model potential and for a realistic potential for graphene. To access the long wavelength limit for finite-size systems (up to 40000 atoms) we introduce a Monte Carlo sampling based on collective atomic moves (wave moves). We find a power-law behaviour $G(q)\propto q^{-2+η}$ with the same exponent $η\approx 0.85$ for both potentials. This finding supports, …
Various fields such as mechanical engineering, materials science, etc., have seen a widespread use of linear elastic fracture mechanics (LEFM) at the continuum scale. LEFM is also routinely applied to the atomic scale. However, its applicability at this scale remains less well studied, with most studies focusing on non-linear elastic effects. Using a harmonic (snapping spring) nearest-neighbor potential which provides the closest match to LEFM on a discrete lattice, we show that the discrete nature of an atomic lattice leads to deviations from the LEFM displacement field during energy minimiza…
Material properties controlled by evolving defect structures, such as mechanical response, often involve processes spanning many length and time scales which cannot be modeled using a single approach. We present a variety of new results that demonstrate the ability of phase field crystal (PFC) models to describe complex defect evolution phenomena on atomistic length scales and over long, diffusive time scales. Primary emphasis is given to the unification of conservative and non- conservative dislocation creation mechanisms in three-dimensional FCC and BCC materials. These include Frank-Read-ty…
