Over-smoothing is a severe problem which limits the depth of Graph Convolutional Networks. This article gives a comprehensive analysis of the mechanism behind Graph Convolutional Networks and the over-smoothing effect. The article proposes an upper bound for the occurrence of over-smoothing, which offers insight into the key factors behind over-smoothing. The results presented in this article successfully explain the feasibility of several algorithms that alleviate over-smoothing.
Huazhong University of Science and Technology（华中科技大学）；Nanyang Technological University（南洋理工大学）
Graph convolutional network (GCN) is now an effective tool to deal with non-Euclidean data, such as social networks in social behavior analysis, molecular structure analysis in the field of chemistry, and skeleton-based action recognition. Graph convolutional kernel is one of the most significant factors in GCN to extract nodes' feature, and some improvements of it have reached promising performance theoretically and experimentally. However, there is limited research about how exactly different data types and graph structures influence the performance of these kernels. Most existing methods us…
Guangdong University of Finance & Economics（广东财经大学）
Graph convolutional networks (GCNs) have achieved remarkable learning ability for dealing with various graph structural data recently. In general, deep GCNs do not work well since graph convolution in conventional GCNs is a special form of Laplacian smoothing, which makes the representation of different nodes indistinguishable. In the literature, multi-scale information was employed in GCNs to enhance the expressive power of GCNs. However, over-smoothing phenomenon as a crucial issue of GCNs remains to be solved and investigated. In this paper, we propose two novel multi-scale GCN frameworks b…
Beijing National Research Center for Information Science and Technology (BNRist)（北京信息科学与技术国家研究中心）；Tsinghua University（清华大学）；Tencent AI Lab（腾讯人工智能实验室）
Increasing the depth of GCN, which is expected to permit more expressivity, is shown to incur performance detriment especially on node classification. The main cause of this lies in over-smoothing. The over-smoothing issue drives the output of GCN towards a space that contains limited distinguished information among nodes, leading to poor expressivity. Several works on refining the architecture of deep GCN have been proposed, but it is still unknown in theory whether or not these refinements are able to relieve over-smoothing. In this paper, we first theoretically analyze how general GCNs act …
Graph Convolutional Networks (GCNs) are known to suffer from performance degradation as the number of layers increases, which is usually attributed to over-smoothing. Despite the apparent consensus, we observe that there exists a discrepancy between the theoretical understanding of over-smoothing and the practical capabilities of GCNs. Specifically, we argue that over-smoothing does not necessarily happen in practice, a deeper model is provably expressive, can converge to global optimum with linear convergence rate, and achieve very high training accuracy as long as properly trained. Despite b…
Learning useful node and graph representations with graph neural networks (GNNs) is a challenging task. It is known that deep GNNs suffer from over-smoothing where, as the number of layers increases, node representations become nearly indistinguishable and model performance on the downstream task degrades significantly. To address this problem, we propose deeply-supervised GNNs (DSGNNs), i.e., GNNs enhanced with deep supervision where representations learned at all layers are used for training. We show empirically that DSGNNs are resilient to over-smoothing and can outperform competitive bench…
Recent works reveal that feature or label smoothing lies at the core of Graph Neural Networks (GNNs). Concretely, they show feature smoothing combined with simple linear regression achieves comparable performance with the carefully designed GNNs, and a simple MLP model with label smoothing of its prediction can outperform the vanilla GCN. Though an interesting finding, smoothing has not been well understood, especially regarding how to control the extent of smoothness. Intuitively, too small or too large smoothing iterations may cause under-smoothing or over-smoothing and can lead to sub-optim…
Harbin Institute of Technology（哈尔滨工业大学）；Qingdao University of Science and Technology（青岛科技大学）
In designing and applying graph neural networks, we often fall into some optimization pitfalls, the most deceptive of which is that we can only build a deep model by solving over-smoothing. The fundamental reason is that we do not understand how graph neural networks work. Stress graph drawing can offer a unique viewpoint to message iteration in the graph, such as the root of the over-smoothing problem lies in the inability of graph models to maintain an ideal distance between nodes. We further elucidate the trigger conditions of over-smoothing and propose Stress Graph Neural Networks. By intr…
University of Chinese Academy of Sciences（中国科学院大学）；Key Laboratory of Big Data Mining and Knowledge Management, CAS（中国科学院大数据挖掘与知识管理重点实验室）
The over-smoothing problem is an obstacle of developing deep graph neural network (GNN). Although many approaches to improve the over-smoothing problem have been proposed, there is still a lack of comprehensive understanding and conclusion of this problem. In this work, we analyze the over-smoothing problem from the Markov chain perspective. We focus on message passing of GNN and first establish a connection between GNNs and Markov chains on the graph. GNNs are divided into two classes of operator-consistent and operator-inconsistent based on whether the corresponding Markov chains are time-ho…
Node features of graph neural networks (GNNs) tend to become more similar with the increase of the network depth. This effect is known as over-smoothing, which we axiomatically define as the exponential convergence of suitable similarity measures on the node features. Our definition unifies previous approaches and gives rise to new quantitative measures of over-smoothing. Moreover, we empirically demonstrate this behavior for several over-smoothing measures on different graphs (small-, medium-, and large-scale). We also review several approaches for mitigating over-smoothing and empirically te…
Graph convolutional networks (GCNs) have been proved to be very practical to handle various graph-related tasks. It has attracted considerable research interest to study deep GCNs, due to their potential superior performance compared with shallow ones. However, simply increasing network depth will, on the contrary, hurt the performance due to the over-smoothing problem. Adding residual connection is proved to be effective for learning deep convolutional neural networks (deep CNNs), it is not trivial when applied to deep GCNs. Recent works proposed an initial residual mechanism that did allevia…
Beijing Institute of Technology（北京理工大学）；Renmin University of China（中国人民大学）
Graph convolutional networks (GCNs) have achieved promising performance on various graph-based tasks. However they suffer from over-smoothing when stacking more layers. In this paper, we present a quantitative study on this observation and develop novel insights towards the deeper GCN. First, we interpret the current graph convolutional operations from an optimization perspective and argue that over-smoothing is mainly caused by the naive first-order approximation of the solution to the optimization problem. Subsequently, we introduce two metrics to measure the over-smoothing on node-level tas…
Hong Kong University of Science and Technology（香港科技大学）；The University of Hong Kong（香港大学）；Huawei Noah’s Ark Lab（华为诺亚方舟实验室）；Sun Yat-sen University（中山大学）
Recently over-smoothing phenomenon of Transformer-based models is observed in both vision and language fields. However, no existing work has delved deeper to further investigate the main cause of this phenomenon. In this work, we make the attempt to analyze the over-smoothing problem from the perspective of graph, where such problem was first discovered and explored. Intuitively, the self-attention matrix can be seen as a normalized adjacent matrix of a corresponding graph. Based on the above connection, we provide some theoretical analysis and find that layer normalization plays a key role in…
UniGAP: A Universal and Adaptive Graph Upsampling Approach to Mitigate Over-Smoothing in Node Classification Tasks
The Hong Kong University of Science and Technology (Guangzhou)（香港科学与技术大学（广州））；Shanghai Artificial Intelligence Laboratory（上海人工智能实验室）；Rutgers University（罗格斯大学）
Rutgers University - New Brunswick（罗格斯大学-新不伦瑞克分校）；Department of Computer Science（计算机科学系）
Applying Global Self-attention (GSA) mechanism over features has achieved remarkable success on Convolutional Neural Networks (CNNs). However, it is not clear if Graph Convolutional Networks (GCNs) can similarly benefit from such a technique. In this paper, inspired by the similarity between CNNs and GCNs, we study the impact of the Global Self-attention mechanism on GCNs. We find that consistent with the intuition, the GSA mechanism allows GCNs to capture feature-based vertex relations regardless of edge connections; As a result, the GSA mechanism can introduce extra expressive power to the G…
Linearized Graph Neural Networks (GNNs) have attracted great attention in recent years for graph representation learning. Compared with nonlinear Graph Neural Network (GNN) models, linearized GNNs are much more time-efficient and can achieve comparable performances on typical downstream tasks such as node classification. Although some linearized GNN variants are purposely crafted to mitigate ``over-smoothing", empirical studies demonstrate that they still somehow suffer from this issue. In this paper, we instead relate over-smoothing with the vanishing gradient phenomenon and craft a gradient-…
Xi’an Jiaotong University（西安交通大学）；University of Washington（华盛顿大学）；Ant Group（蚂蚁集团）
Current Graph Neural Networks (GNNs) suffer from the over-smoothing problem, which results in indistinguishable node representations and low model performance with more GNN layers. Many methods have been put forward to tackle this problem in recent years. However, existing tackling over-smoothing methods emphasize model performance and neglect the over-smoothness of node representations. Additional, different approaches are applied one at a time, while there lacks an overall framework to jointly leverage multiple solutions to the over-smoothing challenge. To solve these problems, we propose Gr…
\emph{Over-fitting} and \emph{over-smoothing} are two main obstacles of developing deep Graph Convolutional Networks (GCNs) for node classification. In particular, over-fitting weakens the generalization ability on small dataset, while over-smoothing impedes model training by isolating output representations from the input features with the increase in network depth. This paper proposes DropEdge, a novel and flexible technique to alleviate both issues. At its core, DropEdge randomly removes a certain number of edges from the input graph at each training epoch, acting like a data augmenter and …
University of Technology Sydney（悉尼科技大学）；University of New South Wales（新南威尔士大学）；Fudan University（复旦大学）
Modelling exchangeable relational data can be described by \textit{graphon theory}. Most Bayesian methods for modelling exchangeable relational data can be attributed to this framework by exploiting different forms of graphons. However, the graphons adopted by existing Bayesian methods are either piecewise-constant functions, which are insufficiently flexible for accurate modelling of the relational data, or are complicated continuous functions, which incur heavy computational costs for inference. In this work, we introduce a smoothing procedure to piecewise-constant graphons to form {\em smoo…
Tsinghua-Berkeley Shenzhen Institute, Tsinghua University（清华大学清华-伯克利深圳学院）
In recent years, hypergraph learning has attracted great attention due to its capacity in representing complex and high-order relationships. However, current neural network approaches designed for hypergraphs are mostly shallow, thus limiting their ability to extract information from high-order neighbors. In this paper, we show both theoretically and empirically, that the performance of hypergraph neural networks does not improve as the number of layers increases, which is known as the over-smoothing problem. To avoid this issue, we develop a new deep hypergraph convolutional network called De…
University of Maryland（马里兰大学）；Amazon（亚马逊）；Shanghai Jiao Tong University（上海交通大学）
For supervised learning with tabular data, decision tree ensembles produced via boosting techniques generally dominate real-world applications involving iid training/test sets. However for graph data where the iid assumption is violated due to structured relations between samples, it remains unclear how to best incorporate this structure within existing boosting pipelines. To this end, we propose a generalized framework for iterating boosting with graph propagation steps that share node/sample information across edges connecting related samples. Unlike previous efforts to integrate graph-based…
Renmin University of China（中国人民大学）；Fudan University（复旦大学）；Alibaba Group（阿里巴巴集团）
Graph convolutional networks (GCNs) are a powerful deep learning approach for graph-structured data. Recently, GCNs and subsequent variants have shown superior performance in various application areas on real-world datasets. Despite their success, most of the current GCN models are shallow, due to the {\em over-smoothing} problem. In this paper, we study the problem of designing and analyzing deep graph convolutional networks. We propose the GCNII, an extension of the vanilla GCN model with two simple yet effective techniques: {\em Initial residual} and {\em Identity mapping}. We provide theor…
Rakuten Institute of Technology, Rakuten Group, Inc.（乐天集团乐天技术研究所）；The University of Tokyo（东京大学）
Leveraging graphs on recommender systems has gained popularity with the development of graph representation learning (GRL). In particular, knowledge graph embedding (KGE) and graph neural networks (GNNs) are representative GRL approaches, which have achieved the state-of-the-art performance on several recommendation tasks. Furthermore, combination of KGE and GNNs (KG-GNNs) has been explored and found effective in many academic literatures. One of the main characteristics of GNNs is their ability to retain structural properties among neighbors in the resulting dense representation, which is usu…
A graph convolutional network (GCN) employs a graph filtering kernel tailored for data with irregular structures. However, simply stacking more GCN layers does not improve performance; instead, the output converges to an uninformative low-dimensional subspace, where the convergence rate is characterized by the graph spectrum -- this is the known over-smoothing problem in GCN. In this paper, we propose a sparse graph learning algorithm incorporating a new spectrum prior to compute a graph topology that circumvents over-smoothing while preserving pairwise correlations inherent in data. Specifica…
Harbin Institute of Technology（哈尔滨工业大学）；NetEase（网易）
Graph Convolutional Networks (GCNs) are powerful for processing graph-structured data and have achieved state-of-the-art performance in several tasks such as node classification, link prediction, and graph classification. However, it is inevitable for deep GCNs to suffer from an over-smoothing issue that the representations of nodes will tend to be indistinguishable after repeated graph convolution operations. To address this problem, we propose the Graph Partner Neural Network (GPNN) which incorporates a de-parameterized GCN and a parameter-sharing MLP. We provide empirical and theoretical ev…
Graph Neural Networks (GNNs) have achieved a lot of success with graph-structured data. However, it is observed that the performance of GNNs does not improve (or even worsen) as the number of layers increases. This effect has known as over-smoothing, which means that the representations of the graph nodes of different classes would become indistinguishable when stacking multiple layers. In this work, we propose a new simple, and efficient method to alleviate the effect of the over-smoothing problem in GNNs by explicitly using relations between node embeddings. Experiments on real-world dataset…
Graph Neural Networks (GNNs) have achieved a lot of success on graph-structured data. However, it is observed that the performance of graph neural networks does not improve as the number of layers increases. This effect, known as over-smoothing, has been analyzed mostly in linear cases. In this paper, we build upon previous results \cite{oono2019graph} to further analyze the over-smoothing effect in the general graph neural network architecture. We show when the weight matrix satisfies the conditions determined by the spectrum of augmented normalized Laplacian, the Dirichlet energy of embeddin…
We analyze graph smoothing with \emph{mean aggregation}, where each node successively receives the average of the features of its neighbors. Indeed, it has quickly been observed that Graph Neural Networks (GNNs), which generally follow some variant of Message-Passing (MP) with repeated aggregation, may be subject to the oversmoothing phenomenon: by performing too many rounds of MP, the node features tend to converge to a non-informative limit. In the case of mean aggregation, for connected graphs, the node features become constant across the whole graph. At the other end of the spectrum, it is…
The detection of retinal blood vessels, especially the changes of small vessel condition is the most important indicator to identify the vascular network of the human body. Existing techniques focused mainly on shape of the large vessels, which is not appropriate for the disconnected small and isolated vessels. Paying attention to the low contrast small blood vessel in fundus region, first time we proposed to combine graph based smoothing regularizer with the loss function in the U-net framework. The proposed regularizer treated the image as two graphs by calculating the graph laplacians on ve…
Peking University（北京大学）；Institute of Computational Social Science, Peking University (Qingdao)（北京大学（青岛）计算社会科学研究院）
Recently, graph neural networks (GNNs) have shown prominent performance in graph representation learning by leveraging knowledge from both graph structure and node features. However, most of them have two major limitations. First, GNNs can learn higher-order structural information by stacking more layers but can not deal with large depth due to the over-smoothing issue. Second, it is not easy to apply these methods on large graphs due to the expensive computation cost and high memory usage. In this paper, we present node-adaptive feature smoothing (NAFS), a simple non-parametric method that co…
Graph Convolutional Network (GCN) has achieved great success and has been applied in various fields including recommender systems. However, GCN still suffers from many issues such as training difficulties, over-smoothing, vulnerable to adversarial attacks, etc. Distinct from current GCN-based methods which simply employ GCN for recommendation, in this paper we are committed to build a robust GCN model for collaborative filtering. Firstly, we argue that recursively incorporating messages from different order neighborhood mixes distinct node messages indistinguishably, which increases the traini…
Shanghai Jiao Tong University（上海交通大学）；Chinese Academy of Sciences（中国科学院）
Most graph neural networks follow the message passing mechanism. However, it faces the over-smoothing problem when multiple times of message passing is applied to a graph, causing indistinguishable node representations and prevents the model to effectively learn dependencies between farther-away nodes. On the other hand, features of neighboring nodes with different labels are likely to be falsely mixed, resulting in the heterophily problem. In this work, we propose to order the messages passing into the node representation, with specific blocks of neurons targeted for message passing within sp…
Graph Neural Networks (GNNs) have achieved promising performance on a wide range of graph-based tasks. Despite their success, one severe limitation of GNNs is the over-smoothing issue (indistinguishable representations of nodes in different classes). In this work, we present a systematic and quantitative study on the over-smoothing issue of GNNs. First, we introduce two quantitative metrics, MAD and MADGap, to measure the smoothness and over-smoothness of the graph nodes representations, respectively. Then, we verify that smoothing is the nature of GNNs and the critical factor leading to over-…
Potsdam Institute for Climate Impact Research（波茨坦气候影响研究所）；Technical University of Berlin（柏林工业大学）；University of Illinois at Chicago（伊利诺伊大学芝加哥分校）；Berlin Institute for the Foundations of Learning and Data (BIFOLD)（柏林学习与数据基础研究所）；Northwestern Polytechnical University（西北工业大学）；Fudan University（复旦大学）；Humboldt University Berlin（柏林洪堡大学）
The Hong Kong Polytechnic University（香港理工大学）；ETH Zurich（苏黎世联邦理工学院）
Many interesting problems in machine learning are being revisited with new deep learning tools. For graph-based semisupervised learning, a recent important development is graph convolutional networks (GCNs), which nicely integrate local vertex features and graph topology in the convolutional layers. Although the GCN model compares favorably with other state-of-the-art methods, its mechanisms are not clear and it still requires a considerable amount of labeled data for validation and model selection. In this paper, we develop deeper insights into the GCN model and address its fundamental limits…
On the Trade-off between Over-smoothing and Over-squashing in Deep Graph Neural Networks
Télécom Paris - Institut Polytechnique de Paris（巴黎理工学院巴黎电信学院）；BLUAI；La Rochelle Université（拉罗谢尔大学）；Université Paris-Saclay（巴黎萨克雷大学）；CentraleSupélec（中央理工-高等电力学院）；Inria（法国国家信息与自动化研究所）
