With quenched disorder, we introduce two-dimensional active nematics suspended in an incompressible fluid. We write the coarse-grained hydrodynamic equations of motion for slow variables, viz. density, orientation and flow fields. The quenched disorder is introduced such that it interacts with the local orientation at every point with some strength. Disorder strength is tuned from zero to large values. We numerically study the defect dynamics and system's kinetics and find that the finite disorder slows the ordering. The presence of fluid induces large fluctuation in the orientation field, further disturbing the ordering. The large fluctuation in the orientation field due to the fluid is so dominant that it reduces the effect of the quenched disorder. We have also found that the disorder's effect is almost the same for both the contractile and extensile nature of active stresses in the system. This study can help {\color{black} to} understand the impact of quenched {\color{black} disorder} on the ordering kinetics of active gels with nematic interaction among the constituent objects.
A nematic liquid-crystal gel is a macroscopically homogeneous elastic medium with the rotational symmetry of a nematic liquid crystal. In this paper, we develop a general approach to the study of these gels that incorporates all underlying symmetries. After reviewing traditional elasticity and clarifying the role of broken rotational symmetries in both the reference space of points in the undistorted medium and the target space into which these points are mapped, we explore the unusual properties of nematic gels from a number of perspectives. We show how symmetries of nematic gels formed via s…
In this paper, we discuss the equilibrium phases and collapse transitions of a lyotropic nematic gel immersed in an isotropic solvent. A nematic gel consists of a cross-linked polymer network with rod-like molecules embedded in it. Upon decreasing the quality of the solvent, we find that a lyotropic nematic gel undergoes a discontinuous volume change accompanied by an isotropic-nematic transition. We also present phase diagrams that these systems may exhibit. In particular, we show that coexistence of two isotropic phases, of two nematic phases, or of an isotropic and a nematic phase can occur…
A spontaneous buckling transition in thin layers of monodomain nematic liquid crystalline gel was observed by polarized light microscopy. The coupling between the orientational ordering of liquid crystalline solvent and the translational ordering of crosslinked polymer backbones inside the nematic gel contributes to such buckling transition. As the nematic mesogens become more ordered when the gel is cooled down from a higher gelation temperature, the polymeric backbones tend to elongate along the direction parallel to the nematic director, which is perpendicular to the rigid glass surfaces in…
We study the fluctuations of a Brownian micro particle trapped with optical tweezers in a gelatin solution undergoing a fast local temperature quench below the sol-gel transition. Contrary to what was previously reported, we observe no anomalous fluctuations in the particle's position that could be interpreted in terms of an effective temperature. A careful analysis with ensemble averages shows only equilibrium-like properties for the fluctuations, even though the system is clearly aging. We also provide a detailed discussion on possible artifacts that could have been interpreted as an effecti…
We study numerically the rheological properties of a slab of active gel close o the isotropic-nematic transition. The flow behavior shows strong dependence on sample size, boundary conditions, and on the bulk constitutive curve, which, on entering the nematic phase, acquires an activity-induced discontinuity at the origin. The precursor of this within the metastable isotropic phase for contractile systems ({\em e.g.,} actomyosin gels) gives a viscosity divergence; its counterpart for extensile ({\em e.g.,} {\em B. subtilis}) suspensions admits instead a shear-banded flow with zero apparent vis…
The phase ordering kinetics of the two-dimensional uniaxial nematic has been studied using a Cell Dynamic Scheme. The system after quench from T=infinity was found to scale dynamically with an asymptotic growth law similar to that of two-dimensional O(2) model (quenched from above the Kosterlitz - Thouless transition temperature), i.e. L(t) ~ t/ln(t/t0 ^{1/2} (with nonuniversal time scale t0). We obtained the true asymptotic limit of the growth law by performing our simulation for sufficiently long time. The presence of topologically stable 1/2-disclination points is reflected in the observed …
We introduce a two-dimensional active nematic with quenched disorder. We write the coarse-grained hydrodynamic equations of motion for slow variables, viz. density, and orientation. Disorder strength is tuned from zero to large values. Results from the numerical solution of equations of motion as well as the calculation of two-point orientation correlation function using linear approximation show that the ordered steady-state follows a disorder-dependent crossover from quasi long-range order (QLRO) to short-range order (SRO). Such crossover is due to the pinning of +1/2 and -1/2 topological de…
When liquid-crystalline elastomers pass through the isotropic-nematic transition, the orientational order parameter and the elastic strain vary rapidly but smoothly, without the expected first-order discontinuity. This broadening of the phase transition is an important issue for applications of liquid-crystalline elastomers as actuators or artificial muscles. To understand this behavior, we develop a lattice model of liquid-crystalline elastomers, with local directors coupled to a global strain variable. In this model, we can consider either random-bond disorder (representing chemical heteroge…
I put forward a continuum theory for active nematic gels, defined as fluids or suspensions of orientable rodlike objects endowed with active dynamics, that is based on symmetry arguments and compatibility with thermodynamics. The starting point is our recent theory that models (passive) nematic liquid crystals as relaxing nematic elastomers. The interplay between viscoelastic response and active dynamics of the microscopic constituents is naturally taken into account. By contrast with standard theories, activity is not introduced as an additional term of the stress tensor, but it is added as a…
We present a density-functional study of a binary phase-separating mixture of soft core particles immersed in a random matrix of quenched soft core particles of larger size. This is a model for a binary polymer mixture immersed in a crosslinked rigid polymer network. Using the replica `trick' for quenched-annealed mixtures we derive an explicit density functional theory that treats the quenched species on the level of its one-body density distribution. The relation to a set of effective external potentials acting on the annealed components is discussed. We relate matrix-induced condensation in…
The solid nematic equivalent of the Fredericks transition is found to depend on a critical field rather than a critical voltage as in the classical case. This arises because director anchoring is principally to the solid rubbery matrix of the nematic gel rather than to the sample surfaces. Moreover, above the threshold field, we find a competition between quartic (soft) and conventional harmonic elasticity which dictates the director response. By including a small degree of initial director misorientation, the calculated field variation of optical anisotropy agrees well with the conoscopy meas…
In a nematic gel, the appearance of nematic order is accompanied by a spontaneous elongation of the gel parallel to the nematic director. If such a gel is made chiral, it has a tendency to form a cholesteric helical texture, in which local elongation of the gel parallel to the nematic director is suppressed due to the requirement of elastic compatibility. We show that a conical helix in which the director makes an oblique angle with respect to the helix axis serves as an energy minimizing compromise between the competing tendencies for elongation and twisting. We find the dependence of the hel…
We present a theoretical study of the equilibrium ordering in a 3D XY nematic system with quenched random disorder. Within this model, treated with the replica trick and Gaussian variational method, the correlation length is obtained as a function of the local nematic order parameter and the effective disorder strength. These results clarify what happens in the limiting cases of diminishing order parameter and disorder strength, that is near a phase transition of a pure system. In particular, it is found that quenched disorder is irrelevant as the order parameter tends to zero and hence does n…
Nematic elastomers do not show the discontinuous, first-order, phase transition that the Landau-De Gennes mean field theory predicts for a quadrupolar ordering in 3D. We attribute this behavior to the presence of network crosslinks, which act as sources of quenched orientational disorder. We show that the addition of weak random anisotropy results in a singular renormalization of the Landau-De Gennes expression, adding an energy term proportional to the inverse quartic power of order parameter Q. This reduces the first-order discontinuity in Q. For sufficiently high disorder strength the jump …
We study a model for the Nematic--Smectic-A (NA) transition in aerogel, and find that even arbitrarily weak quenched disorder (i.e., low aerogel density) destroys translational (smectic) order. Ignoring elastic anharmonicities, but keeping anharmonic couplings to disorder, leads to the prediction that there is no ``Bragg glass'' phase in this system: it is riddled with dislocation loops induced by the quenched disorder. Orientational (nematic) order is destroyed as well, as is the thermodynamically sharp NA transition, in agreement with recent experimental results.
We report numerical results for the hydrodynamics of inhomogeneous lyotropic and extensile active nematic gels. By simulating the coupled Cahn-Hilliard, Navier-Stokes, and Beris-Edwards equation for the evolution of the composition, flow and orientational order of an active nematic, we ask whether composition variations are important to determine its emergent physics. As in active gels of uniform composition, we find that increasing either activity or nematic tendency (e.g., overall active matter concentration) triggers a transition between an isotropic passive phase and an active nematic one.…
The effects of dispersed aerosil nanoparticles on two of the phase transitions of the thermotropic liquid crystal material 4-n-pentylphenylthiol-4'-n-octyloxybenzoate 8barS5 have been studied using high-resolution x-ray diffraction techniques. The aerosils hydrogen bond together to form a gel which imposes a weak quenched disorder on the liquid crystal. The smectic-A fluctuations are well characterized by a two-component line shape representing thermal and random-field contributions. An elaboration on this line shape is required to describe the fluctuations in the smectic-C phase; specifically…
We consider the effective pseudo-Casimir interaction forces mediated by a nematic liquid-crystalline film bounded by two planar surfaces, one of which imposes a random (disordered) distribution of the preferred anchoring axis in the so-called easy direction. We consider both the case of a quenched as well as an annealed disorder for the easy direction on the disordered surface and analyze the resultant fluctuation-induced interaction between the surfaces. In the case of quenched disorder, we show that the disorder effects appear additively in the total interaction and are dominant at intermedi…
Aqueous suspensions of Laponite, a system composed of disk-like nanoparticles, are found to develop optical birefringence over several days, well after the suspensions solidified due to jamming. The optical anisotropy is particularly enhanced near the air Laponite suspension interface over length-scales of several millimetres, which is beyond five orders of magnitude larger than the particle length scale, suggestive of large scale ordering influenced by the interface. The orientational order increases with time and is always greater for higher concentration of salt, higher concentration of Lap…
We numerically study the multi-scale properties of a 2d active gel to address the energy transfer mechanism. We find that activity is able to excite long-ranged distortions of the nematic pattern giving rise to spontaneous laminar flows and to a chaotic regime by further increasing the rate of active energy injection. By means of a scale-to-scale spectral analysis we find that the gel is basically driven by the local balancing between active injection and viscous dissipation, without any signal of non-linear hydrodynamical transfer and turbulent cascades. Furthermore, elasticity may qualitativ…
We carry out a detailed deuterium NMR study of local nematic ordering in polydomain nematic elastomers. This system has a close analogy to the random-anisotropy spin glass. We find that, in spite of the quadrupolar nematic symmetry in 3-dimensions requiring a first-order transition, the order parameter in the quenched ``nematic glass'' emerges via a continuous phase transition. In addition, by a careful analysis of the NMR line shape, we deduce that the local director fluctuations grow in a critical manner around the transition point. This could be the experimental evidence for the Aizenman-We…
We analyze the global phase diagram of a Maier-Saupe lattice model with the inclusion of disorder degrees of freedom to mimic a mixture of oblate and prolate molecules (discs and cylinders). In the neighborhood of a Landau multicritical point, solutions of the statistical problem can be written as a Landau-de Gennes expansion for the free energy. If the disorder degrees of freedom are quenched, we confirm the existence of a biaxial nematic strucure. If orientational and disorder degrees of freedom are allowed to thermalize, this biaxial solution becomes thermodynamically unstable. Also, we use…
Living active collectives have evolved with remarkable self-patterning ability to meet the physical and biological constraints for growth and survival. However, how complex multicellular patterns emerge from a single founder cell remains elusive. Here, by recourse to an agent-based model, we track the three-dimensional (3D) morphodynamics and cell orientational order of growing bacterial biofilms encased by agarose gels. Confined growth causes spatiotemporally heterogeneous stress buildup in the biofilm. High hydrostatic and low shear stresses at the core of the biofilm promote viscous-to-elas…
Properties of disordered nematic elastomers and gels are theoretically investigated with emphasis on the roles of non-local elastic interactions and crosslinking conditions. Networks originally crosslinked in the isotropic phase lose their long-range orientational order by the action of quenched random stresses, which we incorporate into the affine-deformation model of nematic rubber elasticity. We present a detailed picture of mechanical quasi-Goldstone modes, which accounts for an almost completely soft polydomain-monodomain (P-M) transition under strain as well as a ``four-leaf clover'' pat…
We introduce a simple mean-field lattice model to describe the behavior of nematic elastomers. This model combines the Maier-Saupe-Zwanzig approach to liquid crystals and an extension to lattice systems of the Warner-Terentjev theory of elasticity, with the addition of quenched random fields. We use standard techniques of statistical mechanics to obtain analytic solutions for the full range of parameters. Among other results, we show the existence of a stress-strain coexistence curve below a freezing temperature, analogous to the P-V diagram of a simple fluid, with the disorder strength playin…
Two-dimensional systems in which there is a competition between long-range repulsion and short range attraction exhibit a remarkable variety of patterns such as stripes, bubbles, and labyrinths. Such systems include magnetic films, Langmuir monolayers, polymers, gels, water-oil mixtures, and two-dimensional electron systems. In many of these systems quenched disorder from the underlying substrate may be present. We examine the dynamics and stripe formation in the presence of both an applied dc drive and quenched disorder. When the disorder strength exceeds a critical value, an applied dc drive…
The optical birefringence of rod-like nematogens (7CB, 8CB), imbibed in parallel silica channels with 10 nm diameter and 300 micrometer length, is measured and compared to the thermotropic bulk behavior. The orientational order of the confined liquid crystals, quantified by the uniaxial nematic ordering parameter, evolves continuously between paranematic and nematic states, in contrast to the discontinuous isotropic-to-nematic bulk phase transitions. A Landau-de Gennes model reveals that the strength of the orientational ordering fields, imposed by the silica walls, is beyond a critical thresh…
Cell monolayers are a central model system to tissue biophysics. In vivo, epithelial tissues are curved on the scale of microns, and curvature's role in the onset of spontaneous tissue flows is still not well-understood. Here, we present a hydrodynamic theory for an apical-basal asymmetric active nematic gel on a curved strip. We show that surface curvature qualitatively changes monolayer motion compared to flat space: the resulting flows can be thresholdless, and the transition to motion may change from continuous to discontinuous. Surface curvature, friction and active tractions are all show…
Lattice Monte-Carlo simulations were performed to study the equilibrium ordering in a two-dimensional nematic system with quenched random disorder. When the disordering field, which competes against the aligning effect of the Frank elasticity, is sufficiently strong, the long-range correlation of the director orientation is found to decay as a simple exponential, Exp[-r/x]. The correlation length {x} itself also decays exponentially with increasing strength of the disordering field. This result represents a new type of behavior, distinct from the Gaussian and power-law decays predicted by some…
We study the dynamics of quasi-two-dimensional concentrated suspensions of colloidal particles in active gels by computer simulations. Remarkably, we find that activity induces a dynamic clustering of colloids even in the absence of any preferential anchoring of the active nematic director at the particle surface. When such an anchoring is present, active stresses instead compete with elastic forces and re-disperse the aggregates observed in passive colloid-liquid crystal composites. Our quasi-two-dimensional "inverse" dispersions of passive particles in active fluids (as opposed to the more c…
Continuum hydrodynamic models of active liquid crystals have been used to describe dynamic self-organising systems such as bacterial swarms and cytoskeletal gels. A key prediction of such models is the existence of self-stabilising kink states that spontaneously generate fluid flow in quasi-one dimensional channels. Using simple stability arguments and numerical calculations we extend previous studies to give a complete characterisation of the phase space for both contractile and extensile particles (ie pullers and pushers) moving in a narrow channel as a function of their flow alignment prope…
The short-range order which remains when the isotropic to smectic-A transition is perturbed by a gel of silica nanoparticles (aerosils) has been studied using high-resolution synchrotron x-ray diffraction. The gels have been created \textit{in situ} in decylcyanobiphenyl (10CB), which has a strongly first-order isotropic to smectic-A transition. The effects are determined by detailed analysis of the temperature and gel density dependence of the smectic structure factor. In previous studies of the continuous nematic to smectic-A transition in a variety of thermotropic liquid crystals the aerosi…
Multiple experiments on active systems consider oriented active suspensions on substrates or in chambers confined along one direction. The theories of polar and apolar phases in such geometries were considered in A. Maitra et al, arXiv 1901.01069 and A. Maitra et al., PNAS 115, 6934 (2018) respectively. However, the presence of quenched random disorder due to the substrate cannot be completely eliminated in many experimental contexts possibly masking the predictions from those theories. In this paper, I consider the effect of quenched orientational disorder on the phase behaviour of both polar…
We report combined optical birefringence and neutron scattering measurements on the liquid crystal 12CB nanoconfined in mesoporous silicon layers. This liquid crystal exhibits strong nematic-smectic coupling responsible for a discontinuous isotropic-to-smectic phase transition in the bulk state. Confined in porous silicon, 12CB is subjected to strong anisotropic quenched disorder: a short-ranged smectic state evolves out of a paranematic phase. This transformation appears continuous, losing its bulk first order character. This contrasts with previously reported observations on liquid crystals …
Gels in soft-matter systems are an important nonergodic state of matter. We study a colloid-polymer mixture which is quenched by increasing the polymer concentration, from a fluid to a gel. Using confocal microscopy, we study both the static structure and dynamics in three dimensions (3D). Between the dynamically arrested gel and ergodic fluid comprised of isolated particles we find an intermediate 'cluster fluid' state, where the 'bonds' between the colloidal particles have a finite lifetime. The local dynamics are reminiscent of a fluid, while the local structure is almost identical to that …
Active matter locally converts chemical energy into mechanical work and, for this reason, it provides new mechanisms of pattern formation. In particular, active gels made of protein motors and filaments are far-from-equilibrium systems that exhibit spontaneous flow,[Kruse2004, Voituriez2005] leading to active turbulence in two and three dimensions[Sanchez2012, Kumar2018] and coherent flow in three dimensions[Wu2017] (3D). Although these dynamic flows reveal a characteristic length scale resulting from the interplay between active forcing and passive restoring forces, the observation of static …
Comprehensive x-ray scattering studies have characterized the smectic ordering of octylcyanobiphenyl (8CB) confined in the hydrogen-bonded silica gels formed by aerosil dispersions. For all densities of aerosil and all measurement temperatures, the correlations remain short range, demonstrating that the disorder imposed by the gels destroys the nematic (N) to smectic-A (SmA) transition. The smectic correlation function contains two distinct contributions. The first has a form identical to that describing the critical thermal fluctuations in pure 8CB near the N-SmA transition, and this term dis…
We study the kinetics of the liquid-to-crystal transformation and of gel formation in colloidal suspensions of oppositely charged particles. We analyse, by means of both computer simulations and experiments, the evolution of a fluid quenched to a state point of the phase diagram where the most stable state is either a homogeneous crystalline solid or a solid phase in contact with a dilute gas. On the one hand, at high temperatures and high packing fractions, close to an ordered-solid/disordered-solid coexistence line, we find that the fluid-to-crystal pathway does not follow the minimum free e…
We explore the optical birefringence of the nematic binary mixtures 6CB$_{1-x}$7CB$_x$ ($0~\le~x~\le~1$) imbibed into parallel-aligned nanochannels of mesoporous alumina and silica membranes for channel radii of $3.4~\le~R~\le 21.0$ nm. The results are compared with the bulk behavior and analyzed with a Landau-de-Gennes model. Depending on the channel radius the nematic ordering in the cylindrical nanochannels evolves either discontinuously (subcritical regime, nematic ordering field $σ<1/2$) or continuously (overcritical regime, $σ>1/2$), but in both cases with a characteristic paranematic pr…
In equilibrium, disorder conspires with topological defects to redefine the ordered states of matter in systems as diverse as crystals, superconductors and liquid crystals. Far from equilibrium, however, the consequences of quenched disorder on active condensed matter remain virtually uncharted. Here, we reveal a state of strongly disordered active matter with no counterparts in equilibrium: a dynamical vortex glass. Combining high-content microfluidic experiments and theory, we show how colloidal flocks collectively cruise through disorder without relaxing the topological singularities of the…
Many of the biological phenomena involve collective dynamics driven by self-propelled motion and nonequilibrium force (i.e., activity) that result in features unexpected from equilibrium physics. On the other hand, biological experiments utilizing molecular motors, bacteria, and mammalian cells have served as ideal setups to probe the effect of activity in materials and compare with theory. As has been established, however, biomolecules are chiral in nature, which can lead to the chiral patterning of cells and even to the left-right symmetry breaking in our body. The general mechanism of how t…
We simulate an experiment in which a colloidal probe is pulled through an active nematic fluid. We find that the drag on the particle is non-Stokesian (not proportional to its radius). Strikingly, a large enough particle in contractile fluid (such as an actomyosin gel) can show negative viscous drag in steady state: the particle moves in the opposite direction to the externally applied force. We explain this, and the qualitative trends seen in our simulations, in terms of the disruption of orientational order around the probe particle and the resulting modifications to the active stress.
The transport of active particles may occur in complex environments, in which it emerges from the interplay between the mobility of the active components and the quenched disorder of the environment. Here we explore structural and dynamical properties of Active Brownian Particles (ABPs) in random environments composed of fixed obstacles in three dimensions. We consider different arrangements of the obstacles. In particular, we consider two particular situations corresponding to experimentally realizable settings. Firstly, we model pinning particles in (non--overlapping) random positions and se…
