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arXiv 2201.07106cs.CVcs.AIcs.LG
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解剖结构分割中观测者间变异性量化的变分推理

Variational Inference for Quantifying Inter-observer Variability in Segmentation of Anatomical Structures

Gordon Center for Medical Imaging, Massachusetts General Hospital and Harvard Medical School(马萨诸塞州总医院与哈佛医学院戈登医学影像中心)

Xiaofeng Liu, Fangxu Xing, Thibault Marin, Georges El Fakhri, Jonghye Woo

摘要:

通过医学成像数据可见的病变或器官边界通常是模糊的,因此导致多个读取器描绘中的显著变化,即,随意的不确定性的来源。特别是,用磁共振(MR)成像数据量化手动注释的观察者间变异性在建立各种诊断和治疗任务的参考标准方面起着至关重要的作用。然而,大多数分割方法只是对从图像到其单个分割图的映射进行建模,并且不考虑注释者的分歧。为了考虑观察者间的变异性,而不牺牲准确性,我们提出了一种新的变分推理框架来模拟合理的分割图的分布,给定一个特定的MR图像,它明确地代表了多个读者的变异性。具体来说,我们诉诸于一个潜在的向量编码的多读者的变化和抵消固有的信息损失的成像数据。然后,我们应用一个变分自编码器网络,并优化其证据下限(ELBO),有效地近似的分割图的分布,给定的MR图像。实验结果,进行了与QUBIQ脑生长MRI分割数据集与七个注释器,证明了我们的方法的有效性。

英文摘要:

Lesions or organ boundaries visible through medical imaging data are often ambiguous, thus resulting in significant variations in multi-reader delineations, i.e., the source of aleatoric uncertainty. In particular, quantifying the inter-observer variability of manual annotations with Magnetic Resonance (MR) Imaging data plays a crucial role in establishing a reference standard for various diagnosis and treatment tasks. Most segmentation methods, however, simply model a mapping from an image to its single segmentation map and do not take the disagreement of annotators into consideration. In order to account for inter-observer variability, without sacrificing accuracy, we propose a novel variational inference framework to model the distribution of plausible segmentation maps, given a specific MR image, which explicitly represents the multi-reader variability. Specifically, we resort to a latent vector to encode the multi-reader variability and counteract the inherent information loss in the imaging data. Then, we apply a variational autoencoder network and optimize its evidence lower bound (ELBO) to efficiently approximate the distribution of the segmentation map, given an MR image. Experimental results, carried out with the QUBIQ brain growth MRI segmentation datasets with seven annotators, demonstrate the effectiveness of our approach.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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