Topological defects are increasingly being identified in various biological systems, where their characteristic flow fields and stress patterns are associated with continuous active stress generation by biological entities. Here, using numerical simulations of continuum fluctuating nematohydrodynamics we show that even in the absence of any specific form of active stresses associated with self-propulsion, mesoscopic fluctuations in either orientational alignment or hydrodynamics can independently result in flow patterns around topological defects that resemble the ones observed in active systems. Our simulations further show the possibility of extensile- and contractile-like motion of fluctuation-induced positive half-integer topological defects. Remarkably, isotropic stress fields also reproduce the experimentally measured stress patterns around topological defects in epithelia. Our findings further reveal that extensile- or contractile-like flow and stress patterns around fluctuation-induced defects are governed by passive elastic stresses and flow-aligning behavior of the nematics.
Defect dynamics in a thin active nematic layer is studied by asymptotic matching of solutions in the defect core and the far field. The analysis is facilitated by the correspondence between the 2D nematic and complex scalar field models. Self-propulsion and topological interactions are identified as the primary drivers of the defect motion, surpassing the influence of both passive backflow and active flow induced by other defects.
Topological defects play a key role in two-dimensional active nematics, and a transient role in two-dimensional active polar fluids. In this paper, we study both the transient and long-time behavior of defects in two-dimensional active polar fluids in the limit of strong order and overdamped, compressible flow, and compare the defect dynamics with the corresponding active nematics model studied recently. One result is non-central interactions between defect pairs for active polar fluids, and by extending our analysis to allow orientation dynamics of defects, we find that the orientation of $+1…
Recent experiments and numerical studies have drawn attention to the dynamics of active nematics. Two-dimensional active nematics flow spontaneously and exhibit spatiotemporal chaotic flows with proliferation of topological defects in the nematic texture. It has been proposed that the dynamics of active nematics can be understood in terms of the dynamics of interacting defects, propelled by active stress. Previous work has derived effective equations of motion for individual defects as quasi-particles moving in the mean field generated by other defects, but an effective theory governing multi-…
The scattering of light at large wave-vector magnitudes k in nematic systems containing topological defects is investigated theoretically. At large k the structure factor S(k) is dominated by power-law contributions originating from singular order-parameter variations associated with topological defects and from transverse thermal fluctuations of the nematic director. These defects (nematic disclinations and hedgehogs) lead to contributions of the form rho A k^{-xi} (``the Porod tail''), where rho is the number density of a given type of defect, A is a dimensionless Porod amplitude, and xi is …
Inspired by recent experiments that highlight the role of nematic defects in the morphogenesis of epithelial tissues, we develop a minimal framework to study the dynamics of an active curved surface driven by its nematic texture. Allowing the surface to evolve via relaxational dynamics leads to a theory linking nematic defect dynamics, cellular division rates and Gaussian curvature. Regions of large positive (negative) curvature and positive (negative) growth are colocalized with the presence of positive (negative) defects. Applying this framework to the dynamics of cultured murine neural prog…
We study a continuum model of an extensile active nematic to show that mesoscale turbulence develops in two stages: (i) ordered regions undergo an intrinsic hydrodynamic instability generating walls, lines of stong bend deformations, (ii) the walls relax by forming oppositely charged pairs of defects. Both creation and annihilation of defect pairs reinstate nematic regions which undergo further instabilities, leading to a dynamic steady state. We compare this with the development of active turbulence in a contractile active nematic.
We formulate the statistical dynamics of topological defects in the active nematic phase, formed in two dimensions by a collection of self-driven particles on a substrate. An important consequence of the non-equilibrium drive is the spontaneous motility of strength +1/2 disclinations. Starting from the hydrodynamic equations of active nematics, we derive an interacting particle description of defects that includes active torques. We show that activity, within perturbation theory, lowers the defect-unbinding transition temperature, determining a critical line in the temperature-activity plane t…
We consider a phenomenological continuum theory for an extensile, overdamped active nematic liquid crystal, applicable in the dense regime. Constructed from general principles, the theory is universal, with parameters independent of any particular microscopic realization. We show that it exhibits a bend instability similar to that seen in active suspensions, that leads to the proliferation of defects. We find three distinct nonequilibrium steady states: a defect-ordered nematic in which $+\frac{1}{2}$ disclinations develop polar ordering, an undulating nematic state with no defects, and a turb…
We show that back-flow, the coupling between the order parameter and the velocity fields, has a significant effect on the motion of defects in nematic liquid crystals. In particular the defect speed can depend strongly on the topological strength in two dimensions and on the sense of rotation of the director about the core in three dimensions.
When a nematic liquid crystal is confined in a porous medium with strong anchoring conditions, topological defects, called disclinations, are stably formed with numerous possible configurations. Since the energy barriers between them are large enough, the system shows multistability. Our lattice Boltzmann simulations demonstrate dynamic couplings between the multistable defect pattern and the flow in a regular porous matrix. At sufficiently low flow speed, the topological defects are pinned at the quiescent positions. As the flow speed is increased, the defects show cyclic motions and nonlinea…
In two dimensional nematics, topological defects are point like singularities with both a charge and a phase. We study topological defects within curved nematic textures on the surface of a cylinder. This allows us to isolate the effect of extrinsic curvature on the structure of the topological defect. By minimizing the energy associated with distortions in the nematic director around the core of a defect we show that the phase of the topological defect is coupled to the orientation of the cylinder. This coupling depends on the relative energetic cost associated with splay, bend and twist dist…
We study the collective dynamics of elongated swimmers in a very thin fluid layer by devising long, filamentous, non-tumbling bacteria. The strong confinement induces weak nematic alignment upon collision, which, for large enough density of cells, gives rise to global nematic order. This homogeneous but fluctuating phase, observed on the largest experimentally-accessible scale of millimeters, exhibits the properties predicted by standard models for flocking such as the Vicsek-style model of polar particles with nematic alignment: true long-range nematic order and non-trivial giant number fluct…
We study the active flow around isolated defects and the self-propulsion velocity of $+1/2$ defects in an active nematic film with both viscous dissipation (with viscosity $η$) and frictional damping $Γ$ with a substrate. The interplay between these two dissipation mechanisms is controlled by the hydrodynamic dissipation length $\ell_d=\sqrt{η/Γ}$ that screens the flows. For an isolated defect, in the absence of screening from other defects, the size of the vortical flows around the defect is controlled by the system size $R$. In the presence of friction that leads to a finite value of $\ell_d…
Living materials at different length scales manifest active nematic features such as orientational order, nematic topological defects, and active nematic turbulence. Using numerical simulations we investigate the impact of fluid inertia on the collective pattern formation in active nematics. We show that an incremental increase in inertial effects due to reduced viscosity results in gradual melting of nematic order with an increase in topological defect density before a discontinuous transition to a vortex-condensate state. The emergent vortex-condensate state at low enough viscosities coincid…
A nematic liquid crystal confined to the surface of a sphere exhibits topological defects of total charge $+2$ due to the topological constraint. In equilibrium, the nematic field forms four $+1/2$ defects, located at the corners of a regular tetrahedron inscribed within the sphere, since this minimizes the Frank elastic energy. If additionally the individual nematogens exhibit self-driven directional motion, the resulting active system creates large-scale flow that drives it out of equilibrium. In particular, the defects now follow complex dynamic trajectories which, depending on the strength…
We study the dynamics of active nematic films on a substrate driven by active flows with or without the incompressible constraint.Through simulations and theoretical analysis, we show that arch patterns are stable in the compressible case, whilst they become unstable under the incompressibility constraint. For compressible flows at high enough activity, stable arches organize themselves into a smectic-like pattern, which induce an associated global polar ordering of $+1/2$ nematic defects. By contrast, divergence-free flows give rise to a local nematic order of the $+1/2$ defects, consisting o…
We study the dynamics of topological defects in active nematic films with spatially-varying activity and consider two setups: i) a constant activity gradient, and ii) a sharp jump in activity. A constant gradient of extensile (contractile) activity endows the comet-like $+1/2$ defect with a finite vorticity that drives the defect to align its nose in the direction of decreasing (increasing) gradient. A constant gradient does not, however, affect the known self-propulsion of the $+1/2$ defect and has no effect on the $-1/2$ that remains a non-motile particle. A sharp jump in activity acts like …
The influence of controlable parameters like temperature and wavelength on the trajectories of light in a nematic liquid crystal with topological defects is studied through a geometric model. The model incorporates phenomenological details as how the refractive indices depend on such parameters. The deflection of light by the topological defect is then shown to be greater at lower temperatures and shorter wavelengths.
The growing interest in active nematics and the emerging evidence of the relevance of topological defects in biology asks for reliable data analysis tools to identify, classify and track such defects in simulation and microscopy data. We here provide such tools and demonstrate on two examples, on an active turbulent state in an active nematodynamic model and on emerging nematic order in a multi-phase field model, the possibility to compare statistical data on defect velocities with experimental results. The considered tools, which are physics based and data driven, are compared with each other…
A new theory of hydrodynamics of uniaxial nematic liquid crystal films in the presence of defects is developed. A gauge field incorporating screening is introduced, resulting in the static elastic free energy having the form of a two-dimensional Abelian-Higgs model. Hydrodynamic equations are derived via the standard methods of de~Groot and Mazur. By working in the vicinity of the Bogomol'nyi equations consequences for defect centre motion are outlined.
Topological defects are distinctive signatures of liquid crystals. They profoundly affect the viscoelastic behavior of the fluid by constraining the orientational structure in a way that inevitably requires global changes not achievable with any set of local deformations. In active nematic liquid crystals topological defects not only dictate the global structure of the director, but also act as local sources of motion, behaving as self-propelled particles. In this article we present a detailed analytical and numerical study of the mechanics of topological defects in active nematic liquid cryst…
We consider the effects of the coupling between the orientational order of the two monolayers in flat nematic bilayers. We show that the presence of a topological defect on one bilayer generates a nontrivial orientational texture on both monolayers. Therefore, one cannot consider isolated defects on one monolayer, but rather associated pairs of defects on either monolayer, which we call bi-defects. Bi-defects generally produce walls, such that the textures of the two monolayers are identical outside the walls, and different in their interior. We suggest some experimental conditions in which th…
The study of liquid crystals at equilibrium has led to fundamental insights into the nature of ordered materials, as well as to practical applications such as display technologies. Active nematics are a fundamentally different class of liquid crystals, driven away from equilibrium by the autonomous motion of their constituent rod-like particles. This internally generated activity powers the continuous creation and annihilation of topological defects, which leads to complex streaming flows whose chaotic dynamics appear to destroy long-range order. Here, we study these dynamics in experimental a…
We investigate the effects of extrinsic curvature on the turbulent behavior of a 2D active nematic confined to the surface of a cylinder. The surface of a cylinder has no intrinsic curvatrue and only extrinsic curvature. A nematic field reacts to the extrinsic curvature by trying to align with the lowest principle curvature, in this case parallel to the long axis of the cylinder. When nematics are sufficiently active, there is a proliferation of defects arising from a bend or splay instability depending on the nature of the active stress. The extrinsic curvature of the cylinder beaks the rotat…
We study transformations of self-organized defect arrays at the nematic-smectic A liquid crystal phase transition, and show that these defect configurations are correlated, or "remembered", across the phase transition. A thin film of thermotropic liquid crystal is subjected to hybrid anchoring by an air interface and a water substrate, and viewed under polarized optical microscopy. Upon heating from smectic-A to nematic, a packing of focal conic domains melts into a dense array of boojums---nematic surface defects---which then coarsens by pair-annihilation. With the aid of Landau-de Gennes num…
We adapt the Halperin-Mazenko formalism to analyze two-dimensional active nematics coupled to a generic fluid flow. The governing hydrodynamic equations lead to evolution laws for nematic topological defects and their corresponding density fields. We find that $\pm 1/2$ defects are propelled by the local fluid flow and by the nematic orientation coupled with the flow shear rate. In the overdamped and compressible limit, we recover the previously obtained active self-propulsion of the +1/2 defects. Non-local hydrodynamic effects are primarily significant for incompressible flows, for which it i…
Topological defects are one of the most conspicuous features of liquid crystals. In two dimensional nematics, they have been shown to behave effectively as particles with both, charge and orientation, which dictate their interactions. Here, we study "twisted" defects that have a radially dependent orientation. We find that twist can be partially relaxed through the creation and annihilation of defect pairs. By solving the equations for defect motion and calculating the forces on defects, we identify four distinct elements that govern the relative relaxational motion of interacting topological …
Inverse nematic emulsions in which surfactant-coated water droplets are dispersed in a nematic host fluid have distinctive properties that set them apart from dispersions of two isotropic fluids or of nematic droplets in an isotropic fluid. We present a comprehensive theoretical study of the distortions produced in the nematic host by the dispersed droplets and of solvent mediated dipolar interactions between droplets that lead to their experimentally observed chaining. A single droplet in a nematic host acts like a macroscopic hedgehog defect. Global boundary conditions force the nucleation o…
We present a theoretical study of the director fields and energetics of nematic liquid crystal shells with two pairs of surface defects. The pairs of defects can undergo abrupt transitions between a configuration of maximum separation to at state in which the defects are confined to the thinnest hemisphere. We construct a phase diagram that maps out the stability and coexistence of these two configurations as a function of shell thickness and thickness inhomogeneity. Our results compare favorably with the experimentally observed transitions in nematic double emulsion droplets and explain their…
Topological defects in active liquid crystals can be confined by introducing gradients of activity. Here, we examine the dynamical behavior of two defects confined by a sharp gradient of activity that separates an active circular region and a surrounding passive nematic material. Continuum simulations are used to explain how the interplay among energy injection into the system, hydrodynamic interactions, and frictional forces governs the dynamics of topologically required self-propelling $+1/2$ defects. Our findings are rationalized in terms of a phase diagram for the dynamical response of def…
Recent numerical simulations of lid-driven cavity flow of a nematic liquid crystal have found dynamical behavior where topological defects rotate about the center of the fluid vortex induced by the lid motion. By considering a simpler geometry of an infinite system with axisymmetric fluid flow we show that the Ericksen-Leslie nematodynamic equation for the director can be solved exactly. The solution demonstrates that any configuration of defects will be advected by the fluid flow, with the defects rotating about the center of the fluid vortex with the angular velocity of the fluid.
Stabilizing defects in liquid-crystal systems is crucial for many physical processes and applications ranging from functionalizing liquid-crystal textures to recently reported command of chaotic behaviors of active matters. In this work, we perform analytical calculations to study the curvature driven stability mechanism of defects based on the isotropic nematic disk model that is free of any topological constraint. We show that in a growing spherical disk covering a sphere the accumulation of curvature effect can prevent typical +1 and +1/2 defects from forming boojum textures where the defec…
Using computer simulations we investigate the microscopic structure of the singular director field within a nematic droplet. As a theoretical model for nematic liquid crystals we take hard spherocylinders. To induce an overall topological charge, the particles are either confined to a two-dimensional circular cavity with homeotropic boundary or to the surface of a three-dimensional sphere. Both systems exhibit half-integer topological point defects. The isotropic defect core has a radius of the order of one particle length and is surrounded by free-standing density oscillations. The effective …
To model a nematic emulsion consisting of a surfactant-coated water droplet dispersed in a nematic host, we performed a molecular dynamics simulation of a droplet immersed in a system of 2048 Gay-Berne ellipsoids in a nematic phase. Strong radial anchoring at the surface of the droplet induced a Saturn ring defect configuration, consistent with theoretical predictions for very small droplets. A surface ring configuration was observed for lower radial anchoring strengths, and a pair of point defects was found near the poles of the droplet for tangential anchoring. We also simulated the falling …
A nematic membrane is a sheet with embedded orientational order, which can occur in biological cells, liquid crystal films, manufactured materials, and other soft matter systems. By formulating the free energy of nematic films using tensor contractions from differential geometry, we elucidate the elastic terms allowed by symmetry, and indicate differences from hexatic membranes. We find that topological defects in the orientation field can cause the membrane to buckle over a size set by the competition between surface tension and in-plane elasticity. In the absence of bending rigidity the resu…
Nematic colloids exhibit a large diversity of topological defects and structures induced by colloidal particles in the orientationally ordered liquid crystal host fluids. These defects and field configurations define elastic interactions and medium-mediated self-assembly, as well as serve as model systems in exploiting the richness of interactions between topologies and geometries of colloidal surfaces, nematic fields, and topological singularities induced by particles in the nematic bulk and at nematic-colloidal interfaces. Here we demonstrate formation of quarter-strength surface-pinned disc…
We numerically study the orientation deformations in nematic liquid crystals around charged particles. We set up a Ginzburg-Landau theory with inhomogeneous electric field. If the dielectric anisotropy varepsilon_1 is positive, Saturn ring defects are formed around the particles. For varepsilon_1<0, novel "ansa" defects appear, which are disclination lines with their ends on the particle surface. We find unique defect structures around two charged particles. To lower the free energy, oppositely charged particle pairs tend to be aligned in the parallel direction for varepsilon_1>0 and in the pe…
We study the spatiotemporal patterns that emerge when an active nematic film is topologically constraint. These topological constraints allow to control the non-equilibrium dynamics of the active system. We consider ellipsoidal shapes for which the resulting defects are 1/2 disclinations and analyze the relation between their location and dynamics and local geometric properties of the ellipsoid. We highlight two dynamic modes: a tunable periodic state that oscillates between two defect configurations on a spherical shape and a tunable rotating state for oblate spheroids. We further demonstrate…
Directional media, such as nematic liquid crystals and ferromagnets, are characterized by their topologically stabilized defects in directional order. In nematics, boundary conditions and surface-treated inclusions often create complex structures, which are difficult to classify. Topological charge of point defects in nematics has ambiguously defined sign and its additivity cannot be ensured when defects are observed separately. We demonstrate how the topological charge of complex defect structures can be determined by identifying and counting parts of the texture that satisfy simple geometric…
We investigate the emergence of orientational order among +1/2 disclinations in active nematic liquid crystals. Using a combination of theoretical and experimental methods, we show that +1/2 disclinations have short-range antiferromagnetic alignment, as a consequence of the elastic torques originating from their polar structure. The presence of intermediate -1/2 disclinations, however, turns this interaction from anti-aligning to aligning at scales that are smaller than the typical distance between like-sign defects. No long-range orientational order is observed. Strikingly, these effects are …
We show that a fixed set of woven defect lines in a nematic liquid crystal supports a set of non-singular topological states which can be mapped on to recurrent stable configurations in the Abelian sandpile model or chip-firing game. The physical correspondence between local Skyrmion flux and sandpile height is made between the two models. Using a toy model of the elastic energy, we examine the structure of energy minima as a function of topological class and show that the system admits domain wall Skyrmion solitons.
Active matter is characterized by its ability to induce motion by self-generated stress. In the case of a solid, such motion can lead to shape transformations. The stress-generating components can be anisotropic endowing the material with mesoscopic orientational order. It is currently unknown how the specific postions and orientations of these active constituents influence morphological changes. We study theoretically the effects of imposing topological point defects in the arrangements of the stress-generating components on the morphology of elastic active nematic shells. We show that topolo…
Defect Kinematics in 2D Nematics: Contributions from Surface Topology, Intrinsic and Extrinsic Geometry, Solitons, Defect Orientations, and Elastic Anisotropy
Two nematic shells brought in contact coalesce in order to reduce their interfacial tension. This process proceeds through the creation of a liquid neck-like bridge through which the encapsulated fluid flows. Following this topological transition, We study the defect textures as the combined shell shape evolves. Varying the sizes of the shells, we perform a quasistatic investigation of the director field and the defect valence on the doublet. Regimes are found where positive and negative defects exist due to the large negative Gaussian curvature at the neck. Using large scale computer simulati…
Cultured stem cells have become a standard platform not only for regenerative medicine and developmental biology but also for biophysical studies. Yet, the characterization of cultured stem cells at the level of morphology and macroscopic patterns resulting from cell-to-cell interactions remain largely qualitative, even though they are the simplest features observed in everyday experiments. Here we report that neural progenitor cells (NPCs), which are multipotent stem cells that give rise to cells in the central nervous system, rapidly glide and stochastically reverse its velocity while locall…
Chiral additives in the nematic liquid crystal can alter the dynamics of point defects moving on a disclination line. They exert a constant force on defects, leading to the bimodal distribution of distances between them at long times. The evolution of the system of defects in the presence of chiral additives provides a very direct proof of the existence of repulsive forces between the defects at large distances. We find that addition of a sufficient amount of chiral compound removes all point defects from the system. The process is studied in the system of 8CB (4-n-octyl-4 '-cyanobiphenyl) dop…
Non-equilibrium dynamics of topological defects can be used as a fundamental propulsion mechanism in microscopic active matter. Here, we demonstrate swimming of topological defect-propelled colloidal particles in (passive) nematic fluids through experiments and numerical simulations. Dynamic swim strokes of the topological defects are driven by colloidal rotation in an external magnetic field, causing periodic defect rearrangement which propels the particles. The swimming velocity is determined by the colloid's angular velocity, sense of rotation and defect polarity. By controlling them we can…
Using Monte Carlo simulations of the Lebwohl--Lasher model we study the director ordering in a nematic cell where the top and bottom surfaces are patterned with a lattice of $\pm 1$ point topological defects of lattice spacing $a$. We find that the nematic order depends crucially on the ratio of the height of the cell $H$ to $a$. When $H/a \gtrsim 0.9$ the system is very well--ordered and the frustration induced by the lattice of defects is relieved by a network of half--integer defect lines which emerge from the point defects and hug the top and bottom surfaces of the cell. When $H/a \lesssim…
