The growing interest in active nematics and the emerging evidence of the relevance of topological defects in biology asks for reliable data analysis tools to identify, classify and track such defects in simulation and microscopy data. We here provide such tools and demonstrate on two examples, on an active turbulent state in an active nematodynamic model and on emerging nematic order in a multi-phase field model, the possibility to compare statistical data on defect velocities with experimental results. The considered tools, which are physics based and data driven, are compared with each other.
We consider a phenomenological continuum theory for an extensile, overdamped active nematic liquid crystal, applicable in the dense regime. Constructed from general principles, the theory is universal, with parameters independent of any particular microscopic realization. We show that it exhibits a bend instability similar to that seen in active suspensions, that leads to the proliferation of defects. We find three distinct nonequilibrium steady states: a defect-ordered nematic in which $+\frac{1}{2}$ disclinations develop polar ordering, an undulating nematic state with no defects, and a turb…
In two dimensional nematics, topological defects are point like singularities with both a charge and a phase. We study topological defects within curved nematic textures on the surface of a cylinder. This allows us to isolate the effect of extrinsic curvature on the structure of the topological defect. By minimizing the energy associated with distortions in the nematic director around the core of a defect we show that the phase of the topological defect is coupled to the orientation of the cylinder. This coupling depends on the relative energetic cost associated with splay, bend and twist dist…
We study the dynamics of active nematic films on a substrate driven by active flows with or without the incompressible constraint.Through simulations and theoretical analysis, we show that arch patterns are stable in the compressible case, whilst they become unstable under the incompressibility constraint. For compressible flows at high enough activity, stable arches organize themselves into a smectic-like pattern, which induce an associated global polar ordering of $+1/2$ nematic defects. By contrast, divergence-free flows give rise to a local nematic order of the $+1/2$ defects, consisting o…
The influence of controlable parameters like temperature and wavelength on the trajectories of light in a nematic liquid crystal with topological defects is studied through a geometric model. The model incorporates phenomenological details as how the refractive indices depend on such parameters. The deflection of light by the topological defect is then shown to be greater at lower temperatures and shorter wavelengths.
A new theory of hydrodynamics of uniaxial nematic liquid crystal films in the presence of defects is developed. A gauge field incorporating screening is introduced, resulting in the static elastic free energy having the form of a two-dimensional Abelian-Higgs model. Hydrodynamic equations are derived via the standard methods of de~Groot and Mazur. By working in the vicinity of the Bogomol'nyi equations consequences for defect centre motion are outlined.
Topological defects are distinctive signatures of liquid crystals. They profoundly affect the viscoelastic behavior of the fluid by constraining the orientational structure in a way that inevitably requires global changes not achievable with any set of local deformations. In active nematic liquid crystals topological defects not only dictate the global structure of the director, but also act as local sources of motion, behaving as self-propelled particles. In this article we present a detailed analytical and numerical study of the mechanics of topological defects in active nematic liquid cryst…
We consider the effects of the coupling between the orientational order of the two monolayers in flat nematic bilayers. We show that the presence of a topological defect on one bilayer generates a nontrivial orientational texture on both monolayers. Therefore, one cannot consider isolated defects on one monolayer, but rather associated pairs of defects on either monolayer, which we call bi-defects. Bi-defects generally produce walls, such that the textures of the two monolayers are identical outside the walls, and different in their interior. We suggest some experimental conditions in which th…
The study of liquid crystals at equilibrium has led to fundamental insights into the nature of ordered materials, as well as to practical applications such as display technologies. Active nematics are a fundamentally different class of liquid crystals, driven away from equilibrium by the autonomous motion of their constituent rod-like particles. This internally generated activity powers the continuous creation and annihilation of topological defects, which leads to complex streaming flows whose chaotic dynamics appear to destroy long-range order. Here, we study these dynamics in experimental a…
We investigate the effects of extrinsic curvature on the turbulent behavior of a 2D active nematic confined to the surface of a cylinder. The surface of a cylinder has no intrinsic curvatrue and only extrinsic curvature. A nematic field reacts to the extrinsic curvature by trying to align with the lowest principle curvature, in this case parallel to the long axis of the cylinder. When nematics are sufficiently active, there is a proliferation of defects arising from a bend or splay instability depending on the nature of the active stress. The extrinsic curvature of the cylinder beaks the rotat…
We study transformations of self-organized defect arrays at the nematic-smectic A liquid crystal phase transition, and show that these defect configurations are correlated, or "remembered", across the phase transition. A thin film of thermotropic liquid crystal is subjected to hybrid anchoring by an air interface and a water substrate, and viewed under polarized optical microscopy. Upon heating from smectic-A to nematic, a packing of focal conic domains melts into a dense array of boojums---nematic surface defects---which then coarsens by pair-annihilation. With the aid of Landau-de Gennes num…
We adapt the Halperin-Mazenko formalism to analyze two-dimensional active nematics coupled to a generic fluid flow. The governing hydrodynamic equations lead to evolution laws for nematic topological defects and their corresponding density fields. We find that $\pm 1/2$ defects are propelled by the local fluid flow and by the nematic orientation coupled with the flow shear rate. In the overdamped and compressible limit, we recover the previously obtained active self-propulsion of the +1/2 defects. Non-local hydrodynamic effects are primarily significant for incompressible flows, for which it i…
Topological defects are one of the most conspicuous features of liquid crystals. In two dimensional nematics, they have been shown to behave effectively as particles with both, charge and orientation, which dictate their interactions. Here, we study "twisted" defects that have a radially dependent orientation. We find that twist can be partially relaxed through the creation and annihilation of defect pairs. By solving the equations for defect motion and calculating the forces on defects, we identify four distinct elements that govern the relative relaxational motion of interacting topological …
Inverse nematic emulsions in which surfactant-coated water droplets are dispersed in a nematic host fluid have distinctive properties that set them apart from dispersions of two isotropic fluids or of nematic droplets in an isotropic fluid. We present a comprehensive theoretical study of the distortions produced in the nematic host by the dispersed droplets and of solvent mediated dipolar interactions between droplets that lead to their experimentally observed chaining. A single droplet in a nematic host acts like a macroscopic hedgehog defect. Global boundary conditions force the nucleation o…
Topological defects in active liquid crystals can be confined by introducing gradients of activity. Here, we examine the dynamical behavior of two defects confined by a sharp gradient of activity that separates an active circular region and a surrounding passive nematic material. Continuum simulations are used to explain how the interplay among energy injection into the system, hydrodynamic interactions, and frictional forces governs the dynamics of topologically required self-propelling $+1/2$ defects. Our findings are rationalized in terms of a phase diagram for the dynamical response of def…
Recent numerical simulations of lid-driven cavity flow of a nematic liquid crystal have found dynamical behavior where topological defects rotate about the center of the fluid vortex induced by the lid motion. By considering a simpler geometry of an infinite system with axisymmetric fluid flow we show that the Ericksen-Leslie nematodynamic equation for the director can be solved exactly. The solution demonstrates that any configuration of defects will be advected by the fluid flow, with the defects rotating about the center of the fluid vortex with the angular velocity of the fluid.
Using computer simulations we investigate the microscopic structure of the singular director field within a nematic droplet. As a theoretical model for nematic liquid crystals we take hard spherocylinders. To induce an overall topological charge, the particles are either confined to a two-dimensional circular cavity with homeotropic boundary or to the surface of a three-dimensional sphere. Both systems exhibit half-integer topological point defects. The isotropic defect core has a radius of the order of one particle length and is surrounded by free-standing density oscillations. The effective …
To model a nematic emulsion consisting of a surfactant-coated water droplet dispersed in a nematic host, we performed a molecular dynamics simulation of a droplet immersed in a system of 2048 Gay-Berne ellipsoids in a nematic phase. Strong radial anchoring at the surface of the droplet induced a Saturn ring defect configuration, consistent with theoretical predictions for very small droplets. A surface ring configuration was observed for lower radial anchoring strengths, and a pair of point defects was found near the poles of the droplet for tangential anchoring. We also simulated the falling …
A nematic membrane is a sheet with embedded orientational order, which can occur in biological cells, liquid crystal films, manufactured materials, and other soft matter systems. By formulating the free energy of nematic films using tensor contractions from differential geometry, we elucidate the elastic terms allowed by symmetry, and indicate differences from hexatic membranes. We find that topological defects in the orientation field can cause the membrane to buckle over a size set by the competition between surface tension and in-plane elasticity. In the absence of bending rigidity the resu…
Nematic colloids exhibit a large diversity of topological defects and structures induced by colloidal particles in the orientationally ordered liquid crystal host fluids. These defects and field configurations define elastic interactions and medium-mediated self-assembly, as well as serve as model systems in exploiting the richness of interactions between topologies and geometries of colloidal surfaces, nematic fields, and topological singularities induced by particles in the nematic bulk and at nematic-colloidal interfaces. Here we demonstrate formation of quarter-strength surface-pinned disc…
We study the spatiotemporal patterns that emerge when an active nematic film is topologically constraint. These topological constraints allow to control the non-equilibrium dynamics of the active system. We consider ellipsoidal shapes for which the resulting defects are 1/2 disclinations and analyze the relation between their location and dynamics and local geometric properties of the ellipsoid. We highlight two dynamic modes: a tunable periodic state that oscillates between two defect configurations on a spherical shape and a tunable rotating state for oblate spheroids. We further demonstrate…
Directional media, such as nematic liquid crystals and ferromagnets, are characterized by their topologically stabilized defects in directional order. In nematics, boundary conditions and surface-treated inclusions often create complex structures, which are difficult to classify. Topological charge of point defects in nematics has ambiguously defined sign and its additivity cannot be ensured when defects are observed separately. We demonstrate how the topological charge of complex defect structures can be determined by identifying and counting parts of the texture that satisfy simple geometric…
We investigate the emergence of orientational order among +1/2 disclinations in active nematic liquid crystals. Using a combination of theoretical and experimental methods, we show that +1/2 disclinations have short-range antiferromagnetic alignment, as a consequence of the elastic torques originating from their polar structure. The presence of intermediate -1/2 disclinations, however, turns this interaction from anti-aligning to aligning at scales that are smaller than the typical distance between like-sign defects. No long-range orientational order is observed. Strikingly, these effects are …
Defect Kinematics in 2D Nematics: Contributions from Surface Topology, Intrinsic and Extrinsic Geometry, Solitons, Defect Orientations, and Elastic Anisotropy
Two nematic shells brought in contact coalesce in order to reduce their interfacial tension. This process proceeds through the creation of a liquid neck-like bridge through which the encapsulated fluid flows. Following this topological transition, We study the defect textures as the combined shell shape evolves. Varying the sizes of the shells, we perform a quasistatic investigation of the director field and the defect valence on the doublet. Regimes are found where positive and negative defects exist due to the large negative Gaussian curvature at the neck. Using large scale computer simulati…
Chiral additives in the nematic liquid crystal can alter the dynamics of point defects moving on a disclination line. They exert a constant force on defects, leading to the bimodal distribution of distances between them at long times. The evolution of the system of defects in the presence of chiral additives provides a very direct proof of the existence of repulsive forces between the defects at large distances. We find that addition of a sufficient amount of chiral compound removes all point defects from the system. The process is studied in the system of 8CB (4-n-octyl-4 '-cyanobiphenyl) dop…
Non-equilibrium dynamics of topological defects can be used as a fundamental propulsion mechanism in microscopic active matter. Here, we demonstrate swimming of topological defect-propelled colloidal particles in (passive) nematic fluids through experiments and numerical simulations. Dynamic swim strokes of the topological defects are driven by colloidal rotation in an external magnetic field, causing periodic defect rearrangement which propels the particles. The swimming velocity is determined by the colloid's angular velocity, sense of rotation and defect polarity. By controlling them we can…
Using Monte Carlo simulations of the Lebwohl--Lasher model we study the director ordering in a nematic cell where the top and bottom surfaces are patterned with a lattice of $\pm 1$ point topological defects of lattice spacing $a$. We find that the nematic order depends crucially on the ratio of the height of the cell $H$ to $a$. When $H/a \gtrsim 0.9$ the system is very well--ordered and the frustration induced by the lattice of defects is relieved by a network of half--integer defect lines which emerge from the point defects and hug the top and bottom surfaces of the cell. When $H/a \lesssim…
Topological defects are singularities in material fields that play a vital role across a range of systems: from cosmic microwave background polarization to superconductors, and biological materials. Although topological defects and their mutual interactions have been extensively studied, little is known about the interplay between defects in different fields -- especially when they co-evolve -- within the same physical system. Here, using nematic microfluidics, we study the cross-talk of topological defects in two different material fields -- the velocity field and the molecular orientational …
We numerically investigate how spatial variations of extensile or contractile active stress affect bulk active nematic systems in two and three dimensions. In the absence of defects, activity gradients drive flows which re-orient the nematic director field and thus act as an effective anchoring force. At high activity, defects are created and the system transitions into active turbulence, a chaotic flow state characterized by strong vorticity. We find that in two-dimensional (2D) systems active torques robustly align $+1/2$ defects parallel to activity gradients, with defect heads pointing tow…
Nontrivial shape of colloidal particles create complex elastic distortions and topological defects in liquid crystals and play a key role in governing their electrophoretic propulsion through the medium. Here, we report experimental results on defects and electrophoretic transport of anisometric (snowman-shaped) dielectric particles subjected to an alternating electric field perpendicular to the director in a nematic liquid crystal. We demonstrate that the shape asymmetry gives rise to defect-polymorphism by nucleating point or ring defects at multiple locations on the particle and controls th…
We investigate the correlation between the point disclination energies and the surface curvature modulation of nematic liquid crystal membranes with a Gaussian bump geometry. Due to the correlation, disclinations feel an attractive force that confines them to an annulus region, resulting in a halo distribution around the top of the bump. The halo formation is a direct consequence of the nonzero Gaussian curvature of the bump that affects preferable configurations of liquid crystal molecules around the disclination core.
We investigated the nematic ordering on a torus by means of analytic method and the method of simulated annealing, the Frank free energy, both in the standard form and covariant form, were used in the study. The defect free state was found to be the ground state in both cases. However, in the case of the standard model, there are two kinds of defective free ordering and a transition between the two occurs at a critical value of radius ratio $k=\frac{r}{R}$. The first one is $θ=0$ in the small $k$ regime and the second one is a variable $θ$ with position of the torus. In the case of the covaria…
We analyze the phase behavior of lyotropic nematic liquid crystals in the self-organizing flow, viz. so called active nematics (AN). Their elastic properties are mutually caused by evolution of topological defects (for instance, disclinations and boojums) and the flow regime. Such changes in elasticity of AN comparing with conventional inactive ones set the new working characteristics of these materials, have an influence on their switchable and tunable properties. In this work, we study the uniaxial droplet AN phases with topological defects in their collective flow, we apply the gauge string…
We use density--functional theory to study the structure of two-dimensional defects inside a circular nematic nanocavity. The density, nematic order parameter, and director fields, as well as the defect core energy and core radius, are obtained in a thermodynamically consistent way for defects with topological charge $k=+1$ (with radial and tangential symmetries) and $k=+1/2$. An independent calculation of the fluid elastic constants, within the same theory, allows us to connect with the local free--energy density predicted by elastic theory, which in turn provides a criterion to define a defe…
We study the organization of topological defects in a system of nematogens confined to the two-dimensional sphere (S^2). We first perform Monte Carlo simulations of a fluid system of hard rods (spherocylinders) living in the tangent plane of S^2. The sphere is adiabatically compressed until we reach a jammed nematic state with maximum packing density. The nematic state exhibits four +1/2 disclinations arrayed on a great circle rather than at the vertices of a regular tetrahedron. This arises from the high elastic anisotropy of the system in which splay (K_1) is far softer than bending (K_3). W…
We describe the geometry of bend distortions in twist-bend nematic liquid crystals in terms of their fundamental degeneracies, which we call $β$ lines. These represent a new class of line-like topological defect. We use them to construct and characterise novel structures, including grain boundary and focal conic smectic-like defects, Skyrmions, and knotted merons. We analyse their local geometry and global structure, showing that their intersection with any surface is twice the Skyrmion number. Finally, we demonstrate how arbitrary knots and links can be created and describe them in terms of m…
We develop a description of defect loops in three-dimensional active nematics based on a multipole expansion of the far-field director and show how this leads to a self-dynamics dependent on the loop's geometric type. The dipole term leads to active stresses that generate a global self-propulsion for splay and bend loops. The quadrupole moment is non-zero only for non-planar loops and generates a net `active torque', such that defect loops are both self-motile and self-orienting. Our analysis identifies right- and left-handed twist loops as the only force and torque free geometries, suggesting…
We present a novel, self-consistent and robust theoretical model to investigate elastic interactions between topological defects in liquid crystal shells. Accounting for the non-concentric nature of the shell in a simple manner, we are able to successfully and accurately explain and predict the positions of the defects, most relevant in the context of colloidal self-assembly. We calibrate and test our model on existing experimental data, and extend it to all newly observed defects configurations in chiral nematic shells. We perform new experiments to check further and confirm the validity of t…
Light traveling through a liquid crystal with disclinations perceives a geometrical background which causes lensing effects similar to the ones predicted for cosmic objects like global monopoles and cosmic strings. In this article we explore the effective geometry as perceived by light in such media. The comparison between both systems suggests that experiments can be done in the laboratory to simulate optical properties, like gravitational lensing, of cosmic objects.
Motivated by recent experiments on the rod-like virus bacteriophage fd, confined to circular and annular domains, we present a theoretical study of structural transitions in these geometries. Using the continuum theory of nematic liquid crystals, we examine the competition between bulk elasticity and surface anchoring, mediated by the formation of topological defects. We show analytically that bulk defects are unstable with respect to defects sitting at the boundary. Moreover, in case of an annulus, whose topology does not require the presence of topological defects, under weak anchoring condi…
In a sharp contrast to the response of silica particles we show that the metal-dielectric Janus particles with boojum defects in a nematic liquid crystal are self-propelled under the action of an electric field applied perpendicular to the director. The particles can be transported along any direction in the plane of the sample by selecting the appropriate orientation of the Janus vector with respect to the director. The direction of motion of the particles is controllable by varying the field amplitude and frequency. The command demonstrated on the motility of the particles is promising for t…
The motion of topological defects is an important feature of the dynamics of all liquid crystals, and is especially conspicuous in active liquid crystals. Understanding defect motion is a challenging theoretical problem, because the dynamics of orientational order is coupled with backflow of the fluid, and because a liquid crystal has several distinct viscosity coefficients. Here, we suggest a coarse-grained, variational approach, which describes the motion of defects as effective `particles.' For passive liquid crystals, the theory shows how the drag depends on defect orientation, and shows t…
We present a novel framework for the study of disclinations in two-dimensional active nematic liquid crystals, and topological defects in general. The order tensor formalism is used to calculate exact multi-particle solutions of the linearized static equations inside a uniformly aligned state. Topological charge conservation requires a fixed difference between the number of half charges. Starting from a set of hydrodynamic equations, we derive a low-dimensional dynamical system for the parameters of the static solutions, which describes the motion of a half-disclination pair, or of several pai…
Using novel micro-printing techniques, we develop a versatile experimental setup that allows us to study how lateral confinement tames the active flows and defect properties of the microtubule/kinesin active nematic system. We demonstrate that the active length scale that determines the self-organization of this system in unconstrained geometries loses its relevance under strong lateral confinement. Dramatic transitions are observed from chaotic to vortex lattices and defect-free unidirectional flows. Defects, which determine the active flow behavior, are created and annihilated on the channel…
