Factor copula models for item response data are more interpretable and fit better than (truncated) vine copula models when dependence can be explained through latent variables, but are not robust to violations of conditional independence. To circumvent these issues, truncated vines and factor copula models for item response data are joined to define a combined model, the so-called factor tree copula model, with individual benefits from each of the two approaches. Rather than adding factors and causing computational problems and difficulties in interpretation and identification, a truncated vine structure is assumed on the residuals conditional on one or two latent variables. This structure can be better explained as a conditional dependence given a few interpretable latent variables. On the one hand, the parsimonious feature of factor models remains intact and any residual dependencies are being taken into account on the other. We discuss estimation along with model selection. In particular, we propose model selection algorithms to choose a plausible factor tree copula model to capture the (residual) dependencies among the item responses. Our general methodology is demonstrated with an extensive simulation study and illustrated by analyzing Post Traumatic Stress Disorder.
Bi-factor and second-order models based on copulas are proposed for item response data, where the items can be split into non-overlapping groups such that there is a homogeneous dependence within each group. Our general models include the Gaussian bi-factor and second-order models as special cases and can lead to more probability in the joint upper or lower tail compared with the Gaussian bi-factor and second-order models. Details on maximum likelihood estimation of parameters for the bi-factor and second-order copula models are given, as well as model selection and goodness-of-fit techniques.…
Vine copulas are a flexible way for modeling dependences using only pair-copulas as building blocks. However if the number of variables grows the problem gets fast intractable. For dealing with this problem Brechmann at al. proposed the truncated R-vine copulas. The truncated R-vine copula has the very useful property that it can be constructed by using only pair-wise copulas, and conditional pair-wise copulas. In our earlier papers we introduced the concept of cherry-tree copulas. In this paper we characterize the relation between the cherry-tree copulas and the truncated R-vine copulas. Both…
Vine copulas are pair-copula constructions enabling multivariate dependence modeling in terms of bivariate building blocks. One of the main tasks of fitting a vine copula is the selection of a suitable tree structure. For this the prevalent method is a heuristic called Dißmann's algorithm. It sequentially constructs the vine's trees by maximizing dependence at each tree level, where dependence is measured in terms of absolute Kendall's $τ$. However, the algorithm disregards any implications of the tree structure on the simplifying assumption that is usually made for vine copulas to keep infere…
We propose a novel Dirichlet-based Pólya tree (D-P tree) prior on the copula and based on the D-P tree prior, a nonparametric Bayesian inference procedure. Through theoretical analysis and simulations, we are able to show that the flexibility of the D-P tree prior ensures its consistency in copula estimation, thus able to detect more subtle and complex copula structures than earlier nonparametric Bayesian models, such as a Gaussian copula mixture. Further, the continuity of the imposed D-P tree prior leads to a more favorable smoothing effect in copula estimation over classic frequentist metho…
One of the features inherent in nested Archimedean copulas, also called hierarchical Archimedean copulas, is their rooted tree structure. A nonparametric, rank-based method to estimate this structure is presented. The idea is to represent the target structure as a set of trivariate structures, each of which can be estimated individually with ease. Indeed, for any three variables there are only four possible rooted tree structures and, based on a sample, a choice can be made by performing comparisons between the three bivariate margins of the empirical distribution of the three variables. The s…
Any nested Archimedean copula is defined starting from a rooted phylogenetic tree, for which a new class of nonparametric estimators is presented. An estimator from this new class relies on a two-step procedure where first a binary tree is built and second is collapsed if necessary to give an estimate of the target tree structure. Several examples of estimators from this class are given and the performance of each of these estimators, as well as of the only known comparable estimator, is assessed by means of a simulation study involving target structures in various dimensions, showing that the…
In this paper we propose a flexible class of multivariate nonlinear non-Gaussian state space models, based on copulas. More precisely, we assume that the observation equation and the state equation are defined by copula families that are not necessarily equal. For each time point, the resulting model can be described by a C-vine copula truncated after the first tree, where the root node is represented by the latent state. Inference is performed within the Bayesian framework, using the Hamiltonian Monte Carlo method, where a further D-vine truncated after the first tree is used as prior distrib…
We propose a class of dynamic vine copula models. This is an extension of static vine copulas and a generalization of dynamic C-vine and D-vine copulas studied by Almeida et al (2016) and Goel and Mehra (2019). Within this class, we allow for time-varying dependence by driving the vine copula parameters with latent AR(1) processes. This modeling approach is very flexible but estimation is not straightforward due to the high-dimensional parameter space. We propose a Bayesian estimation approach, which relies on a novel approximation of the posterior distribution. This approximation allows to us…
Vine copulas constitute a flexible way for modeling of dependences using only pair copulas as building blocks. The pair-copula constructions introduced by Joe (1997) are able to encode more types of dependences in the same time since they can be expressed as a product of different types of bi-variate copulas. The Regular-vine structures (R-vines), as pair copulas corresponding to a sequence of trees, have been introduced by Bedford and Cooke (2001, 2002) and further explored by Kurowicka and Cooke (2006). The complexity of these models strongly increases in larger dimensions. Therefore the so …
Various methods to detect differential item functioning (DIF) in item response models are available. However, most of the methods assume that the responses are binary, for ordered response categories available methods are scarce. In the present paper DIF in the widely used partial credit model is investigated. An item-focussed tree is proposed that allows to detect DIF-items, which might affect the performance of the partial credit model. The method uses tree methodology yielding a tree for each item that is detected as DIF-item. The resulting trees show which variables induce DIF and in which…
We propose a novel structure selection method for high dimensional (d > 100) sparse vine copulas. Current sequential greedy approaches for structure selection require calculating spanning trees in hundreds of dimensions and fitting the pair copulas and their parameters iteratively throughout the structure selection process. Our method uses a connection between the vine and structural equation models (SEMs). The later can be estimated very fast using the Lasso, also in very high dimensions, to obtain sparse models. Thus, we obtain a structure estimate independently of the chosen pair copulas an…
A new method for the identification of differential item functioning (DIF) by using recursive partitioning techniques is proposed. We assume an extension of the Rasch model that allows for DIF being induced by an arbitrary number of covariates for each item. Recursive partitioning on the item level results in one tree for each item and leads to simultaneous selection of items and variables that induce DIF. For each item it is possible to detect groups of subjects with different item difficulties, defined by combinations of characteristics that are not pre-specified. An algorithm is proposed th…
Detection of differential item functioning by use of the logistic modelling approach has a long tradition. One big advantage of the approach is that it can be used to investigate non-uniform DIF as well as uniform DIF. The classical approach allows to detect DIF by distinguishing between multiple groups. We propose an alternative method that is a combination of recursive partitioning methods (or trees) and logistic regression methodology to detect uniform and non-uniform DIF in a nonparametric way. The output of the method are trees that visualize in a simple way the structure of DIF in an ite…
Testing the simplifying assumption in high-dimensional vine copulas is a difficult task. Tests must be based on estimated observations and check constraints on high-dimensional distributions. So far, corresponding tests have been limited to single conditional copulas with a low-dimensional set of conditioning variables. We propose a novel testing procedure that is computationally feasible for high-dimensional data sets and that exhibits a power that decreases only slightly with the dimension. By discretizing the support of the conditioning variables and incorporating a penalty in the test stat…
Microorganisms play a critical role in host health. The advancement of high-throughput sequencing technology provides opportunities for a deeper understanding of microbial interactions. However, due to the limitations of 16S ribosomal RNA sequencing, microbiome data are zero-inflated, and a quantitative comparison of microbial abundances cannot be made across subjects. By leveraging a recent microbiome profiling technique that quantifies 16S ribosomal RNA microbial counts, we propose a novel Bayesian graphical model that incorporates microorganisms' evolutionary history through a phylogenetic …
Quantile regression is a field with steadily growing importance in statistical modeling. It is a complementary method to linear regression, since computing a range of conditional quantile functions provides a more accurate modelling of the stochastic relationship among variables, especially in the tails. We introduce a non-restrictive and highly flexible nonparametric quantile regression approach based on C- and D-vine copulas. Vine copulas allow for separate modeling of marginal distributions and the dependence structure in the data, and can be expressed through a graph theoretical model give…
A common framework is provided that comprises classical ordinal item response models as the cumulative, sequential and adjacent categories models as well as nominal response models and item response tree models. The taxonomy is based on the ways binary models can be seen as building blocks of the various models. In particular one can distinguish between conditional and unconditional model components. Conditional models are by far the larger class of models containing the adjacent categories model and the whole class of hierarchically structured models. The latter is introduced as a class of mo…
Analysis of sample survey data often requires adjustments to account for missing data in the outcome variables of principal interest. Standard adjustment methods based on item imputation or on propensity weighting factors rely heavily on the availability of auxiliary variables for both responding and non-responding units. Application of these adjustment methods can be especially challenging in cases for which the auxiliary variables are numerous and are themselves subject to substantial incomplete-data problems. This paper shows how classification and regression trees and forests can overcome …
