arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 2106.04880cs.LGq-bio.QM
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自我改进的逆合成规划

Self-Improved Retrosynthetic Planning

Korea Advanced Institute of Science and Technology (KAIST)(韩国科学技术院);Mohamed bin Zayed University of Artificial Intelligence (MBZUAI)(穆罕默德·本·扎耶德人工智能大学)

Junsu Kim, Sungsoo Ahn, Hankook Lee, Jinwoo Shin

摘要:

逆合成规划是化学中的一个基本问题,用于寻找合成目标分子的反应途径。最近,搜索算法已经显示出通过使用深度神经网络(DNN)来扩展它们的候选解来解决这个问题的有希望的结果,即,在反应途径中加入新的反应。然而,这条线上的现有工作是次优的;逆合成规划问题要求反应途径(a)由真实世界的反应表示,并且(b)使用“构建块”分子可执行,然而DNN扩展反应途径而没有完全纳入这些要求。受此启发,我们提出了一个端到端的框架,用于直接训练DNN生成具有所需特性的反应途径。我们的主要思想是基于一个自我改进的过程,训练模型模仿自己发现的成功轨迹。我们还提出了一种新的反应增强方案的基础上的前向反应模型。我们的实验表明,我们的计划显着提高了解决逆合成问题的成功率从86.84%到96.32%,同时保持DNN预测有效反应的性能。

英文摘要:

Retrosynthetic planning is a fundamental problem in chemistry for finding a pathway of reactions to synthesize a target molecule. Recently, search algorithms have shown promising results for solving this problem by using deep neural networks (DNNs) to expand their candidate solutions, i.e., adding new reactions to reaction pathways. However, the existing works on this line are suboptimal; the retrosynthetic planning problem requires the reaction pathways to be (a) represented by real-world reactions and (b) executable using "building block" molecules, yet the DNNs expand reaction pathways without fully incorporating such requirements. Motivated by this, we propose an end-to-end framework for directly training the DNNs towards generating reaction pathways with the desirable properties. Our main idea is based on a self-improving procedure that trains the model to imitate successful trajectories found by itself. We also propose a novel reaction augmentation scheme based on a forward reaction model. Our experiments demonstrate that our scheme significantly improves the success rate of solving the retrosynthetic problem from 86.84% to 96.32% while maintaining the performance of DNN for predicting valid reactions.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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