Understanding graph embedding methods and their applications
McGovern Institute for Brain Research, Massachusetts Institute of Technology（麻省理工学院麦戈文脑科学研究所）；Division of Applied Mathematics, Brown University（布朗大学应用数学系）
Graph analytics can lead to better quantitative understanding and control of complex networks, but traditional methods suffer from high computational cost and excessive memory requirements associated with the high-dimensionality and heterogeneous characteristics of industrial size networks. Graph embedding techniques can be effective in converting high-dimensional sparse graphs into low-dimensional, dense and continuous vector spaces, preserving maximally the graph structure properties. Another type of emerging graph embedding employs Gaussian distribution-based graph embedding with important uncertainty estimation. The main goal of graph embedding methods is to pack every node's properties into a vector with a smaller dimension, hence, node similarity in the original complex irregular spaces can be easily quantified in the embedded vector spaces using standard metrics. The generated nonlinear and highly informative graph embeddings in the latent space can be conveniently used to address different downstream graph analytics tasks (e.g., node classification, link prediction, community detection, visualization, etc.). In this Review, we present some fundamental concepts in graph analytics and graph embedding methods, focusing in particular on random walk-based and neural network-based methods. We also discuss the emerging deep learning-based dynamic graph embedding methods. We highlight the distinct advantages of graph embedding methods in four diverse applications, and present implementation details and references to open-source software as well as available databases in the Appendix for the interested readers to start their exploration into graph analytics.
University of North Carolina at Charlotte（北卡罗来纳大学夏洛特分校）；Siemens Corporate Technology（西门子企业技术）
Recent advances in neural networks have solved common graph problems such as link prediction, node classification, node clustering, node recommendation by developing embeddings of entities and relations into vector spaces. Graph embeddings encode the structural information present in a graph. The encoded embeddings then can be used to predict the missing links in a graph. However, obtaining the optimal embeddings for a graph can be a computationally challenging task specially in an embedded system. Two techniques which we focus on in this work are 1) node embeddings from random walk based meth…
Microsoft Research Asia（微软亚洲研究院）；Peking University（北京大学）；Carnegie Mellon University（卡内基梅隆大学）；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Shanghai Jiao Tong University（上海交通大学）
Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides vector representations of the graph. One limitation of existing graph embedding methods is that their embedding optimization procedures are disconnected from the target application. In this paper, we propose a novel approach, namely Customized Graph Embedding (CGE) to tackle this problem. The CGE algorithm learns customized vector representations of graph no…
University of Southern California（南加州大学）；Information Sciences Institute（信息科学研究所）
Graph embedding is the task of representing nodes of a graph in a low-dimensional space and its applications for graph tasks have gained significant traction in academia and industry. The primary difference among the many recently proposed graph embedding methods is the way they preserve the inherent properties of the graphs. However, in practice, comparing these methods is very challenging. The majority of methods report performance boosts on few selected real graphs. Therefore, it is difficult to generalize these performance improvements to other types of graphs. Given a graph, it is current…
King Saud University（沙特国王大学）；College of Computer and Information Sciences（计算机与信息科学学院）
Graph embedding methods aim at finding useful graph representations by mapping nodes to a low-dimensional vector space. It is a task with important downstream applications, such as link prediction, graph reconstruction, data visualization, node classification, and language modeling. In recent years, the field of graph embedding has witnessed a shift from linear algebraic approaches towards local, gradient-based optimization methods combined with random walks and deep neural networks to tackle the problem of embedding large graphs. However, despite this improvement in the optimization tools, gr…
SGH Warsaw School of Economics（华沙经济学院）；Ryerson University（瑞尔森大学）；Tutte Institute for Mathematics and Computing（塔特数学与计算研究所）
Graph embedding is a transformation of nodes of a network into a set of vectors. A good embedding should capture the underlying graph topology and structure, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes themselves. If these objectives are achieved, an embedding is a meaningful, understandable, and often compressed representation of a network. Unfortunately, selecting the best embedding is a challenging task and very often requires domain experts. In this paper, we extend the framework for evaluating graph embeddings that was recently intro…
EPFL（洛桑联邦理工学院）；The University of Queensland（昆士兰大学）；HUST（河内科技大学）；Griffith University（格里菲斯大学）；Humboldt-Universität zu Berlin（柏林洪堡大学）
Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not scale well to large graphs. We therefore propose a framework for parallel computation of a graph embedding using a cluster of compute nodes with resource constraints. We show how to distribute any existing embedding technique by first splitting a graph for any given set of constrained compute nodes and then reconciling the embedding spaces derived for these su…
SGH Warsaw School of Economics（华沙经济学院）；Ryerson University（瑞尔森大学）；Tutte Institute for Mathematics and Computing（塔特数学与计算研究所）
Graph embedding is a transformation of vertices of a graph into set of vectors. Good embeddings should capture the graph topology, vertex-to-vertex relationship, and other relevant information about graphs, subgraphs, and vertices. If these objectives are achieved, they are meaningful, understandable, and compressed representations of networks. They also provide more options and tools for data scientists as machine learning on graphs is still quite limited. Finally, vector operations are simpler and faster than comparable operations on graphs. The main challenge is that one needs to make sure …
Luddy School of Informatics, Computing and Engineering, Indiana University（印第安纳大学勒迪信息、计算与工程学院）；Pohang University of Science and Technology（浦项科技大学）
Graph embedding maps a graph into a convenient vector-space representation for graph analysis and machine learning applications. Many graph embedding methods hinge on a sampling of context nodes based on random walks. However, random walks can be a biased sampler due to the structural properties of graphs. Most notably, random walks are biased by the degree of each node, where a node is sampled proportionally to its degree. The implication of such biases has not been clear, particularly in the context of graph representation learning. Here, we investigate the impact of the random walks' bias o…
University of Electronic Science and Technology of China（电子科技大学）；Yangtze Delta Region Institute (Huzhou), University of Electronic Science and Technology of China（电子科技大学长三角研究院（湖州））；Beijing Computational Science Research Center（北京计算科学研究中心）；City University of Hong Kong（香港城市大学）
Graphs can be used to describe complex systems. Recently, whole graph embedding (graph representation learning) can compress a graph into a compact lower-dimension vector while preserving intrinsic properties, earning much attention. However, most graph embedding methods have problems such as tedious parameter tuning or poor explanation. This paper presents a simple and hyperparameter-free whole graph embedding method based on the DHC (Degree, H-index, and Coreness) theorem and Shannon Entropy (E), abbreviated as DHC-E. The DHC-E can provide a trade-off between simplicity and quality for super…
A significant portion of the data today, e.g, social networks, web connections, etc., can be modeled by graphs. A proper analysis of graphs with Machine Learning (ML) algorithms has the potential to yield far-reaching insights into many areas of research and industry. However, the irregular structure of graph data constitutes an obstacle for running ML tasks on graphs such as link prediction, node classification, and anomaly detection. Graph embedding is a compute-intensive process of representing graphs as a set of vectors in a d-dimensional space, which in turn makes it amenable to ML tasks.…
Recently, one has seen a surge of interest in developing such methods including ones for learning such representations for (undirected) graphs (while preserving important properties). However, most of the work to date on embedding graphs has targeted undirected networks and very little has focused on the thorny issue of embedding directed networks. In this paper, we instead propose to solve the directed graph embedding problem via a two-stage approach: in the first stage, the graph is symmetrized in one of several possible ways, and in the second stage, the so-obtained symmetrized graph is emb…
The recent proliferation of publicly available graph-structured data has sparked an interest in machine learning algorithms for graph data. Since most traditional machine learning algorithms assume data to be tabular, embedding algorithms for mapping graph data to real-valued vector spaces has become an active area of research. Existing graph embedding approaches are based purely on structural information and ignore any semantic information from the underlying domain. In this paper, we demonstrate that semantic information can play a useful role in computing graph embeddings. Specifically, we …
A graph embedding algorithm embeds a graph into a low-dimensional space such that the embedding preserves the inherent properties of the graph. While graph embedding is fundamentally related to graph visualization, prior work did not exploit this connection explicitly. We develop Force2Vec that uses force-directed graph layout models in a graph embedding setting with an aim to excel in both machine learning (ML) and visualization tasks. We make Force2Vec highly parallel by mapping its core computations to linear algebra and utilizing multiple levels of parallelism available in modern processor…
Graph embedding has become a key component of many data mining and analysis systems. Current graph embedding approaches either sample a large number of node pairs from a graph to learn node embeddings via stochastic optimization or factorize a high-order proximity/adjacency matrix of the graph via computationally expensive matrix factorization techniques. These approaches typically require significant resources for the learning process and rely on multiple parameters, which limits their applicability in practice. Moreover, most of the existing graph embedding techniques operate effectively in …
University of California, Berkeley（加州大学伯克利分校）；Fudan University（复旦大学）；Alibaba Group（阿里巴巴集团）
Low-dimensional embeddings of knowledge graphs and behavior graphs have proved remarkably powerful in varieties of tasks, from predicting unobserved edges between entities to content recommendation. The two types of graphs can contain distinct and complementary information for the same entities/nodes. However, previous works focus either on knowledge graph embedding or behavior graph embedding while few works consider both in a unified way. Here we present BEM , a Bayesian framework that incorporates the information from knowledge graphs and behavior graphs. To be more specific, BEM takes as p…
A graph embedding is a representation of graph vertices in a low-dimensional space, which approximately preserves properties such as distances between nodes. Vertex sequence-based embedding procedures use features extracted from linear sequences of nodes to create embeddings using a neural network. In this paper, we propose diffusion graphs as a method to rapidly generate vertex sequences for network embedding. Its computational efficiency is superior to previous methods due to simpler sequence generation, and it produces more accurate results. In experiments, we found that the performance rel…
Graph embedding methods produce unsupervised node features from graphs that can then be used for a variety of machine learning tasks. Modern graphs, particularly in industrial applications, contain billions of nodes and trillions of edges, which exceeds the capability of existing embedding systems. We present PyTorch-BigGraph (PBG), an embedding system that incorporates several modifications to traditional multi-relation embedding systems that allow it to scale to graphs with billions of nodes and trillions of edges. PBG uses graph partitioning to train arbitrarily large embeddings on either a…
University of Cambridge（剑桥大学）；Imperial College London（帝国理工学院）
Current graph representation learning techniques use Graph Neural Networks (GNNs) to extract features from dataset embeddings. In this work, we examine the quality of these embeddings and assess how changing them can affect the accuracy of GNNs. We explore different embedding extraction techniques for both images and texts; and find that the performance of different GNN architectures is dependent on the embedding style used. We see a prevalence of bag of words (BoW) embeddings and text classification tasks in available graph datasets. Given the impact embeddings has on GNN performance. this le…
Node embedding is a central topic in graph representation learning. Computational efficiency and scalability can be challenging to any method that requires full-graph operations. We propose sampling approaches to node embedding, with or without explicit modelling of the feature vector, which aim to extract useful information from both the eigenvectors related to the graph Laplacien and the given values associated with the graph.
Tsinghua-Berkeley Shenzhen Institute, Tsinghua University（清华大学清华-伯克利深圳学院）；Tencent AI Lab（腾讯人工智能实验室）；Department of Computer Science and Technology, Tsinghua University（清华大学计算机科学与技术系）
With the great success of graph embedding model on both academic and industry area, the robustness of graph embedding against adversarial attack inevitably becomes a central problem in graph learning domain. Regardless of the fruitful progress, most of the current works perform the attack in a white-box fashion: they need to access the model predictions and labels to construct their adversarial loss. However, the inaccessibility of model predictions in real systems makes the white-box attack impractical to real graph learning system. This paper promotes current frameworks in a more general and…
Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques aim to automatically create a low-dimensional representation of a given graph, which captures key structural elements in the resulting embedding space. However, to date, there has been little work exploring exactly which topological structures are being learned in the embeddings process. In this paper, we investigate if graph embeddings are approximating somet…
Graph autoencoders (GAEs) are powerful tools in representation learning for graph embedding. However, the performance of GAEs is very dependent on the quality of the graph structure, i.e., of the adjacency matrix. In other words, GAEs would perform poorly when the adjacency matrix is incomplete or be disturbed. In this paper, two novel unsupervised graph embedding methods, unsupervised graph embedding via adaptive graph learning (BAGE) and unsupervised graph embedding via variational adaptive graph learning (VBAGE) are proposed. The proposed methods expand the application range of GAEs on grap…
IBM Research（IBM研究院）；CMU（卡内基梅隆大学）；WUSTL（华盛顿大学圣路易斯分校）；GMU（乔治梅森大学）；UDEL（特拉华大学）；Huawei（华为）
Graph kernels are widely used for measuring the similarity between graphs. Many existing graph kernels, which focus on local patterns within graphs rather than their global properties, suffer from significant structure information loss when representing graphs. Some recent global graph kernels, which utilizes the alignment of geometric node embeddings of graphs, yield state-of-the-art performance. However, these graph kernels are not necessarily positive-definite. More importantly, computing the graph kernel matrix will have at least quadratic {time} complexity in terms of the number and the s…
University of Technology Sydney（悉尼科技大学）；University of New South Wales（新南威尔士大学）
Graph embedding is an effective method to represent graph data in a low dimensional space for graph analytics. Most existing embedding algorithms typically focus on preserving the topological structure or minimizing the reconstruction errors of graph data, but they have mostly ignored the data distribution of the latent codes from the graphs, which often results in inferior embedding in real-world graph data. In this paper, we propose a novel adversarial graph embedding framework for graph data. The framework encodes the topological structure and node content in a graph to a compact representa…
Cornell University（康奈尔大学）；Michigan Technological University（密歇根理工大学）；Stevens Institute of Technology（史蒂文斯理工学院）
Graph embedding techniques have been increasingly deployed in a multitude of different applications that involve learning on non-Euclidean data. However, existing graph embedding models either fail to incorporate node attribute information during training or suffer from node attribute noise, which compromises the accuracy. Moreover, very few of them scale to large graphs due to their high computational complexity and memory usage. In this paper we propose GraphZoom, a multi-level framework for improving both accuracy and scalability of unsupervised graph embedding algorithms. GraphZoom first p…
Graph embedding methods transform high-dimensional and complex graph contents into low-dimensional representations. They are useful for a wide range of graph analysis tasks including link prediction, node classification, recommendation and visualization. Most existing approaches represent graph nodes as point vectors in a low-dimensional embedding space, ignoring the uncertainty present in the real-world graphs. Furthermore, many real-world graphs are large-scale and rich in content (e.g. node attributes). In this work, we propose GLACE, a novel, scalable graph embedding method that preserves …
University of Chinese Academy of Sciences (UCAS)（中国科学院大学）；Institution of Automation Chinese Academy of Sciences (CASIA)（中国科学院自动化研究所）；National Laboratory of Pattern Recognition (NLPR)（模式识别国家重点实验室）；School of Cyber Security, University of Chinese Academy of Sciences（中国科学院大学网络空间安全学院）
Graph embedding, aiming to learn low-dimensional representations (aka. embeddings) of nodes, has received significant attention recently. Recent years have witnessed a surge of efforts made on static graphs, among which Graph Convolutional Network (GCN) has emerged as an effective class of models. However, these methods mainly focus on the static graph embedding. In this work, we propose an efficient dynamic graph embedding approach, Dynamic Graph Convolutional Network (DyGCN), which is an extension of GCN-based methods. We naturally generalizes the embedding propagation scheme of GCN to dynam…
University of Illinois at Chicago（伊利诺伊大学芝加哥分校）；Shanghai Institute for Advanced Communication and Data Science, Fudan University（复旦大学上海先进通信与数据科学研究院）；Cornell University（康奈尔大学）；Northwestern University（西北大学）
Multi-view graph embedding has become a widely studied problem in the area of graph learning. Most of the existing works on multi-view graph embedding aim to find a shared common node embedding across all the views of the graph by combining the different views in a specific way. Hub detection, as another essential topic in graph mining has also drawn extensive attentions in recent years, especially in the context of brain network analysis. Both the graph embedding and hub detection relate to the node clustering structure of graphs. The multi-view graph embedding usually implies the node cluste…
Jilin University（吉林大学）；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）
Recent research on graph embedding has achieved success in various applications. Most graph embedding methods preserve the proximity in a graph into a manifold in an embedding space. We argue an important but neglected problem about this proximity-preserving strategy: Graph topology patterns, while preserved well into an embedding manifold by preserving proximity, may distort in the ambient embedding Euclidean space, and hence to detect them becomes difficult for machine learning models. To address the problem, we propose curvature regularization, to enforce flatness for embedding manifolds, t…
HRL Laboratories, LLC.（HRL有限责任公司）；University of Virginia（弗吉尼亚大学）
We present Wasserstein Embedding for Graph Learning (WEGL), a novel and fast framework for embedding entire graphs in a vector space, in which various machine learning models are applicable for graph-level prediction tasks. We leverage new insights on defining similarity between graphs as a function of the similarity between their node embedding distributions. Specifically, we use the Wasserstein distance to measure the dissimilarity between node embeddings of different graphs. Unlike prior work, we avoid pairwise calculation of distances between graphs and reduce the computational complexity …
University of Minnesota（明尼苏达大学）；BlueLightAI, Inc.（BlueLightAI公司）
Knowledge graph embedding involves learning representations of entities -- the vertices of the graph -- and relations -- the edges of the graph -- such that the resulting representations encode the known factual information represented by the knowledge graph and can be used in the inference of new relations. We show that knowledge graph embedding is naturally expressed in the topological and categorical language of \textit{cellular sheaves}: a knowledge graph embedding can be described as an approximate global section of an appropriate \textit{knowledge sheaf} over the graph, with consistency …
Knowledge graph embedding has recently become a popular way to model relations and infer missing links. In this paper, we present a group theoretical perspective of knowledge graph embedding, connecting previous methods with different group actions. Furthermore, by utilizing Schur's lemma from group representation theory, we show that the state of the art embedding method RotatE can model relations from any finite Abelian group.
Graph embedding techniques are pivotal in real-world machine learning tasks that operate on graph-structured data, such as social recommendation and protein structure modeling. Embeddings are mostly performed on the node level for learning representations of each node. Since the formation of a graph is inevitably affected by certain sensitive node attributes, the node embeddings can inherit such sensitive information and introduce undesirable biases in downstream tasks. Most existing works impose ad-hoc constraints on the node embeddings to restrict their distributions for unbiasedness/fairnes…
Netflix Inc.（奈飞公司）；IBM India Research Laboratory（IBM印度研究院）
Just as semantic hashing can accelerate information retrieval, binary valued embeddings can significantly reduce latency in the retrieval of graphical data. We introduce a simple but effective model for learning such binary vectors for nodes in a graph. By imagining the embeddings as independent coin flips of varying bias, continuous optimization techniques can be applied to the approximate expected loss. Embeddings optimized in this fashion consistently outperform the quantization of both spectral graph embeddings and various learned real-valued embeddings, on both ranking and pre-ranking tas…
University of Calabria（卡拉布里亚大学）；University of Rome La Sapienza（罗马大学（罗马第一大学））
Graph embedding techniques allow to learn high-quality feature vectors from graph structures and are useful in a variety of tasks, from node classification to clustering. Existing approaches have only focused on learning feature vectors for the nodes in a (knowledge) graph. To the best of our knowledge, none of them has tackled the problem of embedding of graph edges, that is, knowledge graph triples. The approaches that are closer to this task have focused on homogeneous graphs involving only one type of edge and obtain edge embeddings by applying some operation (e.g., average) on the embeddi…
Entity Resolution (ER) is a constitutional part for integrating different knowledge graphs in order to identify entities referring to the same real-world object. A promising approach is the use of graph embeddings for ER in order to determine the similarity of entities based on the similarity of their graph neighborhood. The similarity computations for such embeddings translates to calculating the distance between them in the embedding space which is comparatively simple. However, previous work has shown that the use of graph embeddings alone is not sufficient to achieve high ER quality. We th…
Learning powerful data embeddings has become a center piece in machine learning, especially in natural language processing and computer vision domains. The crux of these embeddings is that they are pretrained on huge corpus of data in a unsupervised fashion, sometimes aided with transfer learning. However currently in the graph learning domain, embeddings learned through existing graph neural networks (GNNs) are task dependent and thus cannot be shared across different datasets. In this paper, we present a first powerful and theoretically guaranteed graph neural network that is designed to lea…
Learning knowledge graph embedding from an existing knowledge graph is very important to knowledge graph completion. For a fact $(h,r,t)$ with the head entity $h$ having a relation $r$ with the tail entity $t$, the current approaches aim to learn low dimensional representations $(\mathbf{h},\mathbf{r},\mathbf{t})$, each of which corresponds to the elements in $(h, r, t)$, respectively. As $(\mathbf{h},\mathbf{r},\mathbf{t})$ is learned from the existing facts within a knowledge graph, these representations can not be used to detect unknown facts (if the entities or relations never occur in the…
Generative models of graph structure have applications in biology and social sciences. The state of the art is GraphRNN, which decomposes the graph generation process into a series of sequential steps. While effective for modest sizes, it loses its permutation invariance for larger graphs. Instead, we present a permutation invariant latent-variable generative model relying on graph embeddings to encode structure. Using tools from the random graph literature, our model is highly scalable to large graphs with likelihood evaluation and generation in $O(|V | + |E|)$.
Nara Institute of Science and Technology (NAIST)（奈良先端科学技术大学院大学）；Hokkaido University（北海道大学）
In this article, we explain the recent advance of subsampling methods in knowledge graph embedding (KGE) starting from the original one used in word2vec.
LASIGE；Faculdade de Ciências, Universidade de Lisboa（里斯本大学理学院）
Ontology-based approaches for predicting gene-disease associations include the more classical semantic similarity methods and more recently knowledge graph embeddings. While semantic similarity is typically restricted to hierarchical relations within the ontology, knowledge graph embeddings consider their full breadth. However, embeddings are produced over a single graph and complex tasks such as gene-disease association may require additional ontologies. We investigate the impact of employing richer semantic representations that are based on more than one ontology, able to represent both gene…
University of Bristol（布里斯托大学）；Heilbronn Institute for Mathematical Research（海尔布隆数学研究所）
Statistical analysis of a graph often starts with embedding, the process of representing its nodes as points in space. How to choose the embedding dimension is a nuanced decision in practice, but in theory a notion of true dimension is often available. In spectral embedding, this dimension may be very high. However, this paper shows that existing random graph models, including graphon and other latent position models, predict the data should live near a much lower-dimensional set. One may therefore circumvent the curse of dimensionality by employing methods which exploit hidden manifold struct…
Advanced Digital Sciences Center（先进数字科学中心）；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）
Graph embedding provides an efficient solution for graph analysis by converting the graph into a low-dimensional space which preserves the structure information. In contrast to the graph structure data, the i.i.d. node embedding can be processed efficiently in terms of both time and space. Current semi-supervised graph embedding algorithms assume the labelled nodes are given, which may not be always true in the real world. While manually label all training data is inapplicable, how to select the subset of training data to label so as to maximize the graph analysis task performance is of great …
Aristotle University of Thessaloniki（塞萨洛尼基亚里士多德大学）；Duke University（杜克大学）
We introduce a nonlinear method for directly embedding large, sparse, stochastic graphs into low-dimensional spaces, without requiring vertex features to reside in, or be transformed into, a metric space. Graph data and models are prevalent in real-world applications. Direct graph embedding is fundamental to many graph analysis tasks, in addition to graph visualization. We name the novel approach SG-t-SNE, as it is inspired by and builds upon the core principle of t-SNE, a widely used method for nonlinear dimensionality reduction and data visualization. We also introduce t-SNE-$Π$, a high-perf…
This paper considers the problem of embedding directed graphs in Euclidean space while retaining directional information. We model a directed graph as a finite set of observations from a diffusion on a manifold endowed with a vector field. This is the first generative model of its kind for directed graphs. We introduce a graph embedding algorithm that estimates all three features of this model: the low-dimensional embedding of the manifold, the data density and the vector field. In the process, we also obtain new theoretical results on the limits of "Laplacian type" matrices derived from direc…
University of Edinburgh（爱丁堡大学）；Samsung AI Centre（三星人工智能中心）
Hyperbolic embeddings have recently gained attention in machine learning due to their ability to represent hierarchical data more accurately and succinctly than their Euclidean analogues. However, multi-relational knowledge graphs often exhibit multiple simultaneous hierarchies, which current hyperbolic models do not capture. To address this, we propose a model that embeds multi-relational graph data in the Poincaré ball model of hyperbolic space. Our Multi-Relational Poincaré model (MuRP) learns relation-specific parameters to transform entity embeddings by Möbius matrix-vector multiplication…
Graph Embedding in the Graph Fractional Fourier Transform Domain
School of Mathematics and Statistics, Nanjing University of Information Science and Technology（南京信息工程大学数学与统计学学院）；Hubei Key Laboratory of Applied Mathematics, Hubei University（湖北省应用数学重点实验室）；Key Laboratory of System Control and Information Processing, Ministry of Education, Shanghai Jiao Tong University（教育部系统控制与信息处理重点实验室，上海交通大学）；Nanjing Institute of Technology（南京理工大学）；Jiangsu Province Engineering Research Center of IntelliSense Technology and System, Nanjing（江苏省智能感知技术与系统工程研究中心，南京）
University of Electronic Science and Technology of China（电子科技大学）
As a pivotal tool to alleviate the information overload problem, recommender systems aim to predict user's preferred items from millions of candidates by analyzing observed user-item relations. As for alleviating the sparsity and cold start problems encountered by recommender systems, researchers resort to employing side information or knowledge in recommendation as a strategy for uncovering hidden (indirect) user-item relations, aiming to enrich observed information (or data) for recommendation. However, in the face of the high complexity and large scale of side information and knowledge, thi…
Learning unsupervised node embeddings facilitates several downstream tasks such as node classification and link prediction. A node embedding is universal if it is designed to be used by and benefit various downstream tasks. This work introduces PanRep, a graph neural network (GNN) model, for unsupervised learning of universal node representations for heterogenous graphs. PanRep consists of a GNN encoder that obtains node embeddings and four decoders, each capturing different topological and node feature properties. Abiding to these properties the novel unsupervised framework learns universal e…
University of Electronic Science and Technology of China（电子科技大学）；Georgia State University（佐治亚州立大学）
Recently, the surge in popularity of Internet of Things (IoT), mobile devices, social media, etc. has opened up a large source for graph data. Graph embedding has been proved extremely useful to learn low-dimensional feature representations from graph structured data. These feature representations can be used for a variety of prediction tasks from node classification to link prediction. However, existing graph embedding methods do not consider users' privacy to prevent inference attacks. That is, adversaries can infer users' sensitive information by analyzing node representations learned from …
Technische Universität Berlin（柏林工业大学）；Sapienza University of Rome（罗马第一大学）
Knowledge graph completion (a.k.a.~link prediction), i.e.,~the task of inferring missing information from knowledge graphs, is a widely used task in many applications, such as product recommendation and question answering. The state-of-the-art approaches of knowledge graph embeddings and/or rule mining and reasoning are data-driven and, thus, solely based on the information the input knowledge graph contains. This leads to unsatisfactory prediction results which make such solutions inapplicable to crucial domains such as healthcare. To further enhance the accuracy of knowledge graph completion…
This paper presents $μ\text{KG}$, an open-source Python library for representation learning over knowledge graphs. $μ\text{KG}$ supports joint representation learning over multi-source knowledge graphs (and also a single knowledge graph), multiple deep learning libraries (PyTorch and TensorFlow2), multiple embedding tasks (link prediction, entity alignment, entity typing, and multi-source link prediction), and multiple parallel computing modes (multi-process and multi-GPU computing). It currently implements 26 popular knowledge graph embedding models and supports 16 benchmark datasets. $μ\text…
