A graph embedding is a representation of graph vertices in a low-dimensional space, which approximately preserves properties such as distances between nodes. Vertex sequence-based embedding procedures use features extracted from linear sequences of nodes to create embeddings using a neural network. In this paper, we propose diffusion graphs as a method to rapidly generate vertex sequences for network embedding. Its computational efficiency is superior to previous methods due to simpler sequence generation, and it produces more accurate results. In experiments, we found that the performance relative to other methods improves with increasing edge density in the graph. In a community detection task, clustering nodes in the embedding space produces better results compared to other sequence-based embedding methods.
Technical University of Denmark（丹麦技术大学）；Paris-Saclay University（巴黎萨克雷大学）；CentraleSupélec（中央理工-高等电力学院）；Inria（法国国家信息与自动化研究所）；Aristotle University of Thessaloniki（塞萨洛尼基亚里士多德大学）
Graph Representation Learning (GRL) has become a key paradigm in network analysis, with a plethora of interdisciplinary applications. As the scale of networks increases, most of the widely used learning-based graph representation models also face computational challenges. While there is a recent effort toward designing algorithms that solely deal with scalability issues, most of them behave poorly in terms of accuracy on downstream tasks. In this paper, we aim to study models that balance the trade-off between efficiency and accuracy. In particular, we propose NodeSig, a scalable model that co…
This paper shows that a simple baseline based on a Bag-of-Words (BoW) representation learns surprisingly good knowledge graph embeddings. By casting knowledge base completion and question answering as supervised classification problems, we observe that modeling co-occurences of entities and relations leads to state-of-the-art performance with a training time of a few minutes using the open sourced library fastText.
Dartmouth College（达特茅斯学院）；Millennium Management, LLC（千禧管理有限责任公司）；Georgia Institute of Technology（佐治亚理工学院）
Recent years have seen a rise in the development of representational learning methods for graph data. Most of these methods, however, focus on node-level representation learning at various scales (e.g., microscopic, mesoscopic, and macroscopic node embedding). In comparison, methods for representation learning on whole graphs are currently relatively sparse. In this paper, we propose a novel unsupervised whole graph embedding method. Our method uses spectral graph wavelets to capture topological similarities on each k-hop sub-graph between nodes and uses them to learn embeddings for the whole …
This is a tutorial and survey paper for nonlinear dimensionality and feature extraction methods which are based on the Laplacian of graph of data. We first introduce adjacency matrix, definition of Laplacian matrix, and the interpretation of Laplacian. Then, we cover the cuts of graph and spectral clustering which applies clustering in a subspace of data. Different optimization variants of Laplacian eigenmap and its out-of-sample extension are explained. Thereafter, we introduce the locality preserving projection and its kernel variant as linear special cases of Laplacian eigenmap. Versions of…
University of North Carolina at Charlotte（北卡罗来纳大学夏洛特分校）；Siemens Corporate Technology（西门子企业技术）
Recent advances in neural networks have solved common graph problems such as link prediction, node classification, node clustering, node recommendation by developing embeddings of entities and relations into vector spaces. Graph embeddings encode the structural information present in a graph. The encoded embeddings then can be used to predict the missing links in a graph. However, obtaining the optimal embeddings for a graph can be a computationally challenging task specially in an embedded system. Two techniques which we focus on in this work are 1) node embeddings from random walk based meth…
KTH Royal Institute of Technology（瑞典皇家理工学院）；SEB Group（SEB集团）
Structural node embeddings, vectors capturing local connectivity information for each node in a graph, have many applications in data mining and machine learning, e.g., network alignment and node classification, clustering and anomaly detection. For the analysis of directed graphs, e.g., transactions graphs, communication networks and social networks, the capability to capture directional information in the structural node embeddings is highly desirable, as is scalability of the embedding extraction method. Most existing methods are nevertheless only designed for undirected graph. Therefore, w…
The prediction for information diffusion on social networks has great practical significance in marketing and public opinion control. It aims to predict the individuals who will potentially repost the message on the social network. One type of method is based on demographics, complex networks and other prior knowledge to establish an interpretable model to simulate and predict the propagation process, while the other type of method is completely data-driven and maps the nodes to a latent space for propagation prediction. Existing latent space design and embedding methods lack consideration for…
Nodes residing in different parts of a graph can have similar structural roles within their local network topology. The identification of such roles provides key insight into the organization of networks and can be used for a variety of machine learning tasks. However, learning structural representations of nodes is a challenging problem, and it has typically involved manually specifying and tailoring topological features for each node. In this paper, we develop GraphWave, a method that represents each node's network neighborhood via a low-dimensional embedding by leveraging heat wavelet diffu…
University of Chinese Academy of Sciences（中国科学院大学）；Ant Financial（蚂蚁金融）
In network embedding, random walks play a fundamental role in preserving network structures. However, random walk based embedding methods have two limitations. First, random walk methods are fragile when the sampling frequency or the number of node sequences changes. Second, in disequilibrium networks such as highly biases networks, random walk methods often perform poorly due to the lack of global network information. In order to solve the limitations, we propose in this paper a network diffusion based embedding method. To solve the first limitation, our method employs a diffusion driven proc…
INRIA（法国国家信息与自动化研究所）；École normale supérieure（巴黎高等师范学院）；CNRS（法国国家科学研究中心）；PSL Research University（巴黎文理研究大学）；DeepMind（深度思维）；Massachusetts Institute of Technology（麻省理工学院）
Can continuous diffusion models bring the same performance breakthrough on natural language they did for image generation? To circumvent the discrete nature of text data, we can simply project tokens in a continuous space of embeddings, as is standard in language modeling. We propose Self-conditioned Embedding Diffusion, a continuous diffusion mechanism that operates on token embeddings and allows to learn flexible and scalable diffusion models for both conditional and unconditional text generation. Through qualitative and quantitative evaluation, we show that our text diffusion models generat…
Arizona State University（亚利桑那州立大学）；University of Southern California（南加州大学）
Embedding undirected graphs in a Euclidean space has many computational benefits. FastMap is an efficient embedding algorithm that facilitates a geometric interpretation of problems posed on undirected graphs. However, Euclidean distances are inherently symmetric and, thus, Euclidean embeddings cannot be used for directed graphs. In this paper, we present FastMap-D, an efficient generalization of FastMap to directed graphs. FastMap-D embeds vertices using a potential field to capture the asymmetry between the pairwise distances in directed graphs. FastMap-D learns a potential function to defin…
We give a fast oblivious L2-embedding of $A\in \mathbb{R}^{n x d}$ to $B\in \mathbb{R}^{r x d}$ satisfying $(1-\varepsilon)\|A x\|_2^2 \le \|B x\|_2^2 <= (1+\varepsilon) \|Ax\|_2^2.$ Our embedding dimension $r$ equals $d$, a constant independent of the distortion $\varepsilon$. We use as a black-box any L2-embedding $Π^T A$ and inherit its runtime and accuracy, effectively decoupling the dimension $r$ from runtime and accuracy, allowing downstream machine learning applications to benefit from both a low dimension and high accuracy (in prior embeddings higher accuracy means higher dimension). W…
Empowering Diffusion Models on the Embedding Space for Text Generation
School of Computer Science and Technology, University of Science and Technology of China（中国科学技术大学计算机科学与技术学院）；State Key Laboratory of Cognitive Intelligence（认知智能国家重点实验室）；Microsoft Research Asia（微软亚洲研究院）
University of Washington（华盛顿大学）；LIMSI-CNRS（法国国家科学研究中心LIMSI实验室）
Diffusion maps are an emerging data-driven technique for non-linear dimensionality reduction, which are especially useful for the analysis of coherent structures and nonlinear embeddings of dynamical systems. However, the computational complexity of the diffusion maps algorithm scales with the number of observations. Thus, long time-series data presents a significant challenge for fast and efficient embedding. We propose integrating the Nyström method with diffusion maps in order to ease the computational demand. We achieve a speedup of roughly two to four times when approximating the dominant…
Stony Brook University（石溪大学）；University of California, Los Angeles（加州大学洛杉矶分校）
We present FastRP, a scalable and performant algorithm for learning distributed node representations in a graph. FastRP is over 4,000 times faster than state-of-the-art methods such as DeepWalk and node2vec, while achieving comparable or even better performance as evaluated on several real-world networks on various downstream tasks. We observe that most network embedding methods consist of two components: construct a node similarity matrix and then apply dimension reduction techniques to this matrix. We show that the success of these methods should be attributed to the proper construction of t…
Stochastic neighbor embedding (SNE) and related nonlinear manifold learning algorithms achieve high-quality low-dimensional representations of similarity data, but are notoriously slow to train. We propose a generic formulation of embedding algorithms that includes SNE and other existing algorithms, and study their relation with spectral methods and graph Laplacians. This allows us to define several partial-Hessian optimization strategies, characterize their global and local convergence, and evaluate them empirically. We achieve up to two orders of magnitude speedup over existing training meth…
Yale University（耶鲁大学）；Utah State University（犹他州立大学）；Université de Montréal（蒙特利尔大学）
Diffusion maps are a commonly used kernel-based method for manifold learning, which can reveal intrinsic structures in data and embed them in low dimensions. However, as with most kernel methods, its implementation requires a heavy computational load, reaching up to cubic complexity in the number of data points. This limits its usability in modern data analysis. Here, we present a new approach to computing the diffusion geometry, and related embeddings, from a compressed diffusion process between data regions rather than data points. Our construction is based on an adaptation of the previously…
Sichuan University（四川大学）；University of Illinois at Chicago（伊利诺伊大学芝加哥分校）
Recently, information cascade prediction has attracted increasing interest from researchers, but it is far from being well solved partly due to the three defects of the existing works. First, the existing works often assume an underlying information diffusion model, which is impractical in real world due to the complexity of information diffusion. Second, the existing works often ignore the prediction of the infection order, which also plays an important role in social network analysis. At last, the existing works often depend on the requirement of underlying diffusion networks which are likel…
Microsoft Cloud Information Services Lab（微软云信息服务实验室）
Many modern multiclass and multilabel problems are characterized by increasingly large output spaces. For these problems, label embeddings have been shown to be a useful primitive that can improve computational and statistical efficiency. In this work we utilize a correspondence between rank constrained estimation and low dimensional label embeddings that uncovers a fast label embedding algorithm which works in both the multiclass and multilabel settings. The result is a randomized algorithm for partial least squares, whose running time is exponentially faster than naive algorithms. We demonst…
Microsoft Cloud Information Services Lab（微软云信息服务实验室）
Many modern multiclass and multilabel problems are characterized by increasingly large output spaces. For these problems, label embeddings have been shown to be a useful primitive that can improve computational and statistical efficiency. In this work we utilize a correspondence between rank constrained estimation and low dimensional label embeddings that uncovers a fast label embedding algorithm which works in both the multiclass and multilabel settings. The result is a randomized algorithm whose running time is exponentially faster than naive algorithms. We demonstrate our techniques on two …
Denoising Diffusion models are gaining increasing popularity in the field of generative modeling for several reasons, including the simple and stable training, the excellent generative quality, and the solid probabilistic foundation. In this article, we address the problem of {\em embedding} an image into the latent space of Denoising Diffusion Models, that is finding a suitable ``noisy'' image whose denoising results in the original image. We particularly focus on Denoising Diffusion Implicit Models due to the deterministic nature of their reverse diffusion process. As a side result of our in…
Halıcıoğlu Data Science Institute（哈利奇奥格鲁数据科学学院）；University of California San Diego（加利福尼亚大学圣迭戈分校）
We propose a fast, distance-preserving, binary embedding algorithm to transform a high-dimensional dataset $\mathcal{T}\subseteq\mathbb{R}^n$ into binary sequences in the cube $\{\pm 1\}^m$. When $\mathcal{T}$ consists of well-spread (i.e., non-sparse) vectors, our embedding method applies a stable noise-shaping quantization scheme to $A x$ where $A\in\mathbb{R}^{m\times n}$ is a sparse Gaussian random matrix. This contrasts with most binary embedding methods, which usually use $x\mapsto \mathrm{sign}(Ax)$ for the embedding. Moreover, we show that Euclidean distances among the elements of $\ma…
Yale University（耶鲁大学）；Université de Montréal（蒙特利尔大学）；Mila – Quebec AI Institute（米拉-魁北克人工智能研究所）
We propose a new fast method of measuring distances between large numbers of related high dimensional datasets called the Diffusion Earth Mover's Distance (EMD). We model the datasets as distributions supported on common data graph that is derived from the affinity matrix computed on the combined data. In such cases where the graph is a discretization of an underlying Riemannian closed manifold, we prove that Diffusion EMD is topologically equivalent to the standard EMD with a geodesic ground distance. Diffusion EMD can be computed in $\tilde{O}(n)$ time and is more accurate than similarly fas…
Korea University（高丽大学）；University of Michigan（密歇根大学）；Georgia Tech（佐治亚理工学院）
Embedding and visualizing large-scale high-dimensional data in a two-dimensional space is an important problem since such visualization can reveal deep insights out of complex data. Most of the existing embedding approaches, however, run on an excessively high precision, ignoring the fact that at the end, embedding outputs are converted into coarse-grained discrete pixel coordinates in a screen space. Motivated by such an observation and directly considering pixel coordinates in an embedding optimization process, we accelerate Barnes-Hut tree-based t-distributed stochastic neighbor embedding (…
Diffusion-Guided Feature Selection via Nishimori Temperature: Noise-Based Spectral Embedding
Department of Computer Science（计算机科学系）；South-West State University（西南州大学）；T8 LLC Moscow, Russia（T8 LLC莫斯科俄罗斯）；South-West State University Kursk, Russia（西南州大学库尔斯克俄罗斯）
Institute of Information Science, Academia Sinica（中央研究院信息科学研究所）；National Taiwan University（台湾大学）
Binary embedding of high-dimensional data aims to produce low-dimensional binary codes while preserving discriminative power. State-of-the-art methods often suffer from high computation and storage costs. We present a simple and fast embedding scheme by first downsampling N-dimensional data into M-dimensional data and then multiplying the data with an MxM circulant matrix. Our method requires O(N +M log M) computation and O(N) storage costs. We prove if data have sparsity, our scheme can achieve similarity-preserving well. Experiments further demonstrate that though our method is cost-effectiv…
Yale University（耶鲁大学）；Mila -- Quebec AI Institute（米拉-魁北克人工智能研究所）
In modern relational machine learning it is common to encounter large graphs that arise via interactions or similarities between observations in many domains. Further, in many cases the target entities for analysis are actually signals on such graphs. We propose to compare and organize such datasets of graph signals by using an earth mover's distance (EMD) with a geodesic cost over the underlying graph. Typically, EMD is computed by optimizing over the cost of transporting one probability distribution to another over an underlying metric space. However, this is inefficient when computing the E…
This article introduces byteSteady -- a fast model for classification using byte-level n-gram embeddings. byteSteady assumes that each input comes as a sequence of bytes. A representation vector is produced using the averaged embedding vectors of byte-level n-grams, with a pre-defined set of n. The hashing trick is used to reduce the number of embedding vectors. This input representation vector is then fed into a linear classifier. A straightforward application of byteSteady is text classification. We also apply byteSteady to one type of non-language data -- DNA sequences for gene classificati…
Comparing Baseline and Day-1 Diffusion MRI Using Multimodal Deep Embeddings for Stroke Outcome Prediction
1 Department of Computer Science, University of Geneva, Switzerland 2 Department of Electrical \& Computer Engineering, University of Florida, FL, USA 3 Service of Medical Informatics, University Hospital of Geneva, Switzerland 4 Department of Imaging；Medical Informatics, University of Geneva, Switzerland
Zhejiang University（浙江大学）；Tencent AI Lab（腾讯人工智能实验室）
Denoising diffusion probabilistic models (DDPMs) have recently achieved leading performances in many generative tasks. However, the inherited iterative sampling process costs hindered their applications to speech synthesis. This paper proposes FastDiff, a fast conditional diffusion model for high-quality speech synthesis. FastDiff employs a stack of time-aware location-variable convolutions of diverse receptive field patterns to efficiently model long-term time dependencies with adaptive conditions. A noise schedule predictor is also adopted to reduce the sampling steps without sacrificing the…
