A procedure for asymptotic bias reduction of maximum likelihood estimates of generic estimands is developed. The estimator is realized as a plug-in estimator, where the parameter maximizes the penalized likelihood with a penalty function that satisfies a quasi-linear partial differential equation of the first order. The integration of the partial differential equation with the aid of differential geometry is discussed. Applications to generalized linear models, linear mixed-effects models, and a location-scale family are presented.
We give an overview of statistical models and likelihood, together with two of its variants: penalized and hierarchical likelihood. The Kullback-Leibler divergence is referred to repeatedly, for defining the misspecification risk of a model, for grounding the likelihood and the likelihood crossvalidation which can be used for choosing weights in penalized likelihood. Families of penalized likelihood and sieves estimators are shown to be equivalent. The similarity of these likelihood with a posteriori distributions in a Bayesian approach is considered.
Penalized methods are applied to quasi likelihood analysis for stochastic differential equation models. In this paper, we treat the quasi likelihood function and the associated statistical random field for which a polynomial type large deviation inequality holds. Then penalty terms do not disturb a polynomial type large deviation inequality. This property ensures the convergence of moments of the associated estimator which plays an important role to evaluate the upper bound of the probability that model selection is incorrect.
A class of variable selection procedures for parametric models via nonconcave penalized likelihood was proposed by Fan and Li to simultaneously estimate parameters and select important variables. They demonstrated that this class of procedures has an oracle property when the number of parameters is finite. However, in most model selection problems the number of parameters should be large and grow with the sample size. In this paper some asymptotic properties of the nonconcave penalized likelihood are established for situations in which the number of parameters tends to \infty as the sample siz…
We extend the correspondence between two-stage coding procedures in data compression and penalized likelihood procedures in statistical estimation. Traditionally, this had required restriction to countable parameter spaces. We show how to extend this correspondence in the uncountable parameter case. Leveraging the description length interpretations of penalized likelihood procedures we devise new techniques to derive adaptive risk bounds of such procedures. We show that the existence of certain countable coverings of the parameter space implies adaptive risk bounds and thus our theory is quite…
Penalized likelihood methods are fundamental to ultra-high dimensional variable selection. How high dimensionality such methods can handle remains largely unknown. In this paper, we show that in the context of generalized linear models, such methods possess model selection consistency with oracle properties even for dimensionality of Non-Polynomial (NP) order of sample size, for a class of penalized likelihood approaches using folded-concave penalty functions, which were introduced to ameliorate the bias problems of convex penalty functions. This fills a long-standing gap in the literature whe…
We wish to estimate conditional density using Gaussian Mixture Regression model with logistic weights and means depending on the covariate. We aim at selecting the number of components of this model as well as the other parameters by a penalized maximum likelihood approach. We provide a lower bound on penalty, proportional up to a logarithmic term to the dimension of each model, that ensures an oracle inequality for our estimator. Our theoretical analysis is supported by some numerical experiments.
This work studies the statistical properties of the maximum penalized likelihood approach in a semi-parametric framework. We recall the penalized likelihood approach for estimating a function and review some asymptotic results. We investigate the properties of two estimators of the variance of maximum penalized likelihood estimators: sandwich estimator and a Bayesian estimator. The coverage rates of confidence intervals based on these estimators are studied through a simulation study of survival data. In a first simulation the coverage rates for the survival function and the hazard function ar…
Fan and Li propose a family of variable selection methods via penalized likelihood using concave penalty functions. The nonconcave penalized likelihood estimators enjoy the oracle properties, but maximizing the penalized likelihood function is computationally challenging, because the objective function is nondifferentiable and nonconcave. In this article, we propose a new unified algorithm based on the local linear approximation (LLA) for maximizing the penalized likelihood for a broad class of concave penalty functions. Convergence and other theoretical properties of the LLA algorithm are est…
This paper develops a general theory on rates of convergence of penalized spline estimators for function estimation when the likelihood functional is concave in candidate functions, where the likelihood is interpreted in a broad sense that includes conditional likelihood, quasi-likelihood, and pseudo-likelihood. The theory allows all feasible combinations of the spline degree, the penalty order, and the smoothness of the unknown functions. According to this theory, the asymptotic behaviors of the penalized spline estimators depends on interplay between the spline knot number and the penalty pa…
The Ising model is a useful tool for studying complex interactions within a system. The estimation of such a model, however, is rather challenging, especially in the presence of high-dimensional parameters. In this work, we propose efficient procedures for learning a sparse Ising model based on a penalized composite conditional likelihood with nonconcave penalties. Nonconcave penalized likelihood estimation has received a lot of attention in recent years. However, such an approach is computationally prohibitive under high-dimensional Ising models. To overcome such difficulties, we extend the m…
In this technical report, we consider conditional density estimation with a maximum likelihood approach. Under weak assumptions, we obtain a theoretical bound for a Kullback-Leibler type loss for a single model maximum likelihood estimate. We use a penalized model selection technique to select a best model within a collection. We give a general condition on penalty choice that leads to oracle type inequality for the resulting estimate. This construction is applied to two examples of partition-based conditional density models, models in which the conditional density depends only in a piecewise …
We would like to take this opportunity to thank the discussants for their thoughtful comments and encouragements on our work [arXiv:0808.1012]. The discussants raised a number of issues from theoretical as well as computational perspectives. Our rejoinder will try to provide some insights into these issues and address specific questions asked by the discussants.
This paper is devoted to the off-line multiple change-point detection in a semiparametric framework. The time series is supposed to belong to a large class of models including AR($\infty$), ARCH($\infty$), TARCH($\infty$),... models where the coefficients change at each instant of breaks. The different unknown parameters (number of changes, change dates and parameters of successive models) are estimated using a penalized contrast built on conditional quasi-likelihood. Under Lipshitzian conditions on the model, the consistency of the estimator is proved when the moment order $r$ of the process …
We consider the problem of estimation of a shift parameter of an unknown symmetric function in Gaussian white noise. We introduce a notion of semiparametric second-order efficiency and propose estimators that are semiparametrically efficient and second-order efficient in our model. These estimators are of a penalized maximum likelihood type with an appropriately chosen penalty. We argue that second-order efficiency is crucial in semiparametric problems since only the second-order terms in asymptotic expansion for the risk account for the behavior of the ``nonparametric component'' of a semipar…
We address the issue of recovering the structure of large sparse directed acyclic graphs from noisy observations of the system. We propose a novel procedure based on a specific formulation of the l1-norm regularized maximum likelihood, which decomposes the graph estimation into two optimization sub-problems: topological structure and node order learning. We provide oracle inequalities for the graph estimator, as well as an algorithm to solve the induced optimization problem, in the form of a convex program embedded in a genetic algorithm. We apply our method to various data sets (including dat…
We describe here a framework for a certain class of multiscale likelihood factorizations wherein, in analogy to a wavelet decomposition of an L^2 function, a given likelihood function has an alternative representation as a product of conditional densities reflecting information in both the data and the parameter vector localized in position and scale. The framework is developed as a set of sufficient conditions for the existence of such factorizations, formulated in analogy to those underlying a standard multiresolution analysis for wavelets, and hence can be viewed as a multiresolution analys…
This paper formulates a penalized empirical likelihood (PEL) method for inference on the population mean when the dimension of the observations may grow faster than the sample size. Asymptotic distributions of the PEL ratio statistic is derived under different component-wise dependence structures of the observations, namely, (i) non-Ergodic, (ii) long-range dependence and (iii) short-range dependence. It follows that the limit distribution of the proposed PEL ratio statistic can vary widely depending on the correlation structure, and it is typically different from the usual chi-squared limit o…
We find upper bounds for the probability of underestimation and overestimation errors in penalized likelihood context tree estimation. The bounds are explicit and applies to processes of not necessarily finite memory. We allow for general penalizing terms and we give conditions over the maximal depth of the estimated trees in order to get strongly consistent estimates. This generalizes previous results obtained in the case of estimation of the order of a Markov chain.
We consider partly linear transformation models applied to current status data. The unknown quantities are the transformation function, a linear regression parameter and a nonparametric regression effect. It is shown that the penalized MLE for the regression parameter is asymptotically normal and efficient and converges at the parametric rate, although the penalized MLE for the transformation function and nonparametric regression effect are only $n^{1/3}$ consistent. Inference for the regression parameter based on a block jackknife is investigated. We also study computational issues and demons…
In this study, we consider unsupervised clustering of categorical vectors that can be of different size using mixture. We use likelihood maximization to estimate the parameters of the underlying mixture model and a penalization technique to select the number of mixture components. Regardless of the true distribution that generated the data, we show that an explicit penalty, known up to a multiplicative constant, leads to a non-asymptotic oracle inequality with the Kullback-Leibler divergence on the two sides of the inequality. This theoretical result is illustrated by a document clustering app…
The paper deals with generalized functional regression. The aim is to estimate the influence of covariates on observations, drawn from an exponential distribution. The link considered has a semiparametric expression: if we are interested in a functional influence of some covariates, we authorize others to be modeled linearly. We thus consider a generalized partially linear regression model with unknown regression coefficients and an unknown nonparametric function. We present a maximum penalized likelihood procedure to estimate the components of the model introducing penalty based wavelet estim…
We consider the problem of regularized maximum likelihood estimation for the structure and parameters of a high-dimensional, sparse directed acyclic graphical (DAG) model with Gaussian distribution, or equivalently, of a Gaussian structural equation model. We show that the $\ell_0$-penalized maximum likelihood estimator of a DAG has about the same number of edges as the minimal-edge I-MAP (a DAG with minimal number of edges representing the distribution), and that it converges in Frobenius norm. We allow the number of nodes p to be much larger than sample size n but assume a sparsity condition…
The purpose of this article is to develop a general parametric estimation theory that allows the derivation of the limit distribution of estimators in non-regular models where the true parameter value may lie on the boundary of the parameter space or where even identifiability fails. For that, we propose a more general local approximation of the parameter space (at the true value) than previous studies. This estimation theory is comprehensive in that it can handle penalized estimation as well as quasi-maximum likelihood estimation under such non-regular models. Besides, our results can apply t…
This paper presents a general theoretical framework of penalized quasi-maximum likelihood (PQML) estimation in stationary multiple time series models when the number of parameters possibly diverges. We show the oracle property of the PQML estimator under high-level, but tractable, assumptions, comprising the first half of the paper. Utilizing these results, we propose in the latter half of the paper a method of sparse estimation in high-dimensional vector autoregressive (VAR) models. Finally, the usability of the sparse high-dimensional VAR model is confirmed with a simulation study and an emp…
The penalized profile sampler for semiparametric inference is an extension of the profile sampler method (Lee, Kosorok and Fine, 2005) obtained by profiling a penalized log-likelihood. The idea is to base inference on the posterior distribution obtained by multiplying a profiled penalized log-likelihood by a prior for the parametric component, where the profiling and penalization are applied to the nuisance parameter. Because the prior is not applied to the full likelihood, the method is not strictly Bayesian. A benefit of this approximately Bayesian method is that it circumvents the need to p…
We consider the problem of selecting covariates in spatial linear models with Gaussian process errors. Penalized maximum likelihood estimation (PMLE) that enables simultaneous variable selection and parameter estimation is developed and, for ease of computation, PMLE is approximated by one-step sparse estimation (OSE). To further improve computational efficiency, particularly with large sample sizes, we propose penalized maximum covariance-tapered likelihood estimation (PMLE$_{\mathrm{T}}$) and its one-step sparse estimation (OSE$_{\mathrm{T}}$). General forms of penalty functions with an emph…
Inference based on the penalized density ratio model is proposed and studied. The model under consideration is specified by assuming that the log--likelihood function of two unknown densities is of some parametric form. The model has been extended to cover multiple samples problems while its theoretical properties have been investigated using large sample theory. A main application of the density ratio model is testing whether two, or more, distributions are equal. We extend these results by arguing that the penalized maximum empirical likelihood estimator has less mean square error than that …
This paper discusses asymptotic theory for penalized spline estimators in generalized additive models. The purpose of this paper is to establish the asymptotic bias and variance as well as the asymptotic normality of the penalized spline estimators proposed by Marx and Eilers (1998). Furthermore, the asymptotics for the penalized quasi likelihood fit in mixed models are also discussed.
A generalized linear point process is specified in terms of an intensity that depends upon a linear predictor process through a fixed non-linear function. We present a framework where the linear predictor is parametrized by a Banach space and give results on Gateaux differentiability of the log-likelihood. Of particular interest is when the intensity is expressed in terms of a linear filter parametrized by a Sobolev space. Using that the Sobolev spaces are reproducing kernel Hilbert spaces we derive results on the representation of the penalized maximum likelihood estimator in a special case a…
In finite mixtures of location-scale distributions, if there is no constraint or penalty on the parameters, then the maximum likelihood estimator does not exist because the likelihood is unbounded. To avoid this problem, we consider a penalized likelihood, where the penalty is a function of the minimum of the ratios of the scale parameters and the sample size. It is shown that the penalized maximum likelihood estimator is strongly consistent. We also analyze the consistency of a penalized maximum likelihood estimator where the penalty is imposed on the scale parameters themselves.
In high-dimensional model selection problems, penalized simple least-square approaches have been extensively used. This paper addresses the question of both robustness and efficiency of penalized model selection methods, and proposes a data-driven weighted linear combination of convex loss functions, together with weighted $L_1$-penalty. It is completely data-adaptive and does not require prior knowledge of the error distribution. The weighted $L_1$-penalty is used both to ensure the convexity of the penalty term and to ameliorate the bias caused by the $L_1$-penalty. In the setting with dimen…
Multivariate normal mixtures provide a flexible model for high-dimensional data. They are widely used in statistical genetics, statistical finance, and other disciplines. Due to the unboundedness of the likelihood function, classical likelihood-based methods, which may have nice practical properties, are inconsistent. In this paper, we recommend a penalized likelihood method for estimating the mixing distribution. We show that the maximum penalized likelihood estimator is strongly consistent when the number of components has a known upper bound. We also explore a convenient EM-algorithm for co…
Confidence intervals based on penalized maximum likelihood estimators such as the LASSO, adaptive LASSO, and hard-thresholding are analyzed. In the known-variance case, the finite-sample coverage properties of such intervals are determined and it is shown that symmetric intervals are the shortest. The length of the shortest intervals based on the hard-thresholding estimator is larger than the length of the shortest interval based on the adaptive LASSO, which is larger than the length of the shortest interval based on the LASSO, which in turn is larger than the standard interval based on the ma…
Statistical methods with empirical likelihood (EL) are appealing and effective especially in conjunction with estimating equations through which useful data information can be adaptively and flexibly incorporated. It is also known in the literature that EL approaches encounter difficulties when dealing with problems having high-dimensional model parameters and estimating equations. To overcome the challenges, we begin our study with a careful investigation on high-dimensional EL from a new scope targeting at estimating a high-dimensional sparse model parameters. We show that the new scope prov…
Penalization of the likelihood by Jeffreys' invariant prior, or by a positive power thereof, is shown to produce finite-valued maximum penalized likelihood estimates in a broad class of binomial generalized linear models. The class of models includes logistic regression, where the Jeffreys-prior penalty is known additionally to reduce the asymptotic bias of the maximum likelihood estimator; and also models with other commonly used link functions such as probit and log-log. Shrinkage towards equiprobability across observations, relative to the maximum likelihood estimator, is established theore…
Directed acyclic graphs (DAGs) are commonly used to represent causal relationships among random variables in graphical models. Applications of these models arise in the study of physical, as well as biological systems, where directed edges between nodes represent the influence of components of the system on each other. The general problem of estimating DAGs from observed data is computationally NP-hard, Moreover two directed graphs may be observationally equivalent. When the nodes exhibit a natural ordering, the problem of estimating directed graphs reduces to the problem of estimating the str…
We study the distributions of the LASSO, SCAD, and thresholding estimators, in finite samples and in the large-sample limit. The asymptotic distributions are derived for both the case where the estimators are tuned to perform consistent model selection and for the case where the estimators are tuned to perform conservative model selection. Our findings complement those of Knight and Fu (2000) and Fan and Li (2001). We show that the distributions are typically highly nonnormal regardless of how the estimator is tuned, and that this property persists in large samples. The uniform convergence rat…
Dimension reduction and variable selection are performed routinely in case-control studies, but the literature on the theoretical aspects of the resulting estimates is scarce. We bring our contribution to this literature by studying estimators obtained via L1 penalized likelihood optimization. We show that the optimizers of the L1 penalized retrospective likelihood coincide with the optimizers of the L1 penalized prospective likelihood. This extends the results of Prentice and Pyke (1979), obtained for non-regularized likelihoods. We establish both the sup-norm consistency of the odds ratio, a…
This paper is concerned with asymptotic theory for penalized spline estimator in bivariate additive model. The focus of this paper is put upon the penalized spline estimator obtained by the backfitting algorithm. The convergence of the algorithm as well as the uniqueness of its solution are shown. The asymptotic bias and variance of penalized spline estimator are derived by an efficient use of the asymptotic results for the penalized spline estimator in marginal univariate model. Asymptotic normality of estimator is also developed, by which an approximate confidence interval can be obtained. S…
We deal with the estimation of the regime number in a linear Gaussian autoregressive process with a Markov regime (AR-MR). The problem of estimating the number of regimes in this type of series is that of determining the number of states in the hidden Markov chain controlling the process. We propose a method based on penalized maximum likelihood estimation and establish its strong consistency (almost sure) without assuming previous bounds on the number of states.
Common TF-IDF variants arise as key components in the test statistic of a penalized likelihood-ratio test for word burstiness
School of Mathematical and Computational Sciences, University of Prince Edward Island（爱德华王子岛大学数学与计算科学学院）；Canadian Centre for Climate Change and Adaptation, University of Prince Edward Island（爱德华王子岛大学加拿大气候变化与适应中心）；Faculty of Sustainable Design Engineering, University of Prince Edward Island（爱德华王子岛大学可持续设计工程学院）
High dimensional statistical problems arise from diverse fields of scientific research and technological development. Variable selection plays a pivotal role in contemporary statistical learning and scientific discoveries. The traditional idea of best subset selection methods, which can be regarded as a specific form of penalized likelihood, is computationally too expensive for many modern statistical applications. Other forms of penalized likelihood methods have been successfully developed over the last decade to cope with high dimensionality. They have been widely applied for simultaneously …
We consider the segmentation problem of Poisson and negative binomial (i.e. overdispersed Poisson) rate distributions. In segmentation, an important issue remains the choice of the number of segments. To this end, we propose a penalized log-likelihood estimator where the penalty function is constructed in a non-asymptotic context following the works of L. Birgé and P. Massart. The resulting estimator is proved to satisfy an oracle inequality. The performances of our criterion is assessed using simulated and real datasets in the RNA-seq data analysis context.
Variable selection is fundamental to high-dimensional statistical modeling. Many variable selection techniques may be implemented by maximum penalized likelihood using various penalty functions. Optimizing the penalized likelihood function is often challenging because it may be nondifferentiable and/or nonconcave. This article proposes a new class of algorithms for finding a maximizer of the penalized likelihood for a broad class of penalty functions. These algorithms operate by perturbing the penalty function slightly to render it differentiable, then optimizing this differentiable function u…
We derive asymptotic properties of penalized estimators for singular models for which identifiability may break and the true parameter values can lie on the boundary of the parameter space. Selection consistency of the estimators is also validated. The problem that the true values lie on the boundary is dealt with by our previous results that are applicable to singular models, besides, penalized estimation and non-ergodic statistics. In order to overcome non-identifiability, we consider a suitable penalty such as the non-convex Bridge and the adaptive Lasso that stabilizes the asymptotic behav…
BIC criterion is widely used by the neural-network community for model selection tasks, although its convergence properties are not always theoretically established. In this paper we will focus on estimating the number of components in a mixture of multilayer perceptrons and proving the convergence of the BIC criterion in this frame. The penalized marginal-likelihood for mixture models and hidden Markov models introduced by Keribin (2000) and, respectively, Gassiat (2002) is extended to mixtures of multilayer perceptrons for which a penalized-likelihood criterion is proposed. We prove its conv…
We study the convergence properties, in Hellinger and related distances, of nonparametric density estimators based on measure transport. These estimators represent the measure of interest as the pushforward of a chosen reference distribution under a transport map, where the map is chosen via a maximum likelihood objective (equivalently, minimizing an empirical Kullback-Leibler loss) or a penalized version thereof. We establish concentration inequalities for a general class of penalized measure transport estimators, by combining techniques from M-estimation with analytical properties of the tra…
