We studied structures formed by a single $(AB)_k$ multiblock copolymer chain, in which interaction between A-type beads was purely repulsive, and B-type beads tended to aggregate. We studied how attraction between A-type beads and B-type beads affected the structure of the chain. We discovered formation of an equilibrium globular structure, which had unique heterogeneous checkerboard-like distribution of contact density. Unlike the structures usually formed by a single $(AB)_k$ multiblock copolymer chain, this structure had contact enrichment at the boundaries of A and B blocks. This structure was formed by a multiblock copolymer chain, in which B-type beads could form maximum two reversible bonds either with A-type or B-type beads, A-type beads could form maximum one reversible bond with a B-type bead, and interactions between A-type beads were purely repulsive. Multiblock copolymer chains with this type of intrachain interactions can model structure of chromatin in various organisms.
Microphase separation in random multiblock copolymers is studied with mean-field theory assuming that long blocks of a copolymer are strongly segregated, whereas short blocks are able to penetrate into "alien" domains and exchange between the domains and interfacial layer. A bidisperse copolymer with blocks of only two sizes (long and short) is considered as a model of multiblock copolymers with high polydispersity in the block size. Short blocks of the copolymer play an important role in microphase separation. First, their penetration into the "alien" domains leads to the formation of joint l…
We use a standard bead-spring model and molecular dynamics simulations to study the static properties of symmetric linear multiblock copolymer chains and their blocks under poor solvent conditions in a dilute solution from the regime close to theta conditions, where the chains adopt a coil-like formation, to the poorer solvent regime where the chains collapse obtaining a globular formation and phase separation between the blocks occurs. We choose interaction parameters as is done for a standard model, i.e., the Lennard-Jones fluid and we consider symmetric chains, i.e., the multiblock copolyme…
Molecular dynamics simulations are used to study the phase behavior of linear multiblock copolymers with two types of monomers, A and B, where the length of the polymer blocks $N_{A}$ and $N_{B}$ ($N_{A}=N_{B}=N$), the number of the blocks $n_{A}$ and $n_{B}$ ($n_{A}=n_{B}=n$), and the solvent quality varies. The fraction $f$ of A-type monomers is kept constant and equal to 0.5. Whereas at high enough temperatures these macromolecules form coil structures, where each block A or B forms rather individual clusters, at low enough temperatures A and B monomers from different blocks can join togeth…
We use molecular dynamics simulations to study the static properties of a single linear multiblock copolymer chain under poor solvent conditions varying the block length $N$, the number of blocks $n$, and the solvent quality by variation of the temperature $T$. We study the most symmetrical case, where the number of blocks of monomers of type A, $n_{A}$, equals that of monomers B, $n_{B}$ ($n_{A}=n_{B}=n/2$), the length of all blocks is the same irrespective of their type, and potential parameters are also chosen symmetrically, as for a standard Lennard-Jones fluid. Under poor solvent conditio…
The phase behaviour of amphiphilic multiblock copolymers with a large number of blocks in semidilute solutions is studied by lattice Monte Carlo simulations. The influence on the resulting structures of the concentration, the solvent quality and the ratio of hydrophobic to hydrophilic monomers in the chains has been assessed explicitely. Several distinct regimes are put in evidence. For poorly substituted (mainly hydrophilic) copolymers formation of micelles is observed, either isolated or connected by the hydrophilic moieties, depending on concentration and chain length. For more highly subst…
Molecular dynamics simulations are used to study the phase behavior of a single linear multiblock copolymer with blocks of A- and B-type monomers under poor solvent conditions, varying the block length $N$, number of blocks $n$, and the solvent quality (by variation of the temperature $T$). The fraction $f$ of A-type monomers is kept constant and equal to 0.5, and always the lengths of A and B blocks were equal ($N_{A}=N_{B}=N$), as well as the number of blocks ($n_{A}=n_{B}=n$). We identify the three following regimes where: (i) full microphase separation between blocks of different type occu…
The extension elasticity of rod-coil mutliblock copolymers is analyzed for two experimentally accessible situations. In the quenched case, when the architecture is fixed by the synthesis, the force law is distinguished by a sharp change in the slope. In the annealed case, where interconversion between rod and coil states is possible, the resulting force law is sigmoid with a pronounced plateau. This last case is realized, for example, when homopolypeptides capable of undergoing a helix-coil transition are extended from a coil state. Both scenarios are relevant to the analysis and design of exp…
We investigate the localization of a hydrophobic - polar (HP) - regular copolymer at a selective solvent-solvent interface with emphasis on the impact of block length $M$ on the copolymer behavior. The considerations are based on simple scaling arguments and use the mapping of the problem onto a homopolymer adsorption problem. The resulting scaling relations treat the gyration radius of the copolymer chain perpendicular and parallel to the interface in terms of chain length N and block size M, as well as the selectivity parameter χ. The scaling relations differ for the case of weak and strong …
Multiblock copolymer chains in implicit nonselective solvents are studied by Monte Carlo method which employs a parallel tempering algorithm. Chains consisting of 120 $A$ and 120 $B$ monomers, arranged in three distinct microarchitectures: $(10-10)_{12}$, $(6-6)_{20}$, and $(3-3)_{40}$, collapse to globular states upon cooling, as expected. By varying both the reduced temperature $T^*$ and compatibility between monomers $ω$, numerous intra-globular structures are obtained: diclusters (handshake, spiral, torus with a core, etc.), triclusters, and $n$-clusters with $n>3$ (lamellar and other), wh…
The self-consistent field theory is a popular and highly successful theoretical framework for studying equilibrium (co)polymer systems at the mesoscopic level. Dynamic density functionals allow one to use this framework for studying dynamical processes in the diffusive, non-inertial regime. The central quantity in these approaches is the mobility function, which describes the effect of chain connectivity on the nonlocal response of monomers to thermodynamic driving fields. In a recent study [Mantha et al, Macromolecules 53, 3409 (2020)], we have developed a method to systematically construct m…
Polymeric micelles are used in a variety of applications, with the micelle's shape often playing an important role. Consequently, a scheme to design micelles of arbitrary shape is desirable. In this paper, we consider micelles formed from a single, linear, multiblock copolymer, and we study how easily the micelle's shape can be controlled by altering the copolymer block lengths. Using a rational design scheme, we identify a few aspects of the multiblock composition that are expected to have a well-behaved, predictable effect on micelle shape. Starting from a reference micelle composition, itse…
An extensive study of single block copolymer knots containing two kinds of monomers $A$ and $B$ is presented. The knots are in a solution and their monomers are subjected to short range interactions that can be attractive or repulsive. In view of possible applications in medicine and the construction of intelligent materials, it is shown that several features of copolymer knots can be tuned by changing the monomer configuration. A very fast and abrupt swelling with increasing temperature is obtained in certain multiblock copolymers, while the size and the swelling behavior at high temperatures…
We present a lattice Monte Carlo simulation for a multiblock copolymer chain of length N=240 and microarchitecture $(10-10)_{12}$.The simulation was performed using the Monte Carlo method with the Metropolis algorithm. We measured average energy, heat capacity, the mean squared radius of gyration, and the histogram of cluster count distribution. Those quantities were investigated as a function of temperature and incompatibility between segments, quantified by parameter ω. We determined the temperature of the coil-globule transition and constructed the phase diagram exhibiting a variety of patc…
We perform off-lattice, canonical ensemble molecular dynamics simulations of the self-assembly of long segmented copolymers consisting of alternating, tunably attractive and hydrophobic {\em binder} domains, connected by hydrophilic {\em linker} chains whose length may be separately controlled. In such systems, the molecular design of the molecule directly determines the balance between energetic and entropic tendencies. We determine the structural phase diagram of this system, which shows collapsed states (dominated by the attractive linkers' energies), swollen states (dominated by the random…
A self-consistent field theory was developed in the grand-canonical ensemble formulation to study transitions in a helix-coil multiblock globule. Helical and coil parts are treated as stiff rods and self-avoiding walks of variable lengths correspondingly. The resulting field-theory takes, in addition to the conventional Zimm-Bragg (B.H. Zimm, I.K. Bragg, J. Chem. Phys. 31, 526 (1959)) parameters, also three-dimensional interaction terms into account. The appropriate differential equations which determine the self-consistent fields were solved numerically with finite element method. Three diffe…
A static light scattering (SLS) study of bovine serum albumin (BSA) mixtures with two anionic graft copolymers of poly (sodium acrylate-co-sodium 2-acrylamido-2-methyl-1-propanesulphonate)-graft-poly (N, N-dimethylacrylamide), with a high composition in poly (N, N-dimethylacrylamide) (PDMAM) side chains, revealed the formation of oppositely charged complexes, at pH lower than 4.9, the isoelectric point of BSA. The core-corona nanoparticles formed at pH = 3.00, were characterized. Their molecular weight and radius of gyration were determined by SLS, while their hydrodynamic radius was determine…
Amphiphilic block copolymer solutions form various micellar structures including micelles and vesicles. We applied the density functional theory for block copolymers which we have proposed to amphiphilic block copolymer systems. The 3 dimensional simulation for AB diblock copolymer solutions and AB diblock copolymer / A homopolymer blends has been done and it is shown that the spherical micelles, cylindrical micelles and spherical vesicles are formed. It is also shown that the phase diagram for AB diblock copolymer / A homopolymer blends qualitatively agrees with the phase diagram obtained by …
Physico-chemical study of polymer mixtures formed by a polycation and a zwitterionic copolymer in aqueous solution and upon adsorption onto negatively charged surfaces
The phase behavior of polydisperse ABA triblock copolymers is studied using dissipative particle dynamics simulations, focusing on the emergence and property of bicontinuous structures. Bicontinuous structures are characterized by two separate, intermeshed nanoscopic domains extending throughout the material. The connectivity of polymeric bicontinuous structures makes them highly desirable for many applications. For conventional monodisperse diblock and triblock copolymers, regular bicontinuous structures (i.e., gyroid and Fddd) can be formed over a narrow composition window of ~3%. We demonst…
The phase behavior of asymmetrically interacting ABC star triblock copolymer melts is investigated by the self-consistent field theory (SCFT). Motivated by the experimental systems, in this study, we focus on the systems in which the Flory-Huggins interaction parameters satisfy $χ_{AC}>χ_{BC}\approx χ_{AB}$. Using various initialization strategies, a large number of periodic structures have been obtained in our calculations. A fourth-order pseudospectral algorithm combined with Anderson mixing method is used to compute the free energy of candidate structures carefully. The stability has been d…
We have studied structure formation in a confined block copolymer melt by means of dynamic density functional theory (DDFT). The confinement is two-dimensional, and the confined geometry is that of a cylindrical nanopore. Although the results of this study are general, our coarse-grained molecular model is inspired by an experimental lamellae-forming PS-PBD diblock copolymer system (Shin et al, Science, 306, 76 (2004)), in which an exotic toroidal structure was observed upon confinement in alumina nanopores. Our computational study shows that a zoo of exotic structures can be formed, although …
We apply a recently developed unsupervised machine learning scheme for local atomic environments to characterize large-scale, disordered aggregates formed by sequence-defined macromolecules. This method provides new insight into the structure of these disordered, dilute aggregates, which has proven difficult to understand using collective variables manually derived from expert knowledge. In contrast to such conventional order parameters, we are able to classify the global aggregate structure directly using descriptions of the local environments. The resulting characterization provides a deeper…
The thermal properties of coarse grained knotted polymers containing two kinds of monomers $A$ and $B$ fluctuating in a solution are investigated on a simple cubic lattice using the Wang-Landau MC algorithm. These knots have a more complex phase diagram than knots formed by homopolymers, including the possible presence of metastable states. Two different setups are considered: i) charged block copolymers in a ion solution and ii) neutral copolymers with the $A$ monomers above and the $B$ monomers below the theta point. A precise interpretation of the peaks observed in the plots of the specific…
We examine the phase transition of polymer adsorption as well as the underlying kinetics of polymer binding from dilute solutions on a structureless solid surface. The emphasis is put on the properties of regular multiblock copolymers, characterized by block size M and total length N as well as on random copolymers with quenched composition p of sticky and neutral segments. The macromolecules are modeled as coarse-grained bead-spring chains subject to a short-ranged surface adhesive potential. Phase diagrams, showing the variation of the critical threshold for single chain adsorption in terms …
The structure of spherical micelles of the diblock poly(styrene-block-acrylic acid) [PS-b-PA] copolymer in water was investigated up to concentrations where the polyelectrolyte coronal layers have to shrink and/or interpenetrate in order to accommodate the micelles in the increasingly crowded volume. We obtained the partial structure factors pertaining to the core and corona density correlations with small angle neutron scattering (SANS) and contrast matching in the water. The counterion structure factor was obtained with small angle X-ray scattering (SAXS) with a synchrotron radiation source.…
Molecular dynamics simulations have been employed to study the formation of a physical (thermoreversible) gel by amphiphilic A-B-A triblock copolymers in aqueous solution. In order to mimic the structure of hydrogel-forming polypeptides employed in experiments [W.A. Petka et al., Science 281, 389 (1998)], the endblocks of the polymer chains are modeled as hydrophobic rods representing the alpha-helical part of the polypeptides whereas the central B-block is hydrophilic and semi-flexible. We have determined structural properties, such as the hydrophobic cluster-size distribution function, the g…
We present a combined experimental and theoretical study on the role of copolymer architecture in the self-assembly of binary PEO-PCL mixtures in water-THF, and show that altering the chain geometry and composition of the copolymers can control the form of the self-assembled structures and lead to the formation of novel aggregates. First, using transmission electron microscopy and turbidity measurements, we study a mixture of sphere-forming and lamella-forming PEO-PCL copolymers, and show that increasing the molecular weight of the lamella-former at a constant ratio of its hydrophilic and hydr…
The industrial implementation of biofuel production from lignocellulosic biomass faces a number of economic obstacles. One of these is the cost of enzymes, typically used for cellulose hydrolysis. Nature provides some hints towards the efficiency of this process, exampled in natural enzyme complexes - cellulosomes, produced by some microorganisms. Therefore, many research groups target synthetic routes to mimic such cellulosomes with synthetic structures when many questions remain to be addressed: the optimal chemical structure and size of such synthetic scaffolds, their adsorption on the cell…
We report the results from a computational study of the self-assembly of amphiphilic di-tethered nanospheres using molecular simulation. As a function of the interaction strength and directionality of the tether-tether interactions, we predict the formation of four highly ordered phases not previously reported for nanoparticle systems. We find a double diamond structure comprised of a zincblende (binary diamond) arrangement of spherical micelles with a complementary diamond network of nanoparticles (ZnS/D); a phase of alternating spherical micelles in a NaCl structure with a complementary simp…
Herein, we describe new methods to produce colloidal particle chains of three stiffness regimes that can be observed on a single-particle level, that is, on the level of the monomers that make up the chain; the chains can even be observed in concentrated systems without using molecular tracers. These methods rely on the following: dipolar interactions induced by external electric fields in combination with long-range charge repulsion to assemble the particles into chains only, and a bonding step to ensure that the particles remain assembled as chains even after the external field is switched o…
In systems such as block copolymer mesophases or physical gels formed by associating copolymers, the dynamical properties are often controlled by the extraction/association of a sticking group. We propose a description of the extraction/association process of a single sticker. The statistical physics of these associated systems is usually dominated by stretched brush-like regions. A sticker has to overcome a potential barrier both to penetrate the stretched structure or to escape a favorable region built by associated stickers. Our main result is that these barriers are crossed by tension fluc…
Recent experiments on vesicles formed from block copolymers with liquid-crystalline side-chains reveal a rich variety of vesicle morphologies. The additional internal order ("structure") developed by these self-assembled block copolymer vesicles can lead to significantly deformed vesicles as a result of the delicate interplay between two-dimensional ordering and vesicle shape. The inevitable topological defects in structured vesicles of spherical topology also play an essential role in controlling the final vesicle morphology. Here we develop a minimal theoretical model for the morphology of t…
In this work we focus on the dynamics of macromolecular networks formed by end-linking identical polymer stars. The resulting macromolecular network can then be viewed as consisting of spacers which connect branching points (the cores of the stars). We succeed in analyzing exactly, in the framework of the generalized Gaussian model, the eigenvalue spectrum of such networks. As applications we focus on several topologies, such as regular networks and dendrimers; furthermore, we compare the results to those found for regular hyperbranched structures. In so doing, we also consider situations in w…
In recent experiments involving PNIPAM copolymers it has been observed that stable spherical nanoparticles are being formed by association of several chains in poor aqueous solution instead of aggregation. This type of mesoscopic structures called mesoglobules has an extremely monodispersed size distribution. Previously we have studied theoretically formation of clusters consisting of several chains in dilute solutions of amphiphilic heteropolymers. We have seen that the mesoglobules often possess an essentially micellar structure. In the current work we argue that formation of mesoglobules is…
