The amount of scientific papers published every day is daunting and constantly increasing. Keeping up with literature represents a challenge. If one wants to start exploring new topics it is hard to have a big picture without reading lots of articles. Furthermore, as one reads through literature, making mental connections is crucial to ask new questions which might lead to discoveries. In this work, I present a web tool which uses a Text Mining strategy to transform large collections of unstructured biomedical articles into structured data. Generated results give a quick overview on complex topics which can possibly suggest not explicitly reported information. In particular, I show two Data Science analyses. First, I present a literature based rare diseases network build using this tool in the hope that it will help clarify some aspects of these less popular pathologies. Secondly, I show how a literature based analysis conducted with PubSqueezer results allows to describe known facts about SARS-CoV-2. In one sentence, data generated with PubSqueezer make it easy to use scientific literate in any computational analysis such as machine learning, natural language processing etc.
Availability: http://www.pubsqueezer.com
With the advancement of technology and reduced storage costs, individuals and organizations are tending towards the usage of electronic media for storing textual information and documents. It is time consuming for readers to retrieve relevant information from unstructured document collection. It is easier and less time consuming to find documents from a large collection when the collection is ordered or classified by group or category. The problem of finding best such grouping is still there. This paper discusses the implementation of k-Means clustering algorithm for clustering unstructured te…
Aalto University School of Science（阿尔托大学理学院）；University of Jyväskylä（于韦斯屈莱大学）；Cyberwatch Finland Oy（芬兰Cyberwatch公司）；The Alan Turing Institute（艾伦·图灵研究所）
Information on cyber-related crimes, incidents, and conflicts is abundantly available in numerous open online sources. However, processing the large volumes and streams of data is a challenging task for the analysts and experts, and entails the need for newer methods and techniques. In this article we present and implement a novel knowledge graph and knowledge mining framework for extracting the relevant information from free-form text about incidents in the cyberdomain. The framework includes a machine learning based pipeline for generating graphs of organizations, countries, industries, prod…
North Carolina State University（北卡罗来纳州立大学）；University of North Carolina at Chapel Hill（北卡罗来纳大学教堂山分校）
Objective: We aim to learn potential novel cures for diseases from unstructured text sources. More specifically, we seek to extract drug-disease pairs of potential cures to diseases by a simple reasoning over the structure of spoken text. Materials and Methods: We use Google Cloud to transcribe podcast episodes of an NPR radio show. We then build a pipeline for systematically pre-processing the text to ensure quality input to the core classification model, which feeds to a series of post-processing steps for obtaining filtered results. Our classification model itself uses a language model pre-…
The amount of text that is generated every day is increasing dramatically. This tremendous volume of mostly unstructured text cannot be simply processed and perceived by computers. Therefore, efficient and effective techniques and algorithms are required to discover useful patterns. Text mining is the task of extracting meaningful information from text, which has gained significant attentions in recent years. In this paper, we describe several of the most fundamental text mining tasks and techniques including text pre-processing, classification and clustering. Additionally, we briefly explain …
Johannes Gutenberg University Mainz（约翰内斯·古腾堡大学美因茨分校）；Technical University of Darmstadt（达姆施塔特工业大学）
Decision-making usually takes five steps: identifying the problem, collecting data, extracting evidence, identifying pro and con arguments, and making decisions. Focusing on extracting evidence, this paper presents a hybrid model that combines latent Dirichlet allocation and word embeddings to obtain external knowledge from structured and unstructured data. We study the task of sentence-level argument mining, as arguments mostly require some degree of world knowledge to be identified and understood. Given a topic and a sentence, the goal is to classify whether a sentence represents an argument…
Nowadays, the Web has become one of the most widespread platforms for information change and retrieval. As it becomes easier to publish documents, as the number of users, and thus publishers, increases and as the number of documents grows, searching for information is turning into a cumbersome and time-consuming operation. Due to heterogeneity and unstructured nature of the data available on the WWW, Web mining uses various data mining techniques to discover useful knowledge from Web hyperlinks, page content and usage log. The main uses of web content mining are to gather, categorize, organize…
Data mining project managers can benefit from using standard data mining process models. The benefits of using standard process models for data mining, such as the de facto and the most popular, Cross-Industry-Standard-Process model for Data Mining (CRISP-DM) are reduced cost and time. Also, standard models facilitate knowledge transfer, reuse of best practices, and minimize knowledge requirements. On the other hand, to unlock the potential of ever-growing textual data such as publications, patents, social media data, and documents of various forms, digital innovation is increasingly needed. F…
University Leipzig（莱比锡大学）；GESIS -- Leibniz Institute for the Social Sciences（GESIS——莱布尼茨社会科学研究所）；Graz University of Technology（格拉茨工业大学）；RWTH Aachen University（亚琛工业大学）
The iLCM project pursues the development of an integrated research environment for the analysis of structured and unstructured data in a "Software as a Service" architecture (SaaS). The research environment addresses requirements for the quantitative evaluation of large amounts of qualitative data with text mining methods as well as requirements for the reproducibility of data-driven research designs in the social sciences. For this, the iLCM research environment comprises two central components. First, the Leipzig Corpus Miner (LCM), a decentralized SaaS application for the analysis of large …
University of Arkansas（阿肯色大学）；Google LLC.（谷歌有限责任公司）
Deep language models learning a hierarchical representation proved to be a powerful tool for natural language processing, text mining and information retrieval. However, representations that perform well for retrieval must capture semantic meaning at different levels of abstraction or context-scopes. In this paper, we propose a new method to generate multi-resolution word embeddings that represent documents at multiple resolutions in terms of context-scopes. In order to investigate its performance,we use the Stanford Question Answering Dataset (SQuAD) and the Question Answering by Search And R…
An increase in the use of smartphones has laid to the use of the internet and social media platforms. The most commonly used social media platforms are Twitter, Facebook, WhatsApp and Instagram. People are sharing their personal experiences, reviews, feedbacks on the web. The information which is available on the web is unstructured and enormous. Hence, there is a huge scope of research on understanding the sentiment of the data available on the web. Sentiment Analysis (SA) can be carried out on the reviews, feedbacks, discussions available on the web. There has been extensive research carried…
The selection of West Java governor is one event that seizes the attention of the public is no exception to social media users. Public opinion on a prospective regional leader can help predict electability and tendency of voters. Data that can be used by the opinion mining process can be obtained from Twitter. Because the data is very varied form and very unstructured, it must be managed and uninformed using data pre-processing techniques into semi-structured data. This semi-structured information is followed by a classification stage to categorize the opinion into negative or positive opinion…
K.U.Leuven（鲁汶大学）；Vlerick Leuven Gent Management School（弗拉瑞克-鲁汶-根特管理学院）；Amsterdam-Amstelland Police（阿姆斯特丹-阿姆斯特尔兰警察局）；Universiteit van Amsterdam Business School（阿姆斯特丹大学商学院）；National Research University Higher School of Economics（国家研究型高等经济大学）
Concept Relation Discovery and Innovation Enabling Technology (CORDIET), is a toolbox for gaining new knowledge from unstructured text data. At the core of CORDIET is the C-K theory which captures the essential elements of innovation. The tool uses Formal Concept Analysis (FCA), Emergent Self Organizing Maps (ESOM) and Hidden Markov Models (HMM) as main artifacts in the analysis process. The user can define temporal, text mining and compound attributes. The text mining attributes are used to analyze the unstructured text in documents, the temporal attributes use these document's timestamps for…
University of Minnesota（明尼苏达大学）；Overture Services, Inc.（Overture服务公司）；NEC Laboratories America（NEC美国实验室）
We exploit the redundancy and volume of information on the web to build a computerized player for the ABC TV game show 'Who Wants To Be A Millionaire?' The player consists of a question-answering module and a decision-making module. The question-answering module utilizes question transformation techniques, natural language parsing, multiple information retrieval algorithms, and multiple search engines; results are combined in the spirit of ensemble learning using an adaptive weighting scheme. Empirically, the system correctly answers about 75% of questions from the Millionaire CD-ROM, 3rd edit…
National University of Moquegua（莫克瓜国立大学）；University of São Paulo（圣保罗大学）
During the last years, the development in diverse areas related to computer science and internet, allowed to generate new alternatives for decision making in the selection of personnel for state and private companies. In order to optimize this selection process, the recommendation systems are the most suitable for working with explicit information related to the likes and dislikes of employers or end users, since this information allows to generate lists of recommendations based on collaboration or similarity of content. Therefore, this research takes as a basis these characteristics contained…
Over the past decade, there has been a steep rise in the data-driven analysis in major areas of medicine, such as clinical decision support system, survival analysis, patient similarity analysis, image analytics etc. Most of the data in the field are well-structured and available in numerical or categorical formats which can be used for experiments directly. But on the opposite end of the spectrum, there exists a wide expanse of data that is intractable for direct analysis owing to its unstructured nature which can be found in the form of discharge summaries, clinical notes, procedural notes w…
Information and communication technology has the capability to improve the process by which governments involve citizens in formulating public policy and public projects. Even though much of government regulations may now be in digital form (and often available online), due to their complexity and diversity, identifying the ones relevant to a particular context is a non-trivial task. Similarly, with the advent of a number of electronic online forums, social networking sites and blogs, the opportunity of gathering citizens' petitions and stakeholders' views on government policy and proposals ha…
RecordPoint（RecordPoint公司）；Queensland University of Technology（昆士兰科技大学）
In the mining industry, many reports are generated in the project management process. These past documents are a great resource of knowledge for future success. However, it would be a tedious and challenging task to retrieve the necessary information if the documents are unorganized and unstructured. Document clustering is a powerful approach to cope with the problem, and many methods have been introduced in past studies. Nonetheless, there is no silver bullet that can perform the best for any types of documents. Thus, exploratory studies are required to apply the clustering methods for new da…
The University of Sheffield（谢菲尔德大学）；The University of Sheffield International Faculty - CITY College（谢菲尔德大学国际学院——城市学院）；South East European Research Centre（东南欧研究中心）；University of Western Macedonia（西马其顿大学）
Argumentation mining is a rising subject in the computational linguistics domain focusing on extracting structured arguments from natural text, often from unstructured or noisy text. The initial approaches on modeling arguments was aiming to identify a flawless argument on specific fields (Law, Scientific Papers) serving specific needs (completeness, effectiveness). With the emerge of Web 2.0 and the explosion in the use of social media both the diffusion of the data and the argument structure have changed. In this survey article, we bridge the gap between theoretical approaches of argumentati…
University of Dubrovnik（杜布罗夫尼克大学）；University of Zagreb（萨格勒布大学）
Concept map is a graphical tool for representing knowledge. They have been used in many different areas, including education, knowledge management, business and intelligence. Constructing of concept maps manually can be a complex task; an unskilled person may encounter difficulties in determining and positioning concepts relevant to the problem area. An application that recommends concept candidates and their position in a concept map can significantly help the user in that situation. This paper gives an overview of different approaches to automatic and semi-automatic creation of concept maps …
With the advent of social media, our online feeds increasingly consist of short, informal, and unstructured text. This textual data can be analyzed for the purpose of improving user recommendations and detecting trends. Instagram is one of the largest social media platforms, containing both text and images. However, most of the prior research on text processing in social media is focused on analyzing Twitter data, and little attention has been paid to text mining of Instagram data. Moreover, many text mining methods rely on annotated training data, which in practice is both difficult and expen…
ANU & NICTA（澳大利亚国立大学与NICTA）；Monash University（莫纳什大学）
Aspect-based opinion mining is widely applied to review data to aggregate or summarize opinions of a product, and the current state-of-the-art is achieved with Latent Dirichlet Allocation (LDA)-based model. Although social media data like tweets are laden with opinions, their "dirty" nature (as natural language) has discouraged researchers from applying LDA-based opinion model for product review mining. Tweets are often informal, unstructured and lacking labeled data such as categories and ratings, making it challenging for product opinion mining. In this paper, we propose an LDA-based opinion…
Infectious disease outbreak has a significant impact on morbidity, mortality and can cause economic instability of many countries. As global trade is growing, goods and individuals are expected to travel across the border, an infected epidemic area carrier can pose a great danger to his hostile. If a disease outbreak is recognized promptly, then commercial products and travelers (traders/visitors) will be effectively vaccinated, and therefore the disease stopped. Early detection of outbreaks plays an important role here, and beware of the rapid implementation of control measures by citizens, p…
To date, there have been massive Semi-Structured Documents (SSDs) during the evolution of the Internet. These SSDs contain both unstructured features (e.g., plain text) and metadata (e.g., tags). Most previous works focused on modeling the unstructured text, and recently, some other methods have been proposed to model the unstructured text with specific tags. To build a general model for SSDs remains an important problem in terms of both model fitness and efficiency. We propose a novel method to model the SSDs by a so-called Tag-Weighted Topic Model (TWTM). TWTM is a framework that leverages b…
Data mining techniques can transform massive amounts of unstructured data into quantitative data that quickly reveal insights, trends, and patterns behind the original data. In this paper, a data mining model is applied to analyse the 2019 grant applications submitted to an Australian Government research funding agency to investigate whether grant schemes successfully identifies innovative project proposals, as intended. The grant applications are peer-reviewed research proposals that include specific ``innovation and creativity'' (IC) scores assigned by reviewers. In addition to predicting th…
The current state of adoption of well-structured electronic health records and integration of digital methods for storing medical patient data in structured formats can often considered as inferior compared to the use of traditional, unstructured text based patient data documentation. Data mining in the field of medical data analysis often needs to rely solely on processing of unstructured data to retrieve relevant data. In natural language processing (NLP), statistical models have been shown successful in various tasks like part-of-speech tagging, relation extraction (RE) and named entity rec…
As research interest surges, vector similarity search is applied in multiple fields, including data mining, computer vision, and information retrieval. {Given a set of objects (e.g., a set of images) and a query object, we can easily transform each object into a feature vector and apply the vector similarity search to retrieve the most similar objects. However, the original vector similarity search cannot well support \textit{hybrid queries}, where users not only input unstructured query constraint (i.e., the feature vector of query object) but also structured query constraint (i.e., the desir…
Root Cause Analysis (RCA) of any service-disrupting incident is one of the most critical as well as complex tasks in IT processes, especially for cloud industry leaders like Salesforce. Typically RCA investigation leverages data-sources like application error logs or service call traces. However a rich goldmine of root cause information is also hidden in the natural language documentation of the past incidents investigations by domain experts. This is generally termed as Problem Review Board (PRB) Data which constitute a core component of IT Incident Management. However, owing to the raw unstr…
In this position paper we present a new approach for discovering some special classes of assertional knowledge in the text by using large RDF repositories, resulting in the extraction of new non-taxonomic ontological relations. Also we use inductive reasoning beside our approach to make it outperform. Then, we prepare a case study by applying our approach on sample data and illustrate the soundness of our proposed approach. Moreover in our point of view current LOD cloud is not a suitable base for our proposal in all informational domains. Therefore we figure out some directions based on prior…
Distributed and Operating Systems, TU Berlin（柏林工业大学分布式与操作系统）；Huawei Munich Research Center, Huawei Technologies（华为技术有限公司慕尼黑研究中心）
The detection of anomalies is essential mining task for the security and reliability in computer systems. Logs are a common and major data source for anomaly detection methods in almost every computer system. They collect a range of significant events describing the runtime system status. Recent studies have focused predominantly on one-class deep learning methods on predefined non-learnable numerical log representations. The main limitation is that these models are not able to learn log representations describing the semantic differences between normal and anomaly logs, leading to a poor gene…
Recently, there are unprecedented data growth originating from different online platforms which contribute to big data in terms of volume, velocity, variety and veracity (4Vs). Given this nature of big data which is unstructured, performing analytics to extract meaningful information is currently a great challenge to big data analytics. Collecting and analyzing unstructured textual data allows decision makers to study the escalation of comments/posts on our social media platforms. Hence, there is need for automatic big data analysis to overcome the noise and the non-reliability of these unstru…
With the recent developments in digitisation, there are increasing number of documents available online. There are several information extraction tools that are available to extract information from digitised documents. However, identifying precise answers to a given query is often a challenging task especially if the data source where the relevant information resides is unknown. This situation becomes more complex when the data source is available in multiple formats such as PDF, table and html. In this paper, we propose a novel data extraction system to discover relevant and focused informat…
University of Texas at El Paso（得克萨斯大学埃尔帕索分校）；U. S. Army Corps of Engineers（美国陆军工程兵团）
More than 80% of today's data is unstructured in nature, and these unstructured datasets evolve over time. A large part of these datasets are text documents generated by media outlets, scholarly articles in digital libraries, findings from scientific and professional communities, and social media. Vector space models were developed to analyze text data using data mining and machine learning algorithms. While ample vector space models exist for text data, the evolutionary aspect of ever-changing text corpora is still missing in vector-based representations. The advent of word embeddings has ena…
Text Mining is a field that aims at extracting information from textual data. One of the challenges of such field of study comes from the pre-processing stage in which a vector (and structured) representation should be extracted from unstructured data. The common extraction creates large and sparse vectors representing the importance of each term to a document. As such, this usually leads to the curse-of-dimensionality that plagues most machine learning algorithms. To cope with this issue, in this paper we propose a new supervised feature extraction and reduction algorithm, named DCDistance, t…
College of Applied Studies, University of Bahrain（巴林大学应用研究学院）；School of Computing and Digital Technology, Birmingham City University（伯明翰城市大学计算与数字技术学院）
We propose a heuristically modified FP-Tree for ontology learning from text. Unlike previous research, for concept extraction, we use a regular expression parser approach widely adopted in compiler construction, i.e., deterministic finite automata (DFA). Thus, the concepts are extracted from unstructured documents. For ontology learning, we use a frequent pattern mining approach and employ a rule mining heuristic function to enhance its quality. This process does not rely on predefined lexico-syntactic patterns, thus, it is applicable for different subjects. We employ the ontology in a questio…
The majority of big data is unstructured and of this majority the largest chunk is text. While data mining techniques are well developed and standardized for structured, numerical data, the realm of unstructured data is still largely unexplored. The general focus lies on information extraction, which attempts to retrieve known information from text. The Holy Grail, however is knowledge discovery, where machines are expected to unearth entirely new facts and relations that were not previously known by any human expert. Indeed, understanding the meaning of text is often considered as one of the …
Context: Topic modeling finds human-readable structures in unstructured textual data. A widely used topic modeler is Latent Dirichlet allocation. When run on different datasets, LDA suffers from "order effects" i.e. different topics are generated if the order of training data is shuffled. Such order effects introduce a systematic error for any study. This error can relate to misleading results;specifically, inaccurate topic descriptions and a reduction in the efficacy of text mining classification results. Objective: To provide a method in which distributions generated by LDA are more stable a…
University of Southern California（南加州大学）；Caltech（加州理工学院）
Nowadays, people from all around the world use social media sites to share information. Twitter for example is a platform in which users send, read posts known as tweets and interact with different communities. Users share their daily lives, post their opinions on everything such as brands and places. Companies can benefit from this massive platform by collecting data related to opinions on them. The aim of this paper is to present a model that can perform sentiment analysis of real data collected from Twitter. Data in Twitter is highly unstructured which makes it difficult to analyze. However…
ETH Zurich（苏黎世联邦理工学院）；Mälardalen University（梅拉伦大学）
In recent years, huge amounts of unstructured textual data on the Internet are a big difficulty for AI algorithms to provide the best recommendations for users and their search queries. Since the Internet became widespread, a lot of research has been done in the field of Natural Language Processing (NLP) and machine learning. Almost every solution transforms documents into Vector Space Models (VSM) in order to apply AI algorithms over them. One such approach is based on Case-Based Reasoning (CBR). Therefore, the most important part of those systems is to compute the similarity between numerica…
