Do Noises Bother Human and Neural Networks In the Same Way? A Medical Image Analysis Perspective
National Tsing Hua University（国立清华大学）；Florida International University（佛罗里达国际大学）；Lehigh University（理海大学）；Guangdong Provincial People’s Hospital（广东省人民医院）；Guangdong Academy of Medical Science（广东省医学科学院）；University of Notre Dame（圣母大学）
Deep learning had already demonstrated its power in medical images, including denoising, classification, segmentation, etc. All these applications are proposed to automatically analyze medical images beforehand, which brings more information to radiologists during clinical assessment for accuracy improvement. Recently, many medical denoising methods had shown their significant artifact reduction result and noise removal both quantitatively and qualitatively. However, those existing methods are developed around human-vision, i.e., they are designed to minimize the noise effect that can be perceived by human eyes. In this paper, we introduce an application-guided denoising framework, which focuses on denoising for the following neural networks. In our experiments, we apply the proposed framework to different datasets, models, and use cases. Experimental results show that our proposed framework can achieve a better result than human-vision denoising network.
King Fahd University of Petroleum & Minerals（法赫德国王石油与矿业大学）；Tilburg University（蒂尔堡大学）；Banglalink Digital Communications Limited（Banglalink数字通信有限公司）
In this paper, we implemented both sequential and parallel version of fractal image compression algorithms using CUDA (Compute Unified Device Architecture) programming model for parallelizing the program in Graphics Processing Unit for medical images, as they are highly similar within the image itself. There are several improvement in the implementation of the algorithm as well. Fractal image compression is based on the self similarity of an image, meaning an image having similarity in majority of the regions. We take this opportunity to implement the compression algorithm and monitor the effe…
The Impact of ChatGPT and LLMs on Medical Imaging Stakeholders: Perspectives and Use Cases
Swiss Federal Institute of Technology Lausanne (EPFL)（洛桑联邦理工学院）；Technical University of Munich（慕尼黑工业大学）；University of Zurich（苏黎世大学）；Boston College（波士顿学院）
Chinese Academy of Sciences（中国科学院）；Johns Hopkins Medical Institutes（约翰斯·霍普金斯医学院）；Vanderbilt University（范德堡大学）；University of Science and Technology of China（中国科学技术大学）
Transformer, the latest technological advance of deep learning, has gained prevalence in natural language processing or computer vision. Since medical imaging bear some resemblance to computer vision, it is natural to inquire about the status quo of Transformers in medical imaging and ask the question: can the Transformer models transform medical imaging? In this paper, we attempt to make a response to the inquiry. After a brief introduction of the fundamentals of Transformers, especially in comparison with convolutional neural networks (CNNs), and highlighting key defining properties that cha…
The Boundaries of Fair AI in Medical Image Prognosis: A Causal Perspective
Department of Computer Science and Engineering, The Ohio State University（计算机科学与工程系，俄亥俄州立大学）；Department of Biomedical Informatics, The Ohio State University（生物医学信息学系，俄亥俄州立大学）；Department of Ophthalmology and Visual Sciences, The Ohio State University（眼科学与视觉科学系，俄亥俄州立大学）
The combination of tomographic imaging and deep learning, or machine learning in general, promises to empower not only image analysis but also image reconstruction. The latter aspect is considered in this perspective article with an emphasis on medical imaging to develop a new generation of image reconstruction theories and techniques. This direction might lead to intelligent utilization of domain knowledge from big data, innovative approaches for image reconstruction, and superior performance in clinical and preclinical applications. To realize the full impact of machine learning on medical i…
Transformer has achieved impressive successes for various computer vision tasks. However, most of existing studies require to pretrain the Transformer backbone on a large-scale labeled dataset (e.g., ImageNet) for achieving satisfactory performance, which is usually unavailable for medical images. Additionally, due to the gap between medical and natural images, the improvement generated by the ImageNet pretrained weights significantly degrades while transferring the weights to medical image processing tasks. In this paper, we propose Bootstrap Own Latent of Transformer (BOLT), a self-supervise…
National Heart and Lung Institute, Faculty of Medicine, Imperial College London（帝国理工学院医学院国家心肺研究所）；Department of Bioengineering, Faculty of Engineering, Imperial College London（帝国理工学院工程系生物工程系）；Royal Brompton Hospital（皇家布朗普顿医院）
Various structures in human physiology follow a treelike morphology, which often expresses complexity at very fine scales. Examples of such structures are intrathoracic airways, retinal blood vessels, and hepatic blood vessels. Large collections of 2D and 3D images have been made available by medical imaging modalities such as magnetic resonance imaging (MRI), computed tomography (CT), Optical coherence tomography (OCT) and ultrasound in which the spatial arrangement can be observed. Segmentation of these structures in medical imaging is of great importance since the analysis of the structure …
Institute of Computing Technology, Chinese Academy of Sciences（中国科学院计算技术研究所）；University of Arkansas（阿肯色大学）；University of Houston（休斯顿大学）；INRIA, Sophia Antipolis-Mediterranean Centre（法国国家信息与自动化研究所索菲亚·安蒂波利斯地中海中心）
Deep reinforcement learning (DRL) augments the reinforcement learning framework, which learns a sequence of actions that maximizes the expected reward, with the representative power of deep neural networks. Recent works have demonstrated the great potential of DRL in medicine and healthcare. This paper presents a literature review of DRL in medical imaging. We start with a comprehensive tutorial of DRL, including the latest model-free and model-based algorithms. We then cover existing DRL applications for medical imaging, which are roughly divided into three main categories: (I) parametric med…
Here Comes the Explanation: A Shapley Perspective on Multi-contrast Medical Image Segmentation
University of Washington（华盛顿大学）；Paul G. Allen School of Computer Science, University of Washington（华盛顿大学保罗·G·艾伦计算机科学学院）；Department of Neurological Surgery, University of Washington（华盛顿大学神经外科（注：此处按要求提取到学院/大学级别，实际原文该机构属于华盛顿大学，故提取为华盛顿大学））
Deep learning methods usually require a large amount of training data and lack interpretability. In this paper, we propose a novel knowledge distillation and model interpretation framework for medical image classification that jointly solves the above two issues. Specifically, to address the data-hungry issue, a small student model is learned with less data by distilling knowledge from a cumbersome pretrained teacher model. To interpret the teacher model and assist the learning of the student, an explainer module is introduced to highlight the regions of an input that are important for the pre…
CONNECT-AI Research Center, Yonsei University College of Medicine（延世大学医学院CONNECT-AI研究中心）；Gordon Center for Medical Imaging, Massachusetts General Hospital（麻省总医院戈登医学影像中心）；Harvard Medical School（哈佛医学院）
Medical imaging, including MRI, CT, and Ultrasound, plays a vital role in clinical decisions. Accurate segmentation is essential to measure the structure of interest from the image. However, manual segmentation is highly operator-dependent, which leads to high inter and intra-variability of quantitative measurements. In this paper, we explore the feasibility that Bayesian predictive distribution parameterized by deep neural networks can capture the clinicians' inter-intra variability. By exploring and analyzing recently emerged approximate inference schemes, we evaluate whether approximate Bay…
Automatic Prediction of Stroke Treatment Outcomes: Latest Advances and Perspectives
Adiyaman University（阿迪耶曼大学）；University of Bristol（布里斯托尔大学）；Southmead Hospital, North Bristol NHS Trust（北布里斯托尔国民保健信托基金会南米德医院）；School of Computer Science, University of Bristol（布里斯托尔大学计算机科学学院）
The Chinese University of Hong Kong（香港中文大学）；Imsight Medical Technology Co. Ltd.（视见医疗科技有限公司）；The Hong Kong Polytechnic University（香港理工大学）
Unsupervised domain adaptation has increasingly gained interest in medical image computing, aiming to tackle the performance degradation of deep neural networks when being deployed to unseen data with heterogeneous characteristics. In this work, we present a novel unsupervised domain adaptation framework, named as Synergistic Image and Feature Alignment (SIFA), to effectively adapt a segmentation network to an unlabeled target domain. Our proposed SIFA conducts synergistic alignment of domains from both image and feature perspectives. In particular, we simultaneously transform the appearance o…
Stanford University（斯坦福大学）；Columbia University（哥伦比亚大学）；Stanford Artificial Intelligence in Medicine Center（斯坦福医学人工智能中心）
Advances in computing power, deep learning architectures, and expert labelled datasets have spurred the development of medical imaging artificial intelligence systems that rival clinical experts in a variety of scenarios. The National Institutes of Health in 2018 identified key focus areas for the future of artificial intelligence in medical imaging, creating a foundational roadmap for research in image acquisition, algorithms, data standardization, and translatable clinical decision support systems. Among the key issues raised in the report: data availability, need for novel computing archite…
In this extended abstract, we will present and discuss opportunities and challenges brought about by a new deep learning method by AUC maximization (aka \underline{\bf D}eep \underline{\bf A}UC \underline{\bf M}aximization or {\bf DAM}) for medical image classification. Since AUC (aka area under ROC curve) is a standard performance measure for medical image classification, hence directly optimizing AUC could achieve a better performance for learning a deep neural network than minimizing a traditional loss function (e.g., cross-entropy loss). Recently, there emerges a trend of using deep AUC ma…
Tencent Javis Lab（腾讯杰维斯实验室）；Tencent AI Lab（腾讯AI实验室）
Convolutional Neural Networks (CNNs) have advanced existing medical systems for automatic disease diagnosis. However, a threat to these systems arises that adversarial attacks make CNNs vulnerable. Inaccurate diagnosis results make a negative influence on human healthcare. There is a need to investigate potential adversarial attacks to robustify deep medical diagnosis systems. On the other side, there are several modalities of medical images (e.g., CT, fundus, and endoscopic image) of which each type is significantly different from others. It is more challenging to generate adversarial perturb…
Technical University of Munich（慕尼黑工业大学）；Max Planck Institute for Informatics（马克斯·普朗克信息学研究所）
Several important tasks in medical image analysis can be stated in the form of an optimization problem whose feasible solutions are connected subgraphs. Examples include the reconstruction of neural or vascular structures under connectedness constraints. We discuss the minimum cost connected subgraph (MCCS) problem and its approximations from the perspective of medical applications. We propose a) objective-dependent constraints and b) novel constraint generation schemes to solve this optimization problem exactly by means of a branch-and-cut algorithm. These are shown to improve scalability and…
Arizona State University（亚利桑那州立大学）；Mayo Clinic（梅奥诊所）
Recently, self-supervised instance discrimination methods have achieved significant success in learning visual representations from unlabeled photographic images. However, given the marked differences between photographic and medical images, the efficacy of instance-based objectives, focusing on learning the most discriminative global features in the image (i.e., wheels in bicycle), remains unknown in medical imaging. Our preliminary analysis showed that high global similarity of medical images in terms of anatomy hampers instance discrimination methods for capturing a set of distinct features…
Combining information from multi-view images is crucial to improve the performance and robustness of automated methods for disease diagnosis. However, due to the non-alignment characteristics of multi-view images, building correlation and data fusion across views largely remain an open problem. In this study, we present TransFusion, a Transformer-based architecture to merge divergent multi-view imaging information using convolutional layers and powerful attention mechanisms. In particular, the Divergent Fusion Attention (DiFA) module is proposed for rich cross-view context modeling and semanti…
Random Token Fusion for Multi-View Medical Diagnosis
KTH Royal Institute of Technology（皇家理工学院）；Science for Life Laboratory（生命科学实验室）；Karolinska Institutet（卡罗林斯卡学院）；Karolinska University Hospital（卡罗林斯卡大学医院）
Towards a Transparent and Interpretable AI Model for Medical Image Classifications
School of Artificial Intelligence, Guilin University of Electronic Technology（桂林电子科技大学人工智能学院）；The Laboratory for Imagery, Vision and Artificial Intelligence, Ecole de Technologie Superieure（图像、视觉与人工智能实验室，超技术学院）；College of Medicine, Taibah University（塔伊巴大学医学院）；Prince Mohammed Bin Abdulaziz Hospital, Ministry of National Guard Health Affairs（穆罕默德·本·阿卜杜勒阿齐兹医院，国家守卫健康事务部）
CentraleSupelec（中央理工-高等电力学院）；INRIA（法国国家信息与自动化研究所）；Universite Paris-Saclay（巴黎萨克雷大学）；Imperial College London（帝国理工学院）；TheraPanacea
During the last decades, the research community of medical imaging has witnessed continuous advances in image registration methods, which pushed the limits of the state-of-the-art and enabled the development of novel medical procedures. A particular type of image registration problem, known as slice-to-volume registration, played a fundamental role in areas like image guided surgeries and volumetric image reconstruction. However, to date, and despite the extensive literature available on this topic, no survey has been written to discuss this challenging problem. This paper introduces the first…
Medical Image Analysis is currently experiencing a paradigm shift due to Deep Learning. This technology has recently attracted so much interest of the Medical Imaging community that it led to a specialized conference in `Medical Imaging with Deep Learning' in the year 2018. This article surveys the recent developments in this direction, and provides a critical review of the related major aspects. We organize the reviewed literature according to the underlying Pattern Recognition tasks, and further sub-categorize it following a taxonomy based on human anatomy. This article does not assume prior…
A comprehensive survey on deep active learning in medical image analysis
Fudan University（复旦大学）；School of Basic Medical Sciences, Fudan University（复旦大学基础医学院）；King Abdullah University of Science and Technology (KAUST)（阿卜杜拉国王科技大学）
Data Science Group, Faculty of Science Radboud University, Nijmegen, the Netherlands（拉德堡德大学理学院数据科学组）
Multi-view medical image analysis often depends on the combination of information from multiple views. However, differences in perspective or other forms of misalignment can make it difficult to combine views effectively, as registration is not always possible. Without registration, views can only be combined at a global feature level, by joining feature vectors after global pooling. We present a novel cross-view transformer method to transfer information between unregistered views at the level of spatial feature maps. We demonstrate this method on multi-view mammography and chest X-ray datase…
The University of Hong Kong（香港大学）；ShanghaiTech University（上海科技大学）；Deepwise AI Lab（深睿人工智能实验室）；Shenzhen Research Institute of Big Data, The Chinese University of Hong Kong (Shenzhen)（香港中文大学（深圳）深圳大数据研究院）
Preserving maximal information is one of principles of designing self-supervised learning methodologies. To reach this goal, contrastive learning adopts an implicit way which is contrasting image pairs. However, we believe it is not fully optimal to simply use the contrastive estimation for preservation. Moreover, it is necessary and complemental to introduce an explicit solution to preserve more information. From this perspective, we introduce Preservational Learning to reconstruct diverse image contexts in order to preserve more information in learned representations. Together with the contr…
University of Waterloo（滑铁卢大学）；Sunnybrook Health Sciences Centre（新宁健康科学中心）
Good results on image classification and retrieval using support vector machines (SVM) with local binary patterns (LBPs) as features have been extensively reported in the literature where an entire image is retrieved or classified. In contrast, in medical imaging, not all parts of the image may be equally significant or relevant to the image retrieval application at hand. For instance, in lung x-ray image, the lung region may contain a tumour, hence being highly significant whereas the surrounding area does not contain significant information from medical diagnosis perspective. In this paper, …
Exploiting learning algorithms under scarce data regimes is a limitation and a reality of the medical imaging field. In an attempt to mitigate the problem, we propose a data augmentation protocol based on generative adversarial networks. We condition the networks at a pixel-level (segmentation mask) and at a global-level information (acquisition environment or lesion type). Such conditioning provides immediate access to the image-label pairs while controlling global class specific appearance of the synthesized images. To stimulate synthesis of the features relevant for the segmentation task, a…
A New Perspective to Boost Performance Fairness for Medical Federated Learning
Australian National University（澳大利亚国立大学）；The Hong Kong University of Science and Technology (Guangzhou)（香港科技大学（广州））；Guangxi Medical University（广西医科大学）；Institute of High Performance Computing (IHPC), Agency for Science, Technology and Research (A*STAR)（新加坡科技研究局高性能计算研究所）；Mohamed bin Zayed University of Artificial Intelligence (MBZUAI)（穆罕默德·本·扎耶德人工智能大学）；The Hong Kong University of Science and Technology（香港科技大学）
Perspective+ Unet: Enhancing Segmentation with Bi-Path Fusion and Efficient Non-Local Attention for Superior Receptive Fields
Shenzhen International Graduate School, Tsinghua University（清华大学深圳国际研究生院）；College of Electronics and Information Engineering, Shenzhen University（深圳大学电子与信息工程学院）
Université de Rouen Normandie（鲁昂诺曼底大学）；INSA Rouen（鲁昂应用科学学院）
Multi-modality is widely used in medical imaging, because it can provide multiinformation about a target (tumor, organ or tissue). Segmentation using multimodality consists of fusing multi-information to improve the segmentation. Recently, deep learning-based approaches have presented the state-of-the-art performance in image classification, segmentation, object detection and tracking tasks. Due to their self-learning and generalization ability over large amounts of data, deep learning recently has also gained great interest in multi-modal medical image segmentation. In this paper, we give an …
School of Computer Sciences, Universiti Sains Malaysia（马来西亚理科大学计算机科学学院）；School of Network Communication, Zhejiang Yuexiu University（浙江越秀外国语学院网络传播学院）
Medical images often exhibit low and blurred contrast between lesions and surrounding tissues, with considerable variation in lesion edges and shapes even within the same disease, leading to significant challenges in segmentation. Therefore, precise segmentation of lesions has become an essential prerequisite for patient condition assessment and formulation of treatment plans. Significant achievements have been made in research related to the U-Net model in recent years. It improves segmentation performance and is extensively applied in the semantic segmentation of medical images to offer tech…
Visual Question Answering in Ophthalmology: A Progressive and Practical Perspective
School of Optometry, The Hong Kong Polytechnic University（香港理工大学视光学院）；Research Centre for SHARP Vision (RCSV), The Hong Kong Polytechnic University（香港理工大学SHARP视觉研究中心）；Centre for Eye and Vision Research (CEVR)（眼科及视觉科学研究中心）
