arXivDaily arXiv每日学术速递 周一至周五更新
arXiv 2008.00901eess.IVcs.CV
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Automated Segmentation of Brain Gray Matter Nuclei on Quantitative Susceptibility Mapping Using Deep Convolutional Neural Network

Tianjin First Central Hospital(天津市第一中心医院);Tianjin Medical Imaging Institute(天津医学影像研究所);Nankai University(南开大学);Wayne State University(韦恩州立大学);Tianjin Huanhu Hospital(天津市环湖医院);Dalian University of Technology(大连理工大学)

Chao Chai, Pengchong Qiao, Bin Zhao, Huiying Wang, Guohua Liu, Hong Wu, E Mark Haacke, Wen Shen, Chen Cao, Xinchen Ye, Zhiyang Liu, Shuang Xia

英文摘要:

Abnormal iron accumulation in the brain subcortical nuclei has been reported to be correlated to various neurodegenerative diseases, which can be measured through the magnetic susceptibility from the quantitative susceptibility mapping (QSM). To quantitively measure the magnetic susceptibility, the nuclei should be accurately segmented, which is a tedious task for clinicians. In this paper, we proposed a double-branch residual-structured U-Net (DB-ResUNet) based on 3D convolutional neural network (CNN) to automatically segment such brain gray matter nuclei. To better tradeoff between segmentation accuracy and the memory efficiency, the proposed DB-ResUNet fed image patches with high resolution and the patches with low resolution but larger field of view into the local and global branches, respectively. Experimental results revealed that by jointly using QSM and T$_\text{1}$ weighted imaging (T$_\text{1}$WI) as inputs, the proposed method was able to achieve better segmentation accuracy over its single-branch counterpart, as well as the conventional atlas-based method and the classical 3D-UNet structure. The susceptibility values and the volumes were also measured, which indicated that the measurements from the proposed DB-ResUNet are able to present high correlation with values from the manually annotated regions of interest.

机构、总结、中文摘要均由AI分析而来,可能存在错误,请以论文正文为准。

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