The paper develops a stochastic Agent-Based Model (ABM) mimicking the spread of infectious diseases in geographical domains. The model is designed to simulate the spatiotemporal spread of SARS-CoV2 disease, known as COVID-19. Our SARS-CoV2-based ABM framework (CoV-ABM) simulates the spread at any geographical scale, ranging from a village to a country and considers unique characteristics of SARS-CoV2 viruses such as its persistence in the environment. Therefore, unlike other simulators, CoV-ABM computes the density of active viruses inside each location space to get the virus transmission probability for each agent. It also uses the local census and health data to create health and risk factor profiles for each individual. The proposed model relies on a flexible timestamp scale to optimize the computational speed and the level of detail. In our framework each agent represents a person interacting with the surrounding space and other adjacent agents inside the same space. Moreover, families stochastic daily tasks are formulated to get tracked by the corresponding family members. The model also formulates the possibility of meetings for each subset of friendships and relatives. The main aim of the proposed framework is threefold: to illustrate the dynamics of SARS-CoV diseases, to identify places which have a higher probability to become infection hubs and to provide a decision-support system to design efficient interventions in order to fight against pandemics. The framework employs SEIHRD dynamics of viral diseases with different intervention scenarios. The paper simulates the spread of COVID-19 in the State of Delaware, United States, with near one million stochastic agents. The results achieved over a period of 15 weeks with a timestamp of 1 hour show which places become the hubs of infection. The paper also illustrates how hospitals get overwhelmed as the outbreak reaches its pick.
This paper presents a new simulator for dynamic modelling of interactions between flooding and people in crowded areas. The simulator is developed in FLAMEGPU (a Flexible Large scale Agent-based Modelling Environment for the GPU), which allows to model multiple agent interactions while benefitting from the speed-up of GPUs. Flooding variables including terrain data are represented by a hydrodynamic Agent-Based Model (ABM) that is based on a non-sequential implementation of a robust Finite Volume (FV) solver of the Shallow Water Equations (SWEs). People movements are represented by a pedestrian…
Studying the spatiotemporal differences in coronavirus disease (COVID-19) between social groups such as healthcare workers (HCWs) and patients can aid in formulating epidemic containment policies. Most previous studies of the spatiotemporal characteristics of COVID-19 were conducted in a single group and did not explore the differences between groups. To fill this research gap, this study assessed the spatiotemporal characteristics and differences among patients and HCWs infection in Wuhan, Hubei (excluding Wuhan), and China (excluding Hubei). The temporal difference was greater in Wuhan than …
Studying the spatiotemporal distribution of SARS-CoV-2 infections among healthcare workers (HCWs) can aid in protecting them from exposure. Existing studies related to HCW infections have emphasized infection rates and protective measures. However, the spatiotemporal patterns and related external environmental factors of HCW infections remain unclear. To fill this gap, an open-source dataset of HCW diagnoses was provided, and the spatiotemporal distributions of SARS-CoV-2 infections among HCWs in Wuhan, China were explored. A geographical detector technique was then used to investigate the imp…
We develop a method for analyzing spatial and spatiotemporal anomalies in geospatial data using topological data analysis (TDA). To do this, we use persistent homology (PH), which allows one to algorithmically detect geometric voids in a data set and quantify the persistence of such voids. We construct an efficient filtered simplicial complex (FSC) such that the voids in our FSC are in one-to-one correspondence with the anomalies. Our approach goes beyond simply identifying anomalies; it also encodes information about the relationships between anomalies. We use vineyards, which one can interpr…
Understanding influencing factors is essential for the surveillance and prevention of infectious diseases, and the factors are likely to vary spatially and temporally as the disease progresses. Taking daily cases and deaths data during the coronavirus disease 2019 (COVID-19) outbreak in the U.S. as a case study, we develop a mobility-augmented geographically and temporally weighted regression (M-GTWR) model to quantify the spatiotemporal impacts of social-demographic factors and human activities on the COVID-19 dynamics. Different from the base GTWR model, we incorporate a mobility-adjusted di…
Covid-19 has caused hundred of thousands of deaths and an economic damage amounting to trillions of dollars, creating a desire for the rapid development of vaccine. Once available, vaccine is gradually produced, evoking the question on how to distribute it best. While official vaccination guidelines largely focus on the question to whom vaccines should be provided first (e.g. to risk groups), here we propose a strategy for their distribution in time and space, which sequentially prioritizes regions with a high local infection growth rate. To demonstrate this strategy, we develop a simple stati…
The sudden outbreak of the Coronavirus disease (COVID-19) swept across the world in early 2020, triggering the lockdowns of several billion people across many countries, including China, Spain, India, the U.K., Italy, France, Germany, and most states of the U.S. The transmission of the virus accelerated rapidly with the most confirmed cases in the U.S., and New York City became an epicenter of the pandemic by the end of March. In response to this national and global emergency, the NSF Spatiotemporal Innovation Center brought together a taskforce of international researchers and assembled imple…
In order to analyze the impact of COVID-19 on people's lives, activities and the natural environment, this paper investigates the spatial and temporal characteristics of Night Time Light (NTL) radiance and Air Quality Index (AQI) before and during the pandemic in mainland China. Our results show that the monthly average NTL brightness is much lower during the quarantine period than before. This study categorizes NTL into three classes: residential area, transportation and public facilities and commercial centers, with NTL radiance ranges of 5-20, 20-40 and greater than 40 nW/(cm*cm*sr), respec…
Since the outbreak of COVID-19 in early March 2020, UK supermarkets have implemented different policies to reduce the virus transmission in stores to protect both customers and staff, such as restricting the maximum number of customers in a store, changes to the store layout, or enforcing a mandatory face covering policy. To quantitatively assess these mitigation methods, we formulate an agent-based model of customer movement in a supermarket (which we represent by a network) with a simple virus transmission model based on the amount of time a customer spends in close proximity to infectious c…
HKUST (University of Science & Technology)（香港科技大学）；International Computer Science Institute（国际计算机科学研究所）；Ecole de Guerre Economique（经济战争学院）；University of Cambridge（剑桥大学）；Manifold Research；University College London（伦敦大学学院）；ELU AI Ltd（ELU AI有限公司）；Royal Free Hospital（皇家自由医院）；Population Research Institute, The Family Federation of Finland（芬兰家庭联合会人口研究所）
We present two models for the COVID-19 pandemic predicting the impact of universal face mask wearing upon the spread of the SARS-CoV-2 virus--one employing a stochastic dynamic network based compartmental SEIR (susceptible-exposed-infectious-recovered) approach, and the other employing individual ABM (agent-based modelling) Monte Carlo simulation--indicating (1) significant impact under (near) universal masking when at least 80% of a population is wearing masks, versus minimal impact when only 50% or less of the population is wearing masks, and (2) significant impact when universal masking is …
Potential Landscapes Reveal Spatiotemporal Structure in Urban Mobility: Hodge Decomposition and Principal Component Analysis of Tokyo Before and During COVID-19
