This paper describes REAP, a software-hardware approach that enables high performance sparse linear algebra computations on a cooperative CPU-FPGA platform. REAP carefully separates the task of organizing the matrix elements from the computation phase. It uses the CPU to provide a first-pass re-organization of the matrix elements, allowing the FPGA to focus on the computation. We introduce a new intermediate representation that allows the CPU to communicate the sparse data and the scheduling decisions to the FPGA. The computation is optimized on the FPGA for effective resource utilization with pipelining. REAP improves the performance of Sparse General Matrix Multiplication (SpGEMM) and Sparse Cholesky Factorization by 3.2X and 1.85X compared to widely used sparse libraries for them on the CPU, respectively.
As a promising solution to boost the performance of distance-related algorithms (e.g., K-means and KNN), FPGA-based acceleration attracts lots of attention, but also comes with numerous challenges. In this work, we propose AccD, a compiler-based framework for accelerating distance-related algorithms on CPU-FPGA platforms. Specifically, AccD provides a Domain-specific Language to unify distance-related algorithms effectively, and an optimizing compiler to reconcile the benefits from both the algorithmic optimization on the CPU and the hardware acceleration on the FPGA. The output of AccD is a h…
Monte Carlo Tree Search (MCTS) methods have achieved great success in many Artificial Intelligence (AI) benchmarks. The in-tree operations become a critical performance bottleneck in realizing parallel MCTS on CPUs. In this work, we develop a scalable CPU-FPGA system for Tree-Parallel MCTS. We propose a novel decomposition and mapping of MCTS data structure and computation onto CPU and FPGA to reduce communication and coordination. High scalability of our system is achieved by encapsulating in-tree operations in an SRAM-based FPGA accelerator. To lower the high data access latency and inter-wo…
Mini-batch inference of Graph Neural Networks (GNNs) is a key problem in many real-world applications. Recently, a GNN design principle of model depth-receptive field decoupling has been proposed to address the well-known issue of neighborhood explosion. Decoupled GNN models achieve higher accuracy than original models and demonstrate excellent scalability for mini-batch inference. We map Decoupled GNNs onto CPU-FPGA heterogeneous platforms to achieve low-latency mini-batch inference. On the FPGA platform, we design a novel GNN hardware accelerator with an adaptive datapath denoted Adaptive Co…
Unlike other accelerators, FPGAs are capable of supporting cache coherency, thereby turning them into a more powerful architectural option than just a peripheral accelerator. However, most existing deployments of FPGAs are either non-cache coherent or support only an asymmetric design where cache coherency is controlled from the CPU. Taking advantage of a recently released two socket CPU-FPGA architecture, in this paper we describe ECI, a flexible implementation of cache coherency on the FPGA capable of supporting both symmetric and asymmetric protocols. ECI is open and customizable, given app…
As the size of real-world graphs increases, training Graph Neural Networks (GNNs) has become time-consuming and requires acceleration. While previous works have demonstrated the potential of utilizing FPGA for accelerating GNN training, few works have been carried out to accelerate GNN training with multiple FPGAs due to the necessity of hardware expertise and substantial development effort. To this end, we propose HitGNN, a framework that enables users to effortlessly map GNN training workloads onto a CPU-Multi-FPGA platform for acceleration. In particular, HitGNN takes the user-defined synch…
Graph Neural Networks (GNNs) have shown great success in many applications such as recommendation systems, molecular property prediction, traffic prediction, etc. Recently, CPU-FPGA heterogeneous platforms have been used to accelerate many applications by exploiting customizable data path and abundant user-controllable on-chip memory resources of FPGAs. Yet, accelerating and deploying GNN training on such platforms requires not only expertise in hardware design but also substantial development efforts. We propose HP-GNN, a novel framework that generates high throughput GNN training implementat…
Recommendation systems, social network analysis, medical imaging, and data mining often involve processing sparse high-dimensional data. Such high-dimensional data are naturally represented as tensors, and they cannot be efficiently processed by conventional matrix or vector computations. Sparse Tucker decomposition is an important algorithm for compressing and analyzing these sparse high-dimensional data sets. When energy efficiency and data privacy are major concerns, hardware accelerators on resource-constraint platforms become crucial for the deployment of tensor algorithms. In this work, …
Quantitative finance is the use of mathematical models to analyse financial markets and securities. Typically requiring significant amounts of computation, an important question is the role that novel architectures can play in accelerating these models in the future on HPC machines. In this paper we explore the optimisation of an existing, open source, FPGA based Credit Default Swap (CDS) engine using High Level Synthesis (HLS). Developed by Xilinx, and part of their open source Vitis libraries, the implementation of this engine currently favours flexibility and ease of integration over perfor…
An Automatic Mixed Software Hardware Pipeline Builder for CPU-FPGA Platforms
Graduate School of Science and Technology, Keio University（庆应义塾大学理工学部）；Department of Electrical and Electronic Engineering, Imperial College London（帝国理工学院电气电子工程系）
The evolution of cloud applications into loosely-coupled microservices opens new opportunities for hardware accelerators to improve workload performance. Existing accelerator techniques for cloud sacrifice the consolidation benefits of microservices. This paper presents CloudiFi, a framework to deploy and compare accelerators as a cloud service. We evaluate our framework in the context of a financial workload and present early results indicating up to 485x gains in microservice response time.
In this paper, we introduce a software-defined framework that enables the parallel utilization of all the programmable processing resources available in heterogeneous system-on-chip (SoC) including FPGA-based hardware accelerators and programmable CPUs. Two platforms with different architectures are considered, and a single C/C++ source code is used in both of them for the CPU and FPGA resources. Instead of simply using the hardware accelerator to offload a task from the CPU, we propose a scheduler that dynamically distributes the tasks among all the resources to fully exploit all computing de…
Graph Convolutional Networks (GCNs) have emerged as the state-of-the-art deep learning model for representation learning on graphs. It is challenging to accelerate training of GCNs, due to (1) substantial and irregular data communication to propagate information within the graph, and (2) intensive computation to propagate information along the neural network layers. To address these challenges, we design a novel accelerator for training GCNs on CPU-FPGA heterogeneous systems, by incorporating multiple algorithm-architecture co-optimizations. We first analyze the computation and communication c…
Engineering is an important domain for supercomputing, with the Alya model being a popular code for undertaking such simulations. With ever increasing demand from users to model larger, more complex systems at reduced time to solution it is important to explore the role that novel hardware technologies, such as FPGAs, can play in accelerating these workloads on future exascale systems. In this paper we explore the porting of Alya's incompressible flow matrix assembly kernel, which accounts for a large proportion of the model runtime, onto FPGAs. After describing in detail successful strategies…
In recent years, utilization of heterogeneous hardware other than small core CPU such as GPU, FPGA or many core CPU is increasing. However, when using heterogeneous hardware, barriers of technical skills such as OpenMP, CUDA and OpenCL are high. Based on that, I have proposed environment-adaptive software that enables automatic conversion, configuration, and high performance operation of once written code, according to the hardware to be placed. However, including existing technologies, there has been no research to properly and automatically offload the mixed offloading destination environmen…
Sparse matrix-vector multiplication is often employed in many data-analytic workloads in which low latency and high throughput are more valuable than exact numerical convergence. FPGAs provide quick execution times while offering precise control over the accuracy of the results thanks to reduced-precision fixed-point arithmetic. In this work, we propose a novel streaming implementation of Coordinate Format (COO) sparse matrix-vector multiplication, and study its effectiveness when applied to the Personalized PageRank algorithm, a common building block of recommender systems in e-commerce websi…
Three-dimensional deconvolution is widely used in many computer vision applications. However, most previous works have only focused on accelerating 2D deconvolutional neural networks (DCNNs) on FPGAs, while the acceleration of 3D DCNNs has not been studied in depth as they have higher computational complexity and sparsity than 2D DCNNs. In this paper, we focus on the acceleration of both 2D and 3D DCNNs on FPGAs by proposing efficient schemes for mapping 2D and 3D DCNNs on a uniform architecture. By implementing our design on the Xilinx VC709 platform for four real-life 2D and 3D DCNNs, we can…
The computation of electron repulsion integrals (ERIs) over Gaussian-type orbitals (GTOs) is a challenging problem in quantum-mechanics-based atomistic simulations. In practical simulations, several trillions of ERIs may have to be computed for every time step. In this work, we investigate FPGAs as accelerators for the ERI computation. We use template parameters, here within the Intel oneAPI tool flow, to create customized designs for 256 different ERI quartet classes, based on their orbitals. To maximize data reuse, all intermediates are buffered in FPGA on-chip memory with customized layout.…
Numerical codes that require arbitrary precision floating point (APFP) numbers for their core computation are dominated by elementary arithmetic operations due to the super-linear complexity of multiplication in the number of mantissa bits. APFP computations on conventional software-based architectures are made exceedingly expensive by the lack of native hardware support, requiring elementary operations to be emulated using instructions operating on machine-word-sized blocks. In this work, we show how APFP multiplication on compile-time fixed-precision operands can be implemented as deep FPGA …
K-means is a popular but computation-intensive algorithm for unsupervised learning. To address this issue, we present KPynq, a work-efficient triangle-inequality based K-means on FPGA for handling large-size, high-dimension datasets. KPynq leverages an algorithm-level optimization to balance the performance and computation irregularity, and a hardware architecture design to fully exploit the pipeline and parallel processing capability of various FPGAs. In the experiment, KPynq consistently outperforms the CPU-based standard K-means in terms of its speedup (up to 4.2x) and significant energy-ef…
Hardware technological advances are struggling to match scientific ambition, and a key question is how we can use the transistors that we already have more effectively. This is especially true for HPC, where the tendency is often to throw computation at a problem whereas codes themselves are commonly bound, at-least to some extent, by other factors. By redesigning an algorithm and moving from a Von Neumann to dataflow style, then potentially there is more opportunity to address these bottlenecks on reconfigurable architectures, compared to more general-purpose architectures. In this paper we e…
Deep convolutional neural networks (CNNs) obtain outstanding results in tasks that require human-level understanding of data, like image or speech recognition. However, their computational load is significant, motivating the development of CNN-specialized accelerators. This work presents NEURAghe, a flexible and efficient hardware/software solution for the acceleration of CNNs on Zynq SoCs. NEURAghe leverages the synergistic usage of Zynq ARM cores and of a powerful and flexible Convolution-Specific Processor deployed on the reconfigurable logic. The Convolution-Specific Processor embeds both …
Personalized PageRank (PPR) is a graph algorithm that evaluates the importance of the surrounding nodes from a source node. Widely used in social network related applications such as recommender systems, PPR requires real-time responses (latency) for a better user experience. Existing works either focus on algorithmic optimization for improving precision while neglecting hardware implementations or focus on distributed global graph processing on large-scale systems for improving throughput rather than response time. Optimizing low-latency local PPR algorithm with a tight memory budget on edge …
We describe the design and FPGA implementation of a 3D torus network (TNW) to provide nearest-neighbor communications between commodity multi-core processors. The aim of this project is to build up tightly interconnected and scalable parallel systems for scientific computing. The design includes the VHDL code to implement on latest FPGA devices a network processor, which can be accessed by the CPU through a PCIe interface and which controls the external PHYs of the physical links. Moreover, a Linux driver and a library implementing custom communication APIs are provided. The TNW has been succe…
This paper presents a methodology for simultaneous heterogeneous computing, named ENEAC, where a quad core ARM Cortex-A53 CPU works in tandem with a preprogrammed on-board FPGA accelerator. A heterogeneous scheduler distributes the tasks optimally among all the resources and all compute units run asynchronously, which allows for improved performance for irregular workloads. ENEAC achieves up to 17\% performance improvement \ignore{and 14\% energy usage reduction,} when using all platform resources compared to just using the FPGA accelerators and up to 865\% performance increase \ignore{and up …
Convolutional neural network (CNN) dataflow inference accelerators implemented in Field Programmable Gate Arrays (FPGAs) have demonstrated increased energy efficiency and lower latency compared to CNN execution on CPUs or GPUs. However, the complex shapes of CNN parameter memories do not typically map well to FPGA on-chip memories (OCM), which results in poor OCM utilization and ultimately limits the size and types of CNNs which can be effectively accelerated on FPGAs. In this work, we present a design methodology that improves the mapping efficiency of CNN parameters to FPGA OCM. We frame the…
The use of Field Programmable Gate Arrays (FPGAs) to accelerate computational kernels has the potential to be of great benefit to scientific codes and the HPC community in general. With the recent developments in FPGA programming technology, the ability to port kernels is becoming far more accessible. However, to gain reasonable performance from this technology it is not enough to simple transfer a code onto the FPGA, instead the algorithm must be rethought and recast in a data-flow style to suit the target architecture. In this paper we describe the porting, via HLS, of one of the most comput…
It is now a noticeable trend in High Performance Computing that the systems are becoming more and more heterogeneous. Compute nodes with a host CPU are being equipped with accelerators, the latter being a GPU or FPGA cards or both. In many cases at the heart of scientific applications running on such systems are iterative linear solvers. In this work we present a software package which includes an FPGA implementation of the Conjugate Gradient algorithm using a particular problem of the Dirac-Wilson operator as encountered in numerical simulations of Quantum Chromodynamics. The software is writ…
Region proposal is critical for object detection while it usually poses a bottleneck in improving the computation efficiency on traditional control-flow architectures. We have observed region proposal tasks are potentially suitable for performing pipelined parallelism by exploiting dataflow driven acceleration. In this paper, a scalable pipelined dataflow accelerator is proposed for efficient region proposals on FPGA platform. The accelerator processes image data by a streaming manner with three sequential stages: resizing, kernel computing and sorting. First, Ping-Pong cache strategy is adopt…
