We created this EVIDENCEMINER system for automatic textual evidence mining in COVID-19 literature. EVIDENCEMINER is a web-based system that lets users query a natural language statement and automatically retrieves textual evidence from a background corpora for life sciences. It is constructed in a completely automated way without any human effort for training data annotation. EVIDENCEMINER is supported by novel data-driven methods for distantly supervised named entity recognition and open information extraction. The named entities and meta-patterns are pre-computed and indexed offline to support fast online evidence retrieval. The annotation results are also highlighted in the original document for better visualization. EVIDENCEMINER also includes analytic functionalities such as the most frequent entity and relation summarization.
The novel coronavirus (SARS-CoV-2) which causes COVID-19 is an ongoing pandemic. There are ongoing studies with up to hundreds of publications uploaded to databases daily. We are exploring the use-case of artificial intelligence and natural language processing in order to efficiently sort through these publications. We demonstrate that clinical trial information, preclinical studies, and a general topic model can be used as text mining data intelligence tools for scientists all over the world to use as a resource for their own research. To evaluate our method, several metrics are used to measu…
The Coronavirus pandemic created a global crisis that prompted immediate large-scale action, including economic shutdowns and mobility restrictions. These actions have had devastating effects on the economy, but some positive effects on the environment. As the world recovers from the pandemic, we ask the following question: What is the public attitude towards climate action during COVID-19 recovery and beyond? We answer this question by analyzing discussions on the Twitter social media platform. We find that most discussions support climate action and point out lessons learned during pandemic …
University of Delaware（特拉华大学）；Clemson University（克莱姆森大学）；Charter School of Wilmington（威尔明顿特许学校）；University of S. Carolina（南卡罗来纳大学）
In 2020, the White House released the, "Call to Action to the Tech Community on New Machine Readable COVID-19 Dataset," wherein artificial intelligence experts are asked to collect data and develop text mining techniques that can help the science community answer high-priority scientific questions related to COVID-19. The Allen Institute for AI and collaborators announced the availability of a rapidly growing open dataset of publications, the COVID-19 Open Research Dataset (CORD-19). As the pace of research accelerates, biomedical scientists struggle to stay current. To expedite their investig…
SRM University, Andhra Pradesh（SRM大学（安得拉邦））；University of Huddersfield（哈德斯菲尔德大学）
The novel coronavirus disease (COVID-19) began in Wuhan, China, in late 2019 and to date has infected over 148M people worldwide, resulting in 3.12M deaths. On March 10, 2020, the World Health Organisation (WHO) declared it as a global pandemic. Many academicians and researchers started to publish papers describing the latest discoveries on covid-19. The large influx of publications made it hard for other researchers to go through a large amount of data and find the appropriate one that helps their research. So, the proposed model attempts to extract relavent titles from the large corpus of re…
Data mining project managers can benefit from using standard data mining process models. The benefits of using standard process models for data mining, such as the de facto and the most popular, Cross-Industry-Standard-Process model for Data Mining (CRISP-DM) are reduced cost and time. Also, standard models facilitate knowledge transfer, reuse of best practices, and minimize knowledge requirements. On the other hand, to unlock the potential of ever-growing textual data such as publications, patents, social media data, and documents of various forms, digital innovation is increasingly needed. F…
The year 2020 has seen an unprecedented COVID-19 pandemic due to the outbreak of a novel strain of coronavirus in 180 countries. In a desperate effort to discover new drugs and vaccines for COVID-19, many scientists are working around the clock. Their valuable time and effort may benefit from computer-based mining of a large volume of health science literature that is a treasure trove of information. In this paper, we have developed a graph-based model using abstracts of 10,683 scientific articles to find key information on three topics: transmission, drug types, and genome research related to…
Diachronic text mining has frequently been applied to long-term linguistic surveys of word meaning and usage shifts over time. In this paper we apply short-term diachronic text mining to a rapidly growing corpus of scientific publications on COVID-19 captured in the CORD-19 dataset in order to identify co-occurrences and analyze the behavior of potential candidate treatments. We used a data set associated with a COVID-19 drug re-purposing study from Oak Ridge National Laboratory. This study identified existing candidate coronavirus treatments, including drugs and approved compounds, which had …
In recent years, several research articles have been published in the field of corona-virus caused diseases like severe acute respiratory syndrome (SARS), middle east respiratory syndrome (MERS) and COVID-19. In the presence of numerous research articles, extracting best-suited articles is time-consuming and manually impractical. The objective of this paper is to extract the activity and trends of corona-virus related research articles using machine learning approaches. The COVID-19 open research dataset (CORD-19) is used for experiments, whereas several target-tasks along with explanations ar…
School of Information and Communication Engineering, Hainan University（海南大学信息与通信工程学院）；School of Computer Science and Cyberspace Security, Hainan University（海南大学计算机与网络空间安全学院）；University of Chinese Academy of Sciences（中国科学院大学）；National University of Defense Technology（国防科技大学）；Department of Mathematics and Computer Science, Northeastern State University（东北州立大学数学与计算机科学系）
With the spread and development of new epidemics, it is of great reference value to identify the changing trends of epidemics in public emotions. We designed and implemented the COVID-19 public opinion monitoring system based on time series thermal new word mining. A new word structure discovery scheme based on the timing explosion of network topics and a Chinese sentiment analysis method for the COVID-19 public opinion environment is proposed. Establish a "Scrapy-Redis-Bloomfilter" distributed crawler framework to collect data. The system can judge the positive and negative emotions of the re…
Bangladesh University of Engineering and Technology（孟加拉国工程技术大学）；Hamad Bin Khalifa University（哈马德·本·哈利法大学）
We are presenting COVID-19Base, a knowledgebase highlighting the biomedical entities related to COVID-19 disease based on literature mining. To develop COVID-19Base, we mine the information from publicly available scientific literature and related public resources. We considered seven topic-specific dictionaries, including human genes, human miRNAs, human lncRNAs, diseases, Protein Databank, drugs, and drug side effects, are integrated to mine all scientific evidence related to COVID-19. We have employed an automated literature mining and labeling system through a novel approach to measure the…
Jožef Stefan International Postgraduate School（约瑟夫·斯特凡国际研究生院）；Jožef Stefan Institute（约瑟夫·斯特凡研究所）；University of Ljubljana（卢布尔雅那大学）；University of Nova Gorica（新戈里察大学）；Temida d.o.o（Temida有限责任公司）
The abundance of literature related to the widespread COVID-19 pandemic is beyond manual inspection of a single expert. Development of systems, capable of automatically processing tens of thousands of scientific publications with the aim to enrich existing empirical evidence with literature-based associations is challenging and relevant. We propose a system for contextualization of empirical expression data by approximating relations between entities, for which representations were learned from one of the largest COVID-19-related literature corpora. In order to exploit a larger scientific cont…
Since the emergence of the worldwide pandemic of COVID-19, relevant research has been published at a dazzling pace, which yields an abundant amount of big data in biomedical literature. Due to the high volum of relevant literature, it is practically impossible to follow up the research manually. Topic modeling is a well-known unsupervised learning that aims to reveal latent topics from text data. In this paper, we propose a novel analytical framework for estimating topic interactions and effective visualization to improve topics' relationships. We first estimate topic-word distributions using …
The outbreak of covid-19 started many months ago, the reported origin was in Wuhan Market, China. Fastly, this virus was propagated to other countries because the access to international travels is affordable and many countries have a distance of some flight hours, besides borders were a constant flow of people. By the other hand, Internet users have the habits of sharing content using Social Networks and issues, problems, thoughts about Covdid-19 were not an exception. Therefore, it is possible to analyze Social Network interaction from one city, country to understand the impact generated by …
Many brokers have adapted their operation to exploit the potential of the web. Despite the importance of the real estate classifieds, there has been little work in analyzing such data. In this paper we propose a two-stage regression model that exploits the textual data in real estate classifieds. We show how our model can be used to predict the price of a real estate classified. We also show how our model can be used to highlight keywords that affect the price positively or negatively. To assess our contributions, we analyze four real world data sets, which we gathered from three different pro…
Mental health disorders may cause severe consequences on all the countries' economies and health. For example, the impacts of the COVID-19 pandemic, such as isolation and travel ban, can make us feel depressed. Identifying early signs of mental health disorders is vital. For example, depression may increase an individual's risk of suicide. The state-of-the-art research in identifying mental disorder patterns from textual data, uses hand-labelled training sets, especially when a domain expert's knowledge is required to analyse various symptoms. This task could be time-consuming and expensive. T…
The Coronavirus pandemic has created complex challenges and adverse circumstances. This research discovers public sentiment amidst problematic socioeconomic consequences of the lockdown, and explores ensuing four potential sentiment associated scenarios. The severity and brutality of COVID-19 have led to the development of extreme feelings, and emotional and mental healthcare challenges. This research identifies emotional consequences - the presence of extreme fear, confusion and volatile sentiments, mixed along with trust and anticipation. It is necessary to gauge dominant public sentiment tr…
Along with the Coronavirus pandemic, another crisis has manifested itself in the form of mass fear and panic phenomena, fueled by incomplete and often inaccurate information. There is therefore a tremendous need to address and better understand COVID-19's informational crisis and gauge public sentiment, so that appropriate messaging and policy decisions can be implemented. In this research article, we identify public sentiment associated with the pandemic using Coronavirus specific Tweets and R statistical software, along with its sentiment analysis packages. We demonstrate insights into the p…
Indian Institute of Technology Kharagpur（印度理工学院卡哈拉格普尔分校）；University of Manchester（曼彻斯特大学）；University of Technology Sydney（悉尼科技大学）
Increasing number of COVID-19 research literatures cause new challenges in effective literature screening and COVID-19 domain knowledge aware Information Retrieval. To tackle the challenges, we demonstrate two tasks along withsolutions, COVID-19 literature retrieval, and question answering. COVID-19 literature retrieval task screens matching COVID-19 literature documents for textual user query, and COVID-19 question answering task predicts proper text fragments from text corpus as the answer of specific COVID-19 related questions. Based on transformer neural network, we provided solutions to i…
The COVID-19 pandemic has gained worldwide attention and allowed fake news, such as ``COVID-19 is the flu,'' to spread quickly and widely on social media. Combating this coronavirus infodemic demands effective methods to detect fake news. To this end, we propose a method to infer news credibility from hashtags involved in news dissemination on social media, motivated by the tight connection between hashtags and news credibility observed in our empirical analyses. We first introduce a new graph that captures all (direct and \textit{indirect}) relationships among hashtags. Then, a language-indep…
The COVID-19 pandemic has resulted in a tremendous need for access to the latest scientific information, primarily through the use of text mining and search tools. This has led to both corpora for biomedical articles related to COVID-19 (such as the CORD-19 corpus (Wang et al., 2020)) as well as search engines to query such data. While most research in search engines is performed in the academic field of information retrieval (IR), most academic search engines$\unicode{x2013}$though rigorously evaluated$\unicode{x2013}$are sparsely utilized, while major commercial web search engines (e.g., Goo…
School of Electrical and Computing Engineering, UNICAMP（坎皮纳斯州立大学电气与计算机工程学院）；NeuralMind Inteligência Artificial（NeuralMind 人工智能（公司））；David R. Cheriton School of Computer Science, University of Waterloo（滑铁卢大学大卫·R·谢里顿计算机科学学院）
What are the latent questions on some textual data? In this work, we investigate using question generation models for exploring a collection of documents. Our method, dubbed corpus2question, consists of applying a pre-trained question generation model over a corpus and aggregating the resulting questions by frequency and time. This technique is an alternative to methods such as topic modelling and word cloud for summarizing large amounts of textual data. Results show that applying corpus2question on a corpus of scientific articles related to COVID-19 yields relevant questions about the topic. …
With the rapid continuing spread of COVID-19, it is clearly important to be able to track the progress of the virus over time in order to be better prepared to anticipate its emergence and spread in new regions as well as declines in its presence in regions thereby leading to or justifying "reopening" decisions. There are many applications and web sites that monitor officially released numbers of cases which are likely to be the most accurate methods for tracking the progress of the virus; however, they will not necessarily paint a complete picture. To begin filling any gaps in official report…
University of Dubrovnik（杜布罗夫尼克大学）；University of Zagreb（萨格勒布大学）
Concept map is a graphical tool for representing knowledge. They have been used in many different areas, including education, knowledge management, business and intelligence. Constructing of concept maps manually can be a complex task; an unskilled person may encounter difficulties in determining and positioning concepts relevant to the problem area. An application that recommends concept candidates and their position in a concept map can significantly help the user in that situation. This paper gives an overview of different approaches to automatic and semi-automatic creation of concept maps …
Birkbeck, University of London（伦敦大学伯贝克学院）；University of Southampton（南安普顿大学）
Samtla (Search And Mining Tools with Linguistic Analysis) is a digital humanities system designed in collaboration with historians and linguists to assist them with their research work in quantifying the content of any textual corpora through approximate phrase search and document comparison. The retrieval engine uses a character-based n-gram language model rather than the conventional word-based one so as to achieve great flexibility in language agnostic query processing. The index is implemented as a space-optimised character-based suffix tree with an accompanying database of document conten…
State University of New York at Buffalo（纽约州立大学布法罗分校）
The Covid-19 pandemic has caused a spur in the medical research literature. With new research advances in understanding the virus, there is a need for robust text mining tools which can process, extract and present answers from the literature in a concise and consumable way. With a DialoGPT based multi-turn conversation generation module, and BM-25 \& neural embeddings based ensemble information retrieval module, in this paper we present a conversational system, which can retrieve and answer coronavirus-related queries from the rich medical literature, and present it in a conversational settin…
Following the global COVID-19 pandemic, the number of scientific papers studying the virus has grown massively, leading to increased interest in automated literate review. We present a clinical text mining system that improves on previous efforts in three ways. First, it can recognize over 100 different entity types including social determinants of health, anatomy, risk factors, and adverse events in addition to other commonly used clinical and biomedical entities. Second, the text processing pipeline includes assertion status detection, to distinguish between clinical facts that are present, …
Given a current news event, we tackle the problem of generating plausible predictions of future events it might cause. We present a new methodology for modeling and predicting such future news events using machine learning and data mining techniques. Our Pundit algorithm generalizes examples of causality pairs to infer a causality predictor. To obtain precisely labeled causality examples, we mine 150 years of news articles and apply semantic natural language modeling techniques to headlines containing certain predefined causality patterns. For generalization, the model uses a vast number of wo…
Sentiment analysis is attracting more and more attentions and has become a very hot research topic due to its potential applications in personalized recommendation, opinion mining, etc. Most of the existing methods are based on either textual or visual data and can not achieve satisfactory results, as it is very hard to extract sufficient information from only one single modality data. Inspired by the observation that there exists strong semantic correlation between visual and textual data in social medias, we propose an end-to-end deep fusion convolutional neural network to jointly learn text…
An increasing number of people are using online social networking services (SNSs), and a significant amount of information related to experiences in consumption is shared in this new media form. Text mining is an emerging technique for mining useful information from the web. We aim at discovering in particular tweets semantic patterns in consumers' discussions on social media. Specifically, the purposes of this study are twofold: 1) finding similarity and dissimilarity between two sets of textual documents that include consumers' sentiment polarities, two forms of positive vs. negative opinion…
Concept Drift Adaptation in Text Stream Mining Settings: A Systematic Review
Instituto Federal de Santa Catarina（圣卡塔琳娜联邦教育、科学和技术学院）；Pontifícia Universidade Católica do Paraná (PUCPR)（巴拉那天主教大学）；Instituto Federal de São Paulo（圣保罗联邦教育、科学和技术学院）；Universidade de Campinas（坎皮纳斯大学）；École de Technologie Supérieure, Université du Québec（魁北克大学高等技术学院）；Universidade Estadual de Ponta Grossa（庞塔格罗萨州立大学）
