We study the statistical and computational properties of a network Lasso method for local graph clustering. The clusters delivered by nLasso can be characterized elegantly via network flows between cluster boundary and seed nodes. While spectral clustering methods are guided by a minimization of the graph Laplacian quadratic form, nLasso minimizes the total variation of cluster indicator signals. As demonstrated theoretically and numerically, nLasso methods can handle very sparse clusters (chain-like) which are difficult for spectral clustering. We also verify that a primal-dual method for nonsmooth optimization allows to approximate nLasso solutions with optimal worst-case convergence rate.
Toulouse Mathematics Institute（图卢兹数学研究所）；University of Toulouse（图卢兹大学）；Metabolic and Cardiovascular Diseases Institute（代谢与心血管疾病研究所）；CNRS（法国国家科学研究中心）
Cluster structure detection is a fundamental task for the analysis of graphs, in order to understand and to visualize their functional characteristics. Among the different cluster structure detection methods, spectral clustering is currently one of the most widely used due to its speed and simplicity. Yet, there are few theoretical guarantee to recover the underlying partitions of the graph for general models. This paper therefore presents a variant of spectral clustering, called 1-spectral clustering, performed on a new random model closely related to stochastic block model. Its goal is to pr…
In this paper, we introduce Adaptive Cluster Lasso(ACL) method for variable selection in high dimensional sparse regression models with strongly correlated variables. To handle correlated variables, the concept of clustering or grouping variables and then pursuing model fitting is widely accepted. When the dimension is very high, finding an appropriate group structure is as difficult as the original problem. The ACL is a three-stage procedure where, at the first stage, we use the Lasso(or its adaptive or thresholded version) to do initial selection, then we also include those variables which a…
National University of Defense Technology（国防科技大学）；XIDIAN University（西安电子科技大学）；Zhejiang Normal University（浙江师范大学）；Dongguan University of Technology（东莞理工学院）
Recently, network lasso has drawn many attentions due to its remarkable performance on simultaneous clustering and optimization. However, it usually suffers from the imperfect data (noise, missing values etc), and yields sub-optimal solutions. The reason is that it finds the similar instances according to their features directly, which is usually impacted by the imperfect data, and thus returns sub-optimal results. In this paper, we propose triangle lasso to avoid its disadvantage. Triangle lasso finds the similar instances according to their neighbours. If two instances have many common neigh…
We consider the task of estimating a Gaussian graphical model in the high-dimensional setting. The graphical lasso, which involves maximizing the Gaussian log likelihood subject to an l1 penalty, is a well-studied approach for this task. We begin by introducing a surprising connection between the graphical lasso and hierarchical clustering: the graphical lasso in effect performs a two-step procedure, in which (1) single linkage hierarchical clustering is performed on the variables in order to identify connected components, and then (2) an l1-penalized log likelihood is maximized on the subset …
We apply network Lasso to semi-supervised regression problems involving network structured data. This approach lends quite naturally to highly scalable learning algorithms in the form of message passing over an empirical graph which represents the network structure of the data. By using a simple non-parametric regression model, which is motivated by a clustering hypothesis, we provide an analysis of the estimation error incurred by network Lasso. This analysis reveals conditions on the the network structure and the available training data which guarantee network Lasso to be accurate. Remarkabl…
In high dimensional regression, feature clustering by their effects on outcomes is often as important as feature selection. For that purpose, clustered Lasso and octagonal shrinkage and clustering algorithm for regression (OSCAR) are used to make feature groups automatically by pairwise $L_1$ norm and pairwise $L_\infty$ norm, respectively. This paper proposes efficient path algorithms for clustered Lasso and OSCAR to construct solution paths with respect to their regularization parameters. Despite too many terms in exhaustive pairwise regularization, their computational costs are reduced by u…
Many applications generate data with an intrinsic network structure such as time series data, image data or social network data. The network Lasso (nLasso) has been proposed recently as a method for joint clustering and optimization of machine learning models for networked data. The nLasso extends the Lasso from sparse linear models to clustered graph signals. This paper explores the duality of nLasso and network flow optimization. We show that, in a very precise sense, nLasso is equivalent to a minimum-cost flow problem on the data network structure. Our main technical result is a concise cha…
We apply the network Lasso to solve binary classification and clustering problems for network-structured data. To this end, we generalize ordinary logistic regression to non-Euclidean data with an intrinsic network structure. The resulting "logistic network Lasso" amounts to solving a non-smooth convex regularized empirical risk minimization. The risk is measured using the logistic loss incurred over a small set of labeled nodes. For the regularization, we propose to use the total variation of the classifier requiring it to conform to the underlying network structure. A scalable implementation…
In this work, we consider to improve the model estimation efficiency by aggregating the neighbors' information as well as identify the subgroup membership for each node in the network. A tree-based $l_1$ penalty is proposed to save the computation and communication cost. We design a decentralized generalized alternating direction method of multiplier algorithm for solving the objective function in parallel. The theoretical properties are derived to guarantee both the model consistency and the algorithm convergence. Thorough numerical experiments are also conducted to back up our theory, which …
We propose the Lasso Weighted $k$-means ($LW$-$k$-means) algorithm as a simple yet efficient sparse clustering procedure for high-dimensional data where the number of features ($p$) can be much larger compared to the number of observations ($n$). In the $LW$-$k$-means algorithm, we introduce a lasso-based penalty term, directly on the feature weights to incorporate feature selection in the framework of sparse clustering. $LW$-$k$-means does not make any distributional assumption of the given dataset and thus, induces a non-parametric method for feature selection. We also analytically investiga…
MD Anderson Cancer Center（MD安德森癌症中心）；University of Pittsburgh（匹兹堡大学）；University of Maryland（马里兰大学）
Clustering with variable selection is a challenging yet critical task for modern small-n-large-p data. Existing methods based on sparse Gaussian mixture models or sparse K-means provide solutions to continuous data. With the prevalence of RNA-seq technology and lack of count data modeling for clustering, the current practice is to normalize count expression data into continuous measures and apply existing models with Gaussian assumption. In this paper, we develop a negative binomial mixture model with lasso or fused lasso gene regularization to cluster samples (small n) with high-dimensional g…
Topic modeling is widely studied for the dimension reduction and analysis of documents. However, it is formulated as a difficult optimization problem. Current approximate solutions also suffer from inaccurate model- or data-assumptions. To deal with the above problems, we propose a polynomial-time deep topic model with no model and data assumptions. Specifically, we first apply multilayer bootstrap network (MBN), which is an unsupervised deep model, to reduce the dimension of documents, and then use the low-dimensional data representations or their clustering results as the target of supervise…
The network Lasso is a recently proposed convex optimization method for machine learning from massive network structured datasets, i.e., big data over networks. It is a variant of the well-known least absolute shrinkage and selection operator (Lasso), which is underlying many methods in learning and signal processing involving sparse models. Highly scalable implementations of the network Lasso can be obtained by state-of-the art proximal methods, e.g., the alternating direction method of multipliers (ADMM). By generalizing the concept of the compatibility condition put forward by van de Geer a…
Convex optimization is an essential tool for modern data analysis, as it provides a framework to formulate and solve many problems in machine learning and data mining. However, general convex optimization solvers do not scale well, and scalable solvers are often specialized to only work on a narrow class of problems. Therefore, there is a need for simple, scalable algorithms that can solve many common optimization problems. In this paper, we introduce the \emph{network lasso}, a generalization of the group lasso to a network setting that allows for simultaneous clustering and optimization on g…
We consider estimation in a high-dimensional linear model with strongly correlated variables. We propose to cluster the variables first and do subsequent sparse estimation such as the Lasso for cluster-representatives or the group Lasso based on the structure from the clusters. Regarding the first step, we present a novel and bottom-up agglomerative clustering algorithm based on canonical correlations, and we show that it finds an optimal solution and is statistically consistent. We also present some theoretical arguments that canonical correlation based clustering leads to a better-posed comp…
Amirkabir University of Technology（阿米卡比尔理工大学）；Université de Mons（蒙斯大学）；Faculté Polytechnique（理工学院）
Sparse subspace clustering (SSC) is one of the current state-of-the-art methods for partitioning data points into the union of subspaces, with strong theoretical guarantees. However, it is not practical for large data sets as it requires solving a LASSO problem for each data point, where the number of variables in each LASSO problem is the number of data points. To improve the scalability of SSC, we propose to select a few sets of anchor points using a randomized hierarchical clustering method, and, for each set of anchor points, solve the LASSO problems for each data point allowing only ancho…
Kyoto University（京都大学）；NTT Communication Science Laboratories（NTT通信科学实验室）；University College London（伦敦大学学院）；Aalto University（阿尔托大学）
We introduce the localized Lasso, which is suited for learning models that are both interpretable and have a high predictive power in problems with high dimensionality $d$ and small sample size $n$. More specifically, we consider a function defined by local sparse models, one at each data point. We introduce sample-wise network regularization to borrow strength across the models, and sample-wise exclusive group sparsity (a.k.a., $\ell_{1,2}$ norm) to introduce diversity into the choice of feature sets in the local models. The local models are interpretable in terms of similarity of their spars…
Sparse modelling or model selection with categorical data is challenging even for a moderate number of variables, because one parameter is roughly needed to encode one category or level. The Group Lasso is a well known efficient algorithm for selection continuous or categorical variables, but all estimates related to a selected factor usually differ. Therefore, a fitted model may not be sparse, which makes the model interpretation difficult. To obtain a sparse solution of the Group Lasso we propose the following two-step procedure: first, we reduce data dimensionality using the Group Lasso; th…
Ride sharing has important implications in terms of environmental, social and individual goals by reducing carbon footprints, fostering social interactions and economizing commuter costs. The ride sharing systems that are commonly available lack adaptive and scalable techniques that can simultaneously learn from the large scale data and predict in real-time dynamic fashion. In this paper, we study such a problem towards a smart city initiative, where a generic ride sharing system is conceived capable of making predictions about ride share opportunities based on the historically recorded data w…
Mixture models are becoming a popular tool for the clustering and classification of high-dimensional data. In such high dimensional applications, model selection is problematic. The Bayesian information criterion, which is popular in lower dimensional applications, tends to underestimate the true number of components in high dimensions. We introduce an adaptive LASSO-penalized BIC (ALPBIC) to mitigate this problem. This efficacy of the ALPBIC is illustrated via applications of parsimonious mixtures of factor analyzers. The selection of the best model by ALPBIC is shown to be consistent with in…
We propose networked exponential families to jointly leverage the information in the topology as well as the attributes (features) of networked data points. Networked exponential families are a flexible probabilistic model for heterogeneous datasets with intrinsic network structure. These models can be learnt efficiently using network Lasso which implicitly pools or clusters the data points according to the intrinsic network structure and the local likelihood. The resulting method can be formulated as a non-smooth convex optimization problem which we solve using a primal-dual splitting method.…
University of Gothenburg（哥德堡大学）；Chalmers University of Technology（查尔姆斯理工大学）
High-dimensional data sets are often analyzed and explored via the construction of a latent low-dimensional space which enables convenient visualization and efficient predictive modeling or clustering. For complex data structures, linear dimensionality reduction techniques like PCA may not be sufficiently flexible to enable low-dimensional representation. Non-linear dimension reduction techniques, like kernel PCA and autoencoders, suffer from loss of interpretability since each latent variable is dependent of all input dimensions. To address this limitation, we here present path lasso penalize…
Group-Lasso (gLasso) identifies important explanatory factors in predicting the response variable by considering the grouping structure over input variables. However, most existing algorithms for gLasso are not scalable to deal with large-scale datasets, which are becoming a norm in many applications. In this paper, we present a divide-and-conquer based parallel algorithm (DC-gLasso) to scale up gLasso in the tasks of regression with grouping structures. DC-gLasso only needs two iterations to collect and aggregate the local estimates on subsets of the data, and is provably correct to recover t…
In this chapter we review the main literature related to kernel spectral clustering (KSC), an approach to clustering cast within a kernel-based optimization setting. KSC represents a least-squares support vector machine based formulation of spectral clustering described by a weighted kernel PCA objective. Just as in the classifier case, the binary clustering model is expressed by a hyperplane in a high dimensional space induced by a kernel. In addition, the multi-way clustering can be obtained by combining a set of binary decision functions via an Error Correcting Output Codes (ECOC) encoding …
Sparsity-based subspace clustering algorithms have attracted significant attention thanks to their excellent performance in practical applications. A prominent example is the sparse subspace clustering (SSC) algorithm by Elhamifar and Vidal, which performs spectral clustering based on an adjacency matrix obtained by sparsely representing each data point in terms of all the other data points via the Lasso. When the number of data points is large or the dimension of the ambient space is high, the computational complexity of SSC quickly becomes prohibitive. Dyer et al. observed that SSC-OMP obtai…
The University of Texas Health Science Center at Houston（德克萨斯大学休斯顿健康科学中心）；Fudan University（复旦大学）
Due to advances in sensors, growing large and complex medical image data have the ability to visualize the pathological change in the cellular or even the molecular level or anatomical changes in tissues and organs. As a consequence, the medical images have the potential to enhance diagnosis of disease, prediction of clinical outcomes, characterization of disease progression, management of health care and development of treatments, but also pose great methodological and computational challenges for representation and selection of features in image cluster analysis. To address these challenges,…
We consider tests of significance in the setting of the graphical lasso for inverse covariance matrix estimation. We propose a simple test statistic based on a subsequence of the knots in the graphical lasso path. We show that this statistic has an exponential asymptotic null distribution, under the null hypothesis that the model contains the true connected components. Though the null distribution is asymptotic, we show through simulation that it provides a close approximation to the true distribution at reasonable sample sizes. Thus the test provides a simple, tractable test for the significa…
Given a gene expression data array of a list of bladder cancer patients with their tumor states, it may be difficult to determine which genes can operate as disease markers when the array is large and possibly contains outliers and missing data. An additional difficulty is that observations (tumor states) in the regression problem are discrete ones. In this article, we solve these problems on concrete data using first a clustering approach, followed by Least Absolute Shrinkage and Selection Operator (LASSO) estimators in a nonlinear regression problem involving discrete variables, as described…
University of Salerno（萨勒诺大学）；IMT School for Advanced Studies（IMT高等研究院）
World Input-Output (I/O) matrices provide the networks of within- and cross-country economic relations. In the context of I/O analysis, the methodology adopted by national statistical offices in data collection raises the issue of obtaining reliable data in a timely fashion and it makes the reconstruction of (part of) the I/O matrices of particular interest. In this work, we propose a method combining hierarchical clustering and Matrix Completion (MC) with a LASSO-like nuclear norm penalty, to impute missing entries of a partially unknown I/O matrix. Through simulations based on synthetic matr…
New York University School of Medicine（纽约大学医学院）；Merck Research Laboratories（默克研究实验室）；University of Miami School of Business Administration（迈阿密大学工商管理学院）；New Jersey Institute of Technology（新泽西理工学院）
Convex clustering, a convex relaxation of k-means clustering and hierarchical clustering, has drawn recent attentions since it nicely addresses the instability issue of traditional nonconvex clustering methods. Although its computational and statistical properties have been recently studied, the performance of convex clustering has not yet been investigated in the high-dimensional clustering scenario, where the data contains a large number of features and many of them carry no information about the clustering structure. In this paper, we demonstrate that the performance of convex clustering co…
Feature selection is an important and challenging task in high dimensional clustering. For example, in genomics, there may only be a small number of genes that are differentially expressed, which are informative to the overall clustering structure. Existing feature selection methods, such as Sparse K-means, rarely tackle the problem of accounting features that can only separate a subset of clusters. In genomics, it is highly likely that a gene can only define one subtype against all the other subtypes or distinguish a pair of subtypes but not others. In this paper, we propose a K-means based c…
The University of Hong Kong（香港大学）；Simon Fraser University（西蒙弗雷泽大学）
We study the problem of applying spectral clustering to cluster multi-scale data, which is data whose clusters are of various sizes and densities. Traditional spectral clustering techniques discover clusters by processing a similarity matrix that reflects the proximity of objects. For multi-scale data, distance-based similarity is not effective because objects of a sparse cluster could be far apart while those of a dense cluster have to be sufficiently close. Following [16], we solve the problem of spectral clustering on multi-scale data by integrating the concept of objects' "reachability sim…
The network Lasso (nLasso) has been proposed recently as an efficient learning algorithm for massive networked data sets (big data over networks). It extends the well-known least absolute shrinkage and selection operator (Lasso) from learning sparse (generalized) linear models to network models. Efficient implementations of the nLasso have been obtained using convex optimization methods lending to scalable message passing protocols. In this paper, we analyze the statistical properties of nLasso when applied to localized linear regression problems involving networked data. Our main result is a …
Classification with a sparsity constraint on the solution plays a central role in many high dimensional machine learning applications. In some cases, the features can be grouped together so that entire subsets of features can be selected or not selected. In many applications, however, this can be too restrictive. In this paper, we are interested in a less restrictive form of structured sparse feature selection: we assume that while features can be grouped according to some notion of similarity, not all features in a group need be selected for the task at hand. When the groups are comprised of …
For regularized estimation, the upper tail behavior of the random Lipschitz coefficient associated with empirical loss functions is known to play an important role in the error bound of Lasso for high dimensional generalized linear models. The upper tail behavior is known for linear models but much less so for nonlinear models. We establish exponential type inequalities for the upper tail of the coefficient and illustrate an application of the results to Lasso likelihood estimation for high dimensional generalized linear models.
The development and use of dimension reduction methods is prevalent in modern statistical literature. This paper reviews a class of dimension reduction techniques which aim to simultaneously select relevant predictors and find clusters within them which share a common effect on the response. Such methods have been shown to have superior performance relative to OLS estimates and the lasso [Tibshirani, 1996] especially when multicollinearity in the predictors is present. Their applications, which include genetics, epidemiology, and fMRI studies, are also discussed.
l1 reweighting algorithms are very popular in sparse signal recovery and compressed sensing, since in the practice they have been observed to outperform classical l1 methods. Nevertheless, the theoretical analysis of their convergence is a critical point, and generally is limited to the convergence of the functional to a local minimum or to subsequence convergence. In this letter, we propose a new convergence analysis of a Lasso l1 reweighting method, based on the observation that the algorithm is an alternated convex search for a biconvex problem. Based on that, we are able to prove the numer…
Upper and lower bounds are derived for the Gaussian mean width of the intersection of a convex hull of $M$ points with an Euclidean ball of a given radius. The upper bound holds for any collection of extreme point bounded in Euclidean norm. The upper bound and the lower bound match up to a multiplicative constant whenever the extreme points satisfy a one sided Restricted Isometry Property. This bound is then applied to study the Lasso estimator in fixed-design regression, the Empirical Risk Minimizer in the anisotropic persistence problem, and the convex aggregation problem in density estimati…
Relevant methods of variable selection have been proposed in model-based clustering and classification. These methods are making use of backward or forward procedures to define the roles of the variables. Unfortunately, these stepwise procedures are terribly slow and make these variable selection algorithms inefficient to treat large data sets. In this paper, an alternative regularization approach of variable selection is proposed for model-based clustering and classification. In this approach, the variables are first ranked with a lasso-like procedure in order to avoid painfully slow stepwise…
The fused lasso, also known as total-variation denoising, is a locally-adaptive function estimator over a regular grid of design points. In this paper, we extend the fused lasso to settings in which the points do not occur on a regular grid, leading to an approach for non-parametric regression. This approach, which we call the $K$-nearest neighbors ($K$-NN) fused lasso, involves (i) computing the $K$-NN graph of the design points; and (ii) performing the fused lasso over this $K$-NN graph. We show that this procedure has a number of theoretical advantages over competing approaches: specificall…
We propose a new algorithm for solving the graph-fused lasso (GFL), a method for parameter estimation that operates under the assumption that the signal tends to be locally constant over a predefined graph structure. Our key insight is to decompose the graph into a set of trails which can then each be solved efficiently using techniques for the ordinary (1D) fused lasso. We leverage these trails in a proximal algorithm that alternates between closed form primal updates and fast dual trail updates. The resulting techinque is both faster than previous GFL methods and more flexible in the choice …
We focus on solving the clustered lasso problem, which is a least squares problem with the $\ell_1$-type penalties imposed on both the coefficients and their pairwise differences to learn the group structure of the regression parameters. Here we first reformulate the clustered lasso regularizer as a weighted ordered-lasso regularizer, which is essential in reducing the computational cost from $O(n^2)$ to $O(n\log (n))$. We then propose an inexact semismooth Newton augmented Lagrangian ({\sc Ssnal}) algorithm to solve the clustered lasso problem or its dual via this equivalent formulation, depe…
We model and study the problem of localizing a set of sparse forcing inputs for linear dynamical systems from noisy measurements when the initial state is unknown. This problem is of particular relevance to detecting forced oscillations in electric power networks. We express measurements as an additive model comprising the initial state and inputs grouped over time, both expanded in terms of the basis functions (i.e., impulse response coefficients). Using this model, with probabilistic guarantees, we recover the locations and simultaneously estimate the initial state and forcing inputs using a…
In this paper, we consider clustering data that is assumed to come from one of finitely many pointed convex polyhedral cones. This model is referred to as the Union of Polyhedral Cones (UOPC) model. Similar to the Union of Subspaces (UOS) model where each data from each subspace is generated from a (unknown) basis, in the UOPC model each data from each cone is assumed to be generated from a finite number of (unknown) \emph{extreme rays}.To cluster data under this model, we consider several algorithms - (a) Sparse Subspace Clustering by Non-negative constraints Lasso (NCL), (b) Least squares ap…
We consider the problem of estimating a sparse multi-response regression function, with an application to expression quantitative trait locus (eQTL) mapping, where the goal is to discover genetic variations that influence gene-expression levels. In particular, we investigate a shrinkage technique capable of capturing a given hierarchical structure over the responses, such as a hierarchical clustering tree with leaf nodes for responses and internal nodes for clusters of related responses at multiple granularity, and we seek to leverage this structure to recover covariates relevant to each hiera…
Finite mixture regression models are useful for modeling the relationship between response and predictors, arising from different subpopulations. In this article, we study high-dimensional predic- tors and high-dimensional response, and propose two procedures to deal with this issue. We propose to use the Lasso estimator to take into account the sparsity, and a penalty on the rank, to take into account the matrix structure. Then, we extend these procedures to the functional case, where predictors and responses are functions. For this purpose, we use a wavelet-based approach. Finally, for each …
We study the problem of localizing multiple sources of forced oscillations (FOs) and estimating their characteristics, such as frequency, phase, and amplitude, using noisy PMU measurements. For each source location, we model the input oscillation as a sum of unknown sinusoidal terms. This allows us to obtain a linear relationship between measurements and the inputs at the unknown sinusoids' frequencies in the frequency domain. We determine these frequencies by thresholding the empirical spectrum of the noisy measurements. Assuming sparsity in the number of FOs' locations and the number of sinu…
This paper studies the sensitivity to the observations of the block/group Lasso solution to an overdetermined linear regression model. Such a regularization is known to promote sparsity patterns structured as nonoverlapping groups of coefficients. Our main contribution provides a local parameterization of the solution with respect to the observations. As a byproduct, we give an unbiased estimate of the degrees of freedom of the group Lasso. Among other applications of such results, one can choose in a principled and objective way the regularization parameter of the Lasso through model selectio…
