In this paper, we propose an analytical method for performing tractable approximate Gaussian inference (TAGI) in Bayesian neural networks. The method enables the analytical Gaussian inference of the posterior mean vector and diagonal covariance matrix for weights and biases. The method proposed has a computational complexity of $\mathcal{O}(n)$ with respect to the number of parameters $n$, and the tests performed on regression and classification benchmarks confirm that, for a same network architecture, it matches the performance of existing methods relying on gradient backpropagation.
National Institute of Informatics（国立信息学研究所）；Tokyo Institute of Technology（东京工业大学）
The stochastic block model (SBM) is a generative model revealing macroscopic structures in graphs. Bayesian methods are used for (i) cluster assignment inference and (ii) model selection for the number of clusters. In this paper, we study the behavior of Bayesian inference in the SBM in the large sample limit. Combining variational approximation and Laplace's method, a consistent criterion of the fully marginalized log-likelihood is established. Based on that, we derive a tractable algorithm that solves tasks (i) and (ii) concurrently, obviating the need for an outer loop to check all model ca…
With few exceptions, neural networks have been relying on backpropagation and gradient descent as the inference engine in order to learn the model parameters, because the closed-form Bayesian inference for neural networks has been considered to be intractable. In this paper, we show how we can leverage the tractable approximate Gaussian inference's (TAGI) capabilities to infer hidden states, rather than only using it for inferring the network's parameters. One novel aspect it allows is to infer hidden states through the imposition of constraints designed to achieve specific objectives, as illu…
Reinforcement learning (RL) has gained increasing interest since the demonstration it was able to reach human performance on video game benchmarks using deep Q-learning (DQN). The current consensus for training neural networks on such complex environments is to rely on gradient-based optimization. Although alternative Bayesian deep learning methods exist, most of them still rely on gradient-based optimization, and they typically do not scale on benchmarks such as the Atari game environment. Moreover none of these approaches allow performing the analytical inference for the weights and biases d…
Carnegie Mellon University（卡内基梅隆大学）；Massachusetts Institute of Technology（麻省理工学院）
In this paper we present decomposable priors, a family of priors over structure and parameters of tree belief nets for which Bayesian learning with complete observations is tractable, in the sense that the posterior is also decomposable and can be completely determined analytically in polynomial time. This follows from two main results: First, we show that factored distributions over spanning trees in a graph can be integrated in closed form. Second, we examine priors over tree parameters and show that a set of assumptions similar to (Heckerman and al. 1995) constrain the tree parameter priors…
Inference in popular nonparametric Bayesian models typically relies on sampling or other approximations. This paper presents a general methodology for constructing novel tractable nonparametric Bayesian methods by applying the kernel trick to inference in a parametric Bayesian model. For example, Gaussian process regression can be derived this way from Bayesian linear regression. Despite the success of the Gaussian process framework, the kernel trick is rarely explicitly considered in the Bayesian literature. In this paper, we aim to fill this gap and demonstrate the potential of applying the …
We consider the problem of transforming samples from one continuous source distribution into samples from another target distribution. We demonstrate with optimal transport theory that when the source distribution can be easily sampled from and the target distribution is log-concave, this can be tractably solved with convex optimization. We show that a special case of this, when the source is the prior and the target is the posterior, is Bayesian inference. Here, we can tractably calculate the normalization constant and draw posterior i.i.d. samples. Remarkably, our Bayesian tractability crite…
We study the problem of optimizing expensive blackbox functions over combinatorial spaces (e.g., sets, sequences, trees, and graphs). BOCS (Baptista and Poloczek, 2018) is a state-of-the-art Bayesian optimization method for tractable statistical models, which performs semi-definite programming based acquisition function optimization (AFO) to select the next structure for evaluation. Unfortunately, BOCS scales poorly for large number of binary and/or categorical variables. Based on recent advances in submodular relaxation (Ito and Fujimaki, 2016) for solving Binary Quadratic Programs, we study …
The process of dynamic state estimation (filtering) based on point process observations is in general intractable. Numerical sampling techniques are often practically useful, but lead to limited conceptual insight about optimal encoding/decoding strategies, which are of significant relevance to Computational Neuroscience. We develop an analytically tractable Bayesian approximation to optimal filtering based on point process observations, which allows us to introduce distributional assumptions about sensory cell properties, that greatly facilitates the analysis of optimal encoding in situations…
David R. Cheriton School of Computer Science, University of Waterloo（滑铁卢大学大卫·R·切里顿计算机科学学院）
The Gaussian mixture model is a classic technique for clustering and data modeling that is used in numerous applications. With the rise of big data, there is a need for parameter estimation techniques that can handle streaming data and distribute the computation over several processors. While online variants of the Expectation Maximization (EM) algorithm exist, their data efficiency is reduced by a stochastic approximation of the E-step and it is not clear how to distribute the computation over multiple processors. We propose a Bayesian learning technique that lends itself naturally to online …
Beijing University of Aeronautics and Astronautics（北京航空航天大学）；University of Utah（犹他大学）；Chongqing University（重庆大学）；Beihang University（北京航空航天大学）
Challenges in multi-fidelity modeling relate to accuracy, uncertainty estimation and high-dimensionality. A novel additive structure is introduced in which the highest fidelity solution is written as a sum of the lowest fidelity solution and residuals between the solutions at successive fidelity levels, with Gaussian process priors placed over the low fidelity solution and each of the residuals. The resulting model is equipped with a closed-form solution for the predictive posterior, making it applicable to advanced, high-dimensional tasks that require uncertainty estimation. Its advantages ar…
There is a growing interest in learning how the distribution of a response variable changes with a set of predictors. Bayesian nonparametric dependent mixture models provide a flexible approach to address this goal. However, several formulations require computationally demanding algorithms for posterior inference. Motivated by this issue, we study a class of predictor-dependent infinite mixture models, which relies on a simple representation of the stick-breaking prior via sequential logistic regressions. This formulation maintains the same desirable properties of popular predictor-dependent s…
We introduce a Bayesian Gaussian process latent variable model that explicitly captures spatial correlations in data using a parameterized spatial kernel and leveraging structure-exploiting algebra on the model covariance matrices for computational tractability. Inference is made tractable through a collapsed variational bound with similar computational complexity to that of the traditional Bayesian GP-LVM. Inference over partially-observed test cases is achieved by optimizing a "partially-collapsed" bound. Modeling high-dimensional time series systems is enabled through use of a dynamical GP …
University of Amsterdam（阿姆斯特丹大学）；TNO Intelligent Imaging（荷兰应用科学研究组织智能成像）；Canadian Institute For Advanced Research (CIFAR)（加拿大高级研究院）
We reinterpret multiplicative noise in neural networks as auxiliary random variables that augment the approximate posterior in a variational setting for Bayesian neural networks. We show that through this interpretation it is both efficient and straightforward to improve the approximation by employing normalizing flows while still allowing for local reparametrizations and a tractable lower bound. In experiments we show that with this new approximation we can significantly improve upon classical mean field for Bayesian neural networks on both predictive accuracy as well as predictive uncertaint…
University of Waterloo（滑铁卢大学）；University of Georgia（佐治亚大学）
Sum-Product Networks (SPN) have recently emerged as a new class of tractable probabilistic graphical models. Unlike Bayesian networks and Markov networks where inference may be exponential in the size of the network, inference in SPNs is in time linear in the size of the network. Since SPNs represent distributions over a fixed set of variables only, we propose dynamic sum product networks (DSPNs) as a generalization of SPNs for sequence data of varying length. A DSPN consists of a template network that is repeated as many times as needed to model data sequences of any length. We present a loca…
Bayesian network classifiers are used in many fields, and one common class of classifiers are naive Bayes classifiers. In this paper, we introduce an approach for reasoning about Bayesian network classifiers in which we explicitly convert them into Ordered Decision Diagrams (ODDs), which are then used to reason about the properties of these classifiers. Specifically, we present an algorithm for converting any naive Bayes classifier into an ODD, and we show theoretically and experimentally that this algorithm can give us an ODD that is tractable in size even given an intractable number of insta…
Taiyuan University of Technology（太原理工大学）；Beihang University（北京航空航天大学）
We present a new method to approximate posterior probabilities of Bayesian Network using Deep Neural Network. Experiment results on several public Bayesian Network datasets shows that Deep Neural Network is capable of learning joint probability distri- bution of Bayesian Network by learning from a few observation and posterior probability distribution pairs with high accuracy. Compared with traditional approximate method likelihood weighting sampling algorithm, our method is much faster and gains higher accuracy in medium sized Bayesian Network. Another advantage of our method is that our meth…
We build a Bayesian contextual classification model using an optimistic score ratio for robust binary classification when there is limited information on the class-conditional, or contextual, distribution. The optimistic score searches for the distribution that is most plausible to explain the observed outcomes in the testing sample among all distributions belonging to the contextual ambiguity set which is prescribed using a limited structural constraint on the mean vector and the covariance matrix of the underlying contextual distribution. We show that the Bayesian classifier using the optimi…
In this paper we extend the work of Smith and Papamichail (1999) and present fast approximate Bayesian algorithms for learning in complex scenarios where at any time frame, the relationships between explanatory state space variables can be described by a Bayesian network that evolve dynamically over time and the observations taken are not necessarily Gaussian. It uses recent developments in approximate Bayesian forecasting methods in combination with more familiar Gaussian propagation algorithms on junction trees. The procedure for learning state parameters from data is given explicitly for co…
Helsinki Institute for Information Technology HIIT（赫尔辛基信息技术研究所 HIIT）；University of Helsinki（赫尔辛基大学）
Bayesian models quantify uncertainty and facilitate optimal decision-making in downstream applications. For most models, however, practitioners are forced to use approximate inference techniques that lead to sub-optimal decisions due to incorrect posterior predictive distributions. We present a novel approach that corrects for inaccuracies in posterior inference by altering the decision-making process. We train a separate model to make optimal decisions under the approximate posterior, combining interpretable Bayesian modeling with optimization of direct predictive accuracy in a principled fas…
We introduce a numerically tractable formulation of Bayesian joint models for longitudinal and survival data. The longitudinal process is modelled using generalised linear mixed models, while the survival process is modelled using a parametric general hazard structure. The two processes are linked by sharing fixed and random effects, separating the effects that play a role at the time scale from those that affect the hazard scale. This strategy allows for the inclusion of non-linear and time-dependent effects while avoiding the need for numerical integration, which facilitates the implementati…
University of Massachusetts Amherst（马萨诸塞大学阿默斯特分校）；US Army Research Laboratory（美国陆军研究实验室）
While deep learning methods continue to improve in predictive accuracy on a wide range of application domains, significant issues remain with other aspects of their performance including their ability to quantify uncertainty and their robustness. Recent advances in approximate Bayesian inference hold significant promise for addressing these concerns, but the computational scalability of these methods can be problematic when applied to large-scale models. In this paper, we describe initial work on the development ofURSABench(the Uncertainty, Robustness, Scalability, and Accu-racy Benchmark), an…
University of Massachusetts Amherst（马萨诸塞大学阿默斯特分校）；IBM Research（IBM研究院）
Bayesian decision theory provides an elegant framework for acting optimally under uncertainty when tractable posterior distributions are available. Modern Bayesian models, however, typically involve intractable posteriors that are approximated with, potentially crude, surrogates. This difficulty has engendered loss-calibrated techniques that aim to learn posterior approximations that favor high-utility decisions. In this paper, focusing on Bayesian neural networks, we develop methods for correcting approximate posterior predictive distributions encouraging them to prefer high-utility decisions…
We present a scalable and robust Bayesian inference method for linear state space models. The method is applied to demand forecasting in the context of a large e-commerce platform, paying special attention to intermittent and bursty target statistics. Inference is approximated by the Newton-Raphson algorithm, reduced to linear-time Kalman smoothing, which allows us to operate on several orders of magnitude larger problems than previous related work. In a study on large real-world sales datasets, our method outperforms competing approaches on fast and medium moving items.
Approximate Bayesian inference methods provide a powerful suite of tools for finding approximations to intractable posterior distributions. However, machine learning applications typically involve selecting actions, which -- in a Bayesian setting -- depend on the posterior distribution only via its contribution to expected utility. A growing body of work on loss-calibrated approximate inference methods has therefore sought to develop posterior approximations sensitive to the influence of the utility function. Here we introduce loss-calibrated expectation propagation (Loss-EP), a loss-calibrate…
We develop BatchBALD, a tractable approximation to the mutual information between a batch of points and model parameters, which we use as an acquisition function to select multiple informative points jointly for the task of deep Bayesian active learning. BatchBALD is a greedy linear-time $1 - \frac{1}{e}$-approximate algorithm amenable to dynamic programming and efficient caching. We compare BatchBALD to the commonly used approach for batch data acquisition and find that the current approach acquires similar and redundant points, sometimes performing worse than randomly acquiring data. We fini…
Tokyo Institute of Technology（东京工业大学）；Hiroshima University（广岛大学）
Cross-validation (CV) is a technique for evaluating the ability of statistical models/learning systems based on a given data set. Despite its wide applicability, the rather heavy computational cost can prevent its use as the system size grows. To resolve this difficulty in the case of Bayesian linear regression, we develop a formula for evaluating the leave-one-out CV error approximately without actually performing CV. The usefulness of the developed formula is tested by statistical mechanical analysis for a synthetic model. This is confirmed by application to a real-world supernova data set a…
University of Tübingen（蒂宾根大学）；Max Planck Institute for Intelligent Systems（马克斯·普朗克智能系统研究所）
Full Bayesian posteriors are rarely analytically tractable, which is why real-world Bayesian inference heavily relies on approximate techniques. Approximations generally differ from the true posterior and require diagnostic tools to assess whether the inference can still be trusted. We investigate a new approach to diagnosing approximate inference: the approximation mismatch is attributed to a change in the inductive bias by treating the approximations as exact and reverse-engineering the corresponding prior. We show that the problem is more complicated than it appears to be at first glance, b…
Convolutional neural networks (CNNs) work well on large datasets. But labelled data is hard to collect, and in some applications larger amounts of data are not available. The problem then is how to use CNNs with small data -- as CNNs overfit quickly. We present an efficient Bayesian CNN, offering better robustness to over-fitting on small data than traditional approaches. This is by placing a probability distribution over the CNN's kernels. We approximate our model's intractable posterior with Bernoulli variational distributions, requiring no additional model parameters. On the theoretical sid…
Current approaches in approximate inference for Bayesian neural networks minimise the Kullback-Leibler divergence to approximate the true posterior over the weights. However, this approximation is without knowledge of the final application, and therefore cannot guarantee optimal predictions for a given task. To make more suitable task-specific approximations, we introduce a new loss-calibrated evidence lower bound for Bayesian neural networks in the context of supervised learning, informed by Bayesian decision theory. By introducing a lower bound that depends on a utility function, we ensure t…
Recent advances in deep reinforcement learning have made significant strides in performance on applications such as Go and Atari games. However, developing practical methods to balance exploration and exploitation in complex domains remains largely unsolved. Thompson Sampling and its extension to reinforcement learning provide an elegant approach to exploration that only requires access to posterior samples of the model. At the same time, advances in approximate Bayesian methods have made posterior approximation for flexible neural network models practical. Thus, it is attractive to consider a…
Bayesian structure learning allows one to capture uncertainty over the causal directed acyclic graph (DAG) responsible for generating given data. In this work, we present Tractable Uncertainty for STructure learning (TRUST), a framework for approximate posterior inference that relies on probabilistic circuits as the representation of our posterior belief. In contrast to sample-based posterior approximations, our representation can capture a much richer space of DAGs, while also being able to tractably reason about the uncertainty through a range of useful inference queries. We empirically show…
Microsoft Research（微软研究院）；University of Sydney（悉尼大学）
We provide a method for approximating Bayesian inference using rejection sampling. We not only make the process efficient, but also dramatically reduce the memory required relative to conventional methods by combining rejection sampling with particle filtering. We also provide an approximate form of rejection sampling that makes rejection filtering tractable in cases where exact rejection sampling is not efficient. Finally, we present several numerical examples of rejection filtering that show its ability to track time dependent parameters in online settings and also benchmark its performance …
Bayesian variable selection often assumes normality, but the effects of model misspecification are not sufficiently understood. There are sound reasons behind this assumption, particularly for large $p$: ease of interpretation, analytical and computational convenience. More flexible frameworks exist, including semi- or non-parametric models, often at the cost of some tractability. We propose a simple extension of the Normal model that allows for skewness and thicker-than-normal tails but preserves tractability. It leads to easy interpretation and a log-concave likelihood that facilitates optim…
Center for Perceptual Systems（感知系统中心）；University of Texas at Austin（德克萨斯大学奥斯汀分校）
The ultimate goal of optimization is to find the minimizer of a target function.However, typical criteria for active optimization often ignore the uncertainty about the minimizer. We propose a novel criterion for global optimization and an associated sequential active learning strategy using Gaussian processes.Our criterion is the reduction of uncertainty in the posterior distribution of the function minimizer. It can also flexibly incorporate multiple global minimizers. We implement a tractable approximation of the criterion and demonstrate that it obtains the global minimizer accurately comp…
Overcoming Selection Bias in Statistical Studies With Amortized Bayesian Inference
University of Bonn（波恩大学）；Institut Pasteur（巴斯德研究所）；University of Freiburg（弗赖堡大学）；LMU University Hospital（慕尼黑大学附属医院）；German Center for Infection Research（德国感染研究中心）；Fraunhofer Institute ITMP（弗劳恩霍夫ITMP研究所）；Max von Pettenkofer Institute（马克斯·冯·佩滕科弗研究所）；LMU Munich（慕尼黑大学）；German Research Center for Environmental Health（德国环境健康研究中心）；Institut Necker-Enfants Malades（内克-儿童疾病研究所）
Eindhoven University of Technology（埃因霍温理工大学）；KU Leuven（鲁汶大学）；Graz University of Technology（格拉茨理工大学）
Probabilistic circuits (PCs) are a prominent representation of probability distributions with tractable inference. While parameter learning in PCs is rigorously studied, structure learning is often more based on heuristics than on principled objectives. In this paper, we develop Bayesian structure scores for deterministic PCs, i.e., the structure likelihood with parameters marginalized out, which are well known as rigorous objectives for structure learning in probabilistic graphical models. When used within a greedy cutset algorithm, our scores effectively protect against overfitting and yield…
We propose a novel algorithm to solve the expectation propagation relaxation of Bayesian inference for continuous-variable graphical models. In contrast to most previous algorithms, our method is provably convergent. By marrying convergent EP ideas from (Opper&Winther 05) with covariance decoupling techniques (Wipf&Nagarajan 08, Nickisch&Seeger 09), it runs at least an order of magnitude faster than the most commonly used EP solver.
Dropout has recently emerged as a powerful and simple method for training neural networks preventing co-adaptation by stochastically omitting neurons. Dropout is currently not grounded in explicit modelling assumptions which so far has precluded its adoption in Bayesian modelling. Using Bayesian entropic reasoning we show that dropout can be interpreted as optimal inference under constraints. We demonstrate this on an analytically tractable regression model providing a Bayesian interpretation of its mechanism for regularizing and preventing co-adaptation as well as its connection to other Baye…
We develop a framework for generalized variational inference in infinite-dimensional function spaces and use it to construct a method termed Gaussian Wasserstein inference (GWI). GWI leverages the Wasserstein distance between Gaussian measures on the Hilbert space of square-integrable functions in order to determine a variational posterior using a tractable optimisation criterion and avoids pathologies arising in standard variational function space inference. An exciting application of GWI is the ability to use deep neural networks in the variational parametrisation of GWI, combining their sup…
Robust Predictive Uncertainty and Double Descent in Contaminated Bayesian Random Features
The University of Manchester, UK（英国曼彻斯特大学）；University of Pisa, Italy（意大利比萨大学）；Nanyang Technological University, Singapore（新加坡南洋理工大学）；Max Planck Institute for Mathematics in the Sciences, Germany（德国马克斯·普朗克数学研究所）
Variational approaches to approximate Bayesian inference provide very efficient means of performing parameter estimation and model selection. Among these, so-called variational-Laplace or VL schemes rely on Gaussian approximations to posterior densities on model parameters. In this note, we review the main variants of VL approaches, that follow from considering nonlinear models of continuous and/or categorical data. En passant, we also derive a few novel theoretical results that complete the portfolio of existing analyses of variational Bayesian approaches, including investigations of their as…
A functional approximation to implement Bayesian source separation analysis is introduced and applied to separation of the Cosmic Microwave Background (CMB) using WMAP data. The approximation allows for tractable full-sky map reconstructions at the scale of both WMAP and Planck data and models the spatial smoothness of sources through a Gaussian Markov random field prior. It is orders of magnitude faster than the usual MCMC approaches. The performance and limitations of the approximation are also discussed.
The main object of Bayesian statistical inference is the determination of posterior distributions. Sometimes these laws are given for quantities devoid of empirical value. This serious drawback vanishes when one confines oneself to considering a finite horizon framework. However, assuming infinite exchangeability gives rise to fairly tractable {\it a posteriori} quantities, which is very attractive in applications. Hence, with a view to a reconciliation between these two aspects of the Bayesian way of reasoning, in this paper we provide quantitative comparisons between posterior distributions …
This paper presents a Markov chain Monte Carlo method to generate approximate posterior samples in retrospective multiple changepoint problems where the number of changes is not known in advance. The method uses conjugate models whereby the marginal likelihood for the data between consecutive changepoints is tractable. Inclusion of hyperpriors gives a near automatic algorithm providing a robust alternative to popular filtering recursions approaches in cases which may be sensitive to prior information. Three real examples are used to demonstrate the proposed approach.
Complex simulators have become a ubiquitous tool in many scientific disciplines, providing high-fidelity, implicit probabilistic models of natural and social phenomena. Unfortunately, they typically lack the tractability required for conventional statistical analysis. Approximate Bayesian computation (ABC) has emerged as a key method in simulation-based inference, wherein the true model likelihood and posterior are approximated using samples from the simulator. In this paper, we draw connections between ABC and generalized Bayesian inference (GBI). First, we re-interpret the accept/reject step…
We consider Bayesian inference problems with computationally intensive likelihood functions. We propose a Gaussian process (GP) based method to approximate the joint distribution of the unknown parameters and the data. In particular, we write the joint density approximately as a product of an approximate posterior density and an exponentiated GP surrogate. We then provide an adaptive algorithm to construct such an approximation, where an active learning method is used to choose the design points. With numerical examples, we illustrate that the proposed method has competitive performance agains…
We consider the problem of approximate Bayesian parameter inference in non-linear state-space models with intractable likelihoods. Sequential Monte Carlo with approximate Bayesian computations (SMC-ABC) is one approach to approximate the likelihood in this type of models. However, such approximations can be noisy and computationally costly which hinders efficient implementations using standard methods based on optimisation and Monte Carlo methods. We propose a computationally efficient novel method based on the combination of Gaussian process optimisation and SMC-ABC to create a Laplace approx…
Iowa State University（爱荷华州立大学）；Department of Computer Science（计算机科学系）
We use the implicitization procedure to generate polynomial equality constraints on the set of distributions induced by local interventions on variables governed by a causal Bayesian network with hidden variables. We show how we may reduce the complexity of the implicitization problem and make the problem tractable in certain causal Bayesian networks. We also show some preliminary results on the algebraic structure of polynomial constraints. The results have applications in distinguishing between causal models and in testing causal models with combined observational and experimental data.
