RPnet: A Deep Learning approach for robust R Peak detection in noisy ECG
Healthcare Technology and Innovation Center (HTIC), Indian Institute of Technology (IIT-M)（印度理工学院（马德拉斯）医疗技术与创新中心）；Indian Institute of Technology, Madras (IITM)（印度理工学院马德拉斯分校）
Automatic detection of R-peaks in an Electrocardiogram signal is crucial in a multitude of applications including Heart Rate Variability (HRV) analysis and Cardio Vascular Disease(CVD) diagnosis. Although there have been numerous approaches that have successfully addressed the problem, there has been a notable dip in the performance of these existing detectors on ECG episodes that contain noise and HRV Irregulates. On the other hand, Deep Learning(DL) based methods have shown to be adept at modelling data that contain noise. In image to image translation, Unet is the fundamental block in many of the networks. In this work, a novel application of the Unet combined with Inception and Residual blocks is proposed to perform the extraction of R-peaks from an ECG. Furthermore, the problem formulation also robustly deals with issues of variability and sparsity of ECG R-peaks. The proposed network was trained on a database containing ECG episodes that have CVD and was tested against three traditional ECG detectors on a validation set. The model achieved an F1 score of 0.9837, which is a substantial improvement over the other beat detectors. Furthermore, the model was also evaluated on three other databases. The proposed network achieved high F1 scores across all datasets which established its generalizing capacity. Additionally, a thorough analysis of the model's performance in the presence of different levels of noise was carried out.
Electrocardiogram (ECG) signals are beneficial in diagnosing cardiovascular diseases, which are one of the leading causes of death. However, they are often contaminated by noise artifacts and affect the automatic and manual diagnosis process. Automatic deep learning-based examination of ECG signals can lead to inaccurate diagnosis, and manual analysis involves rejection of noisy ECG samples by clinicians, which might cost extra time. To address this limitation, we present a two-stage deep learning-based framework to automatically detect the noisy ECG samples. Through extensive experiments and …
National Physical Laboratory（英国国家物理实验室）；University of Surrey（萨里大学）
The electrocardiogram (ECG) is one of the most widespread diagnostic tools in healthcare and supports the diagnosis of cardiovascular disorders. Deep learning methods are a successful and popular technique to detect indications of disorders from an ECG signal. However, there are open questions around the robustness of these methods to various factors, including physiological ECG noise. In this study we generate clean and noisy versions of an ECG dataset before applying Symmetric Projection Attractor Reconstruction (SPAR) and scalogram image transformations. A pretrained convolutional neural ne…
It is challenging to visually detect heart disease from the electrocardiographic (ECG) signals. Implementing an automated ECG signal detection system can help diagnosis arrhythmia in order to improve the accuracy of diagnosis. In this paper, we proposed, implemented, and compared an automated system using two different frameworks of the combination of convolutional neural network (CNN) and long-short term memory (LSTM) for classifying normal sinus signals, atrial fibrillation, and other noisy signals. The dataset we used is from the MIT-BIT Arrhythmia Physionet. Our approach demonstrated that …
Method: In this study, a new method is introduced for distinguishing noise-free segments of ECG from noisy segments that use sample amplitude dispersion with an adoptive threshold for variance of samples amplitude and a method which uses compatibility of detected beats in ECG and some of the other signals which are related to the heart activity such as BP, arterial pressure (ART) and pulmonary artery pressure (PAP). A prioritization is applied in other pulsatile signals based on the amplitude and clarity of the peaks on them, and a fusion strategy is employed for segments on which ECG is noisy…
In this article, we propose a novel ECG classification framework for atrial fibrillation (AF) detection using spectro-temporal representation (i.e., time varying spectrum) and deep convolutional networks. In the first step we use a Bayesian spectro-temporal representation based on the estimation of time-varying coefficients of Fourier series using Kalman filter and smoother. Next, we derive an alternative model based on a stochastic oscillator differential equation to accelerate the estimation of the spectro-temporal representation in lengthy signals. Finally, after comparative evaluations of …
We describe techniques and specifications of MATLAB software to process ambulatory electrocardiogram (ECG) data. Through template-based beat identification and simple pattern recognition models on the intervals between regular heart beats, we filter noisy sections of waveform and ectopic beats. Our end-to-end process can be used towards analysis of ECG and calculation of heart rate variability metrics after beat adjustments, removals and interpolation. Classification and noise detection is assessed on the human-annotated MIT-BIH Arrythmia and Noise Stress Test Databases.
University College Dublin（都柏林大学学院）；National University of Singapore（新加坡国立大学）
Sudden cardiac death and arrhythmia account for a large percentage of all deaths worldwide. Electrocardiography (ECG) is the most widely used screening tool for cardiovascular diseases. Traditionally, ECG signals are classified manually, requiring experience and great skill, while being time-consuming and prone to error. Thus machine learning algorithms have been widely adopted because of their ability to perform complex data analysis. Features derived from the points of interest in ECG - mainly Q, R, and S, are widely used for arrhythmia detection. In this work, we demonstrate improved perfor…
We propose a novel deep learning based denoising filter selection algorithm for noisy Electrocardiograph (ECG) signal preprocessing. ECG signals measured under clinical conditions, such as those acquired using skin contact devices in hospitals, often contain baseline signal disturbances and unwanted artefacts; indeed for signals obtained outside of a clinical environment, such as heart rate signatures recorded using non-contact radar systems, the measurements contain greater levels of noise than those acquired under clinical conditions. In this paper, we focus on heart rate signals acquired us…
The classification of electrocardiographic (ECG) signals is a challenging problem for healthcare industry. Traditional supervised learning methods require a large number of labeled data which is usually expensive and difficult to obtain for ECG signals. Active learning is well-suited for ECG signal classification as it aims at selecting the best set of labeled data in order to maximize the classification performance. Motivated by the fact that ECG data are usually heavily unbalanced among different classes and the class labels are noisy as they are manually labeled, this paper proposes a novel…
Atrial Fibrillation (AF) is an abnormal heart rhythm which can trigger cardiac arrest and sudden death. Nevertheless, its interpretation is mostly done by medical experts due to high error rates of computerized interpretation. One study found that only about 66% of AF were correctly recognized from noisy ECGs. This is in part due to insufficient training data, class skewness, as well as semantical ambiguities caused by noisy segments in an ECG record. In this paper, we propose a K-margin-based Residual-Convolution-Recurrent neural network (K-margin-based RCR-net) for AF detection from noisy EC…
Electrocardiogram (ECG) signal is the most commonly used non-invasive tool in the assessment of cardiovascular diseases. Segmentation of the ECG signal to locate its constitutive waves, in particular the R-peaks, is a key step in ECG processing and analysis. Over the years, several segmentation and QRS complex detection algorithms have been proposed with different features; however, their performance highly depends on applying preprocessing steps which makes them unreliable in real-time data analysis of ambulatory care settings and remote monitoring systems, where the collected data is highly …
Stanford Online High School（斯坦福在线高中）；AliveCor, Inc.（AliveCor公司）
Mobile electrocardiogram (ECG) recording technologies represent a promising tool to fight the ongoing epidemic of cardiovascular diseases, which are responsible for more deaths globally than any other cause. While the ability to monitor one's heart activity at any time in any place is a crucial advantage of such technologies, it is also the cause of a drawback: signal noise due to environmental factors can render the ECGs illegible. In this work, we develop convolutional neural networks (CNNs) to automatically label ECGs for noise, training them on a novel noise-annotated dataset. By reducing …
School of Electrical and Electronics Engineering（电气与电子工程学院）；University of Manchester（曼彻斯特大学）
Effective and powerful methods for denoising real electrocardiogram (ECG) signals are important for wearable sensors and devices. Deep Learning (DL) models have been used extensively in image processing and other domains with great success but only very recently have been used in processing ECG signals. This paper presents several DL models namely Convolutional Neural Networks (CNNs), Long Short-Term Memory (LSTM), Restricted Boltzmann Machine (RBM) together with the more conventional filtering methods (low pass filtering, high pass filtering, Notch filtering) and the standard wavelet-based te…
MECG-E: Mamba-based ECG Enhancer for Baseline Wander Removal
National Taiwan University（台湾大学）；University of Massachusetts Amherst（马萨诸塞大学阿默斯特分校）；National Institute of Information and Communications Technology（信息通信研究机构）
SDEMG: Score-based Diffusion Model for Surface Electromyographic Signal Denoising
National Yang Ming Chiao Tung University（国立阳明交通大学）；National Taiwan University（国立台湾大学）；National Taipei University of Technology（国立台北科技大学）；National Taiwan University of Science and Technology（国立台湾科技大学）；Academia Sinica（中央研究院）
Sberbank AI Lab（俄罗斯联邦储蓄银行人工智能实验室）；New York University（纽约大学）
Holter monitoring, a long-term ECG recording (24-hours and more), contains a large amount of valuable diagnostic information about the patient. Its interpretation becomes a difficult and time-consuming task for the doctor who analyzes them because every heartbeat needs to be classified, thus requiring highly accurate methods for automatic interpretation. In this paper, we present a three-stage process for analysing Holter recordings with robustness to noisy signal. First stage is a segmentation neural network (NN) with encoderdecoder architecture which detects positions of heartbeats. Second s…
University of Lille（里尔大学）；ENSAIT（国立高等艺术与纺织工业学院）；GEMTEX–Laboratoire de Génie et Matériaux Textiles（纺织工程与材料实验室）；University of Kent（肯特大学）
Deep learning play a vital role in classifying different arrhythmias using the electrocardiography (ECG) data. Nevertheless, training deep learning models normally requires a large amount of data and it can lead to privacy concerns. Unfortunately, a large amount of healthcare data cannot be easily collected from a single silo. Additionally, deep learning models are like black-box, with no explainability of the predicted results, which is often required in clinical healthcare. This limits the application of deep learning in real-world health systems. In this paper, we design a new explainable a…
AnyECG: Foundational Models for Multitask Cardiac Analysis in Real-World Settings
The College of Computer Science and Technology, Zhejiang University（浙江大学计算机科学与技术学院）；University of Illinois at Urbana-Champaign（伊利诺伊大学厄巴纳-香槟分校）；Antai College of Economics and Management, Shanghai Jiao Tong University（上海交通大学安泰经济与管理学院）；Information Hub, Hong Kong University of Science and Technology (Guangzhou)（香港科技大学（广州）信息枢纽）；the School of Public Health and Second Affiliated Hospital, Zhejiang University School of Medicine（浙江大学医学院公共卫生学院及第二附属医院）
Philips Research North America（飞利浦北美研究院）；Advanced Algorithm Research Center, Philips Healthcare（飞利浦医疗先进算法研究中心）
The development of new technology such as wearables that record high-quality single channel ECG, provides an opportunity for ECG screening in a larger population, especially for atrial fibrillation screening. The main goal of this study is to develop an automatic classification algorithm for normal sinus rhythm (NSR), atrial fibrillation (AF), other rhythms (O), and noise from a single channel short ECG segment (9-60 seconds). For this purpose, signal quality index (SQI) along with dense convolutional neural networks was used. Two convolutional neural network (CNN) models (main model that acce…
With tens of thousands of electrocardiogram (ECG) records processed by mobile cardiac event recorders every day, heart rhythm classification algorithms are an important tool for the continuous monitoring of patients at risk. We utilise an annotated dataset of 12,186 single-lead ECG recordings to build a diverse ensemble of recurrent neural networks (RNNs) that is able to distinguish between normal sinus rhythms, atrial fibrillation, other types of arrhythmia and signals that are too noisy to interpret. In order to ease learning over the temporal dimension, we introduce a novel task formulation…
With recently successful applications of deep learning in computer vision and general signal processing, deep learning has shown many unique advantages in medical signal processing. However, data labelling quality has become one of the most significant issues for AI applications, especially when it requires domain knowledge (e.g. medical image labelling). In addition, there might be noisy labels in practical datasets, which might impair the training process of neural networks. In this work, we propose a semi-supervised algorithm for training data samples with noisy labels by performing selecte…
Diffusion-Based Electrocardiography Noise Quantification via Anomaly Detection
Department of Brain and Cognitive Engineering, Korea University（脑科学与认知工程系，韩国大学）；Interdisciplinary Program in Precision Public Health, Korea University（精准公共卫生交叉计划，韩国大学）；Department of Anesthesiology and Pain Medicine, Kyung Hee University Hospital at Gangdong（麻醉与疼痛医学科，京亨大学医院江dong分院）；Department of Internal Medicine, Seoul National University College of Medicine and Seoul National University Hospital（内科学科，首尔国立大学医学院和首尔国立大学医院）；Department of Biomedical Engineering, Yonsei University（生物医学工程系，延世大学）；Center for Nanoparticle Research, Institute for Basic Science, Seoul（纳米粒子研究中心，基础科学研究所，首尔）；Department of Neurology, Korea University College of Medicine（神经医学科，韩国大学医学院）
In the pregnant mother and her fetus, chronic prenatal stress results in entrainment of the fetal heartbeat by the maternal heartbeat, quantified by the fetal stress index (FSI). Deep learning (DL) is capable of pattern detection in complex medical data with high accuracy in noisy real-life environments, but little is known about DL's utility in non-invasive biometric monitoring during pregnancy. A recently established self-supervised learning (SSL) approach to DL provides emotional recognition from electrocardiogram (ECG). We hypothesized that SSL will identify chronically stressed mother-fet…
In the field of digital signal processing, the function of a filter is to remove unwanted parts of the signal such as random noise that is also undesirable. To remove noise from the speech signal transmission or to extract useful parts of the signal such as the components lying within a certain frequency range, filters are necessary. Filters are broadly used in signal processing and communication systems in applications such as channel equalization, noise reduction, radar, audio processing, speech signal processing, video processing, biomedical signal processing that is noisy ECG, EEG, EMG sig…
