Roman Kalkreuth, Paul Kaufmann
This regularly updated survey provides an overview of public resources that offer medical images and metadata of COVID-19 cases. The purpose of this survey is to simplify the access to open COVID-19 image data resources for all scientists currently working on the coronavirus crisis.
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COVID-19 (Coronavirus disease 2019) has been quickly spreading since its outbreak, impacting financial markets and healthcare systems globally. Countries all around the world have adopted a number of extraordinary steps to restrict the spreading virus, where early COVID-19 diagnosis is essential. Medical images such as X-ray images and Computed Tomography scans are becoming one of the main diagnostic tools to combat COVID-19 with the aid of deep learning-based systems. In this survey, we investigate the main contributions of deep learning applications using medical images in fighting against C…
GPT-4 Vision on Medical Image Classification -- A Case Study on COVID-19 Dataset
本文通过COVID-19数据集案例，研究GPT-4 Vision结合上下文学习在医学图像分类中的诊断增强效果。
Coronavirus disease (COVID-19) is an infectious disease caused by a newly discovered coronavirus. The disease presents with symptoms such as shortness of breath, fever, dry cough, and chronic fatigue, amongst others. Sometimes the symptoms of the disease increase so much they lead to the death of the patients. The disease may be asymptomatic in some patients in the early stages, which can lead to increased transmission of the disease to others. Many studies have tried to use medical imaging for early diagnosis of COVID-19. This study attempts to review papers on automatic methods for medical i…
Deep Learning Models for Classification of COVID-19 Cases by Medical Images
本文比较 DenseNet201、GoogleNet、AlexNet 等深度迁移学习模型与监督学习模型，对 CT、X 光片和心电图等多种医学图像进行 COVID-19 分类，以提升诊断准确性和速度。
The outbreak of novel coronavirus disease (COVID- 19) has claimed millions of lives and has affected all aspects of human life. This paper focuses on the application of deep learning (DL) models to medical imaging and drug discovery for managing COVID-19 disease. In this article, we detail various medical imaging-based studies such as X-rays and computed tomography (CT) images along with DL methods for classifying COVID-19 affected versus pneumonia. The applications of DL techniques to medical images are further described in terms of image localization, segmentation, registration, and classifi…
MIC: Medical Image Classification Using Chest X-ray (COVID-19 and Pneumonia) Dataset with the Help of CNN and Customized CNN
本研究提出定制CNN（CCNN）用于胸部X射线图像分类，在6432张COVID-19和肺炎数据集上达到95.62%验证准确率，优于现有模型，为医学图像分类提供高效方案。
Coronavirus disease 2019 (COVID-19) has infected more than one million individuals all over the world and caused more than 55,000 deaths, as of April 3 in 2020. Radiological findings are important sources of information in guiding the diagnosis and treatment of COVID-19. However, the existing studies on how radiological findings are correlated with COVID-19 are conducted separately by different hospitals, which may be inconsistent or even conflicting due to population bias. To address this problem, we develop natural language processing methods to analyze a large collection of COVID-19 literat…
This paper presents the baseline approach for the organized 2nd Covid-19 Competition, occurring in the framework of the AIMIA Workshop in the European Conference on Computer Vision (ECCV 2022). It presents the COV19-CT-DB database which is annotated for COVID-19 detction, consisting of about 7,700 3-D CT scans. Part of the database consisting of Covid-19 cases is further annotated in terms of four Covid-19 severity conditions. We have split the database and the latter part of it in training, validation and test datasets. The former two datasets are used for training and validation of machine l…
COVID-19 Computer-aided Diagnosis through AI-assisted CT Imaging Analysis: Deploying a Medical AI System
本研究集成并部署了一套含分类与分割组件的COVID-19 CT影像分析AI系统，克服数据、安全等多类挑战，可在云边环境可靠扩展，输出感染概率并提升可解释性，助力医生快速检测与隔离患者。
Empowering Medical Imaging with Artificial Intelligence: A Review of Machine Learning Approaches for the Detection, and Segmentation of COVID-19 Using Radiographic and Tomographic Images
本文综述了利用机器学习对CT和X射线影像进行COVID-19检测、分类与分割的方法，强调其在辅助放射科医生精准诊断和提升效率方面的作用，并展望该技术在医疗领域持续推动疫情管理的潜力。
Medical image classification and segmentation based on deep learning (DL) are emergency research topics for diagnosing variant viruses of the current COVID-19 situation. In COVID-19 computed tomography (CT) images of the lungs, ground glass turbidity is the most common finding that requires specialist diagnosis. Based on this situation, some researchers propose the relevant DL models which can replace professional diagnostic specialists in clinics when lacking expertise. However, although DL methods have a stunning performance in medical image processing, the limited datasets can be a challeng…
The sudden outbreak and uncontrolled spread of COVID-19 disease is one of the most important global problems today. In a short period of time, it has led to the development of many deep neural network models for COVID-19 detection with modules for explainability. In this work, we carry out a systematic analysis of various aspects of proposed models. Our analysis revealed numerous mistakes made at different stages of data acquisition, model development, and explanation construction. In this work, we overview the approaches proposed in the surveyed Machine Learning articles and indicate typical …
COVID-19 pandemic has spread rapidly and caused a shortage of global medical resources. The efficiency of COVID-19 diagnosis has become highly significant. As deep learning and convolutional neural network (CNN) has been widely utilized and been verified in analyzing medical images, it has become a powerful tool for computer-assisted diagnosis. However, there are two most significant challenges in medical image classification with the help of deep learning and neural networks, one of them is the difficulty of acquiring enough samples, which may lead to model overfitting. Privacy concerns mainl…
Fast screening and diagnosis are critical in COVID-19 patient treatment. In addition to the gold standard RT-PCR, radiological imaging like X-ray and CT also works as an important means in patient screening and follow-up. However, due to the excessive number of patients, writing reports becomes a heavy burden for radiologists. To reduce the workload of radiologists, we propose DeltaNet to generate medical reports automatically. Different from typical image captioning approaches that generate reports with an encoder and a decoder, DeltaNet applies a conditional generation process. In particular…
It seems as though progressively more people are in the race to upload content, data, and information online; and hospitals haven't neglected this trend either. Hospitals are now at the forefront for multi-site medical data sharing to provide groundbreaking advancements in the way health records are shared and patients are diagnosed. Sharing of medical data is essential in modern medical research. Yet, as with all data sharing technology, the challenge is to balance improved treatment with protecting patient's personal information. This paper provides a novel split learning algorithm coined th…
Domain adaptation, Explainability & Fairness in AI for Medical Image Analysis: Diagnosis of COVID-19 based on 3-D Chest CT-scans
本文介绍了2024年CVPR研讨会框架下举办的第四届DEF-AI-MIA COV19D竞赛，包含新冠检测与域适应两项挑战，基于COV19-CT-DB胸部CT数据，公布了基线模型及对应性能。
COVID-19 is a novel virus that attacks the upper respiratory tract and the lungs. Its person-to-person transmissibility is considerably rapid and this has caused serious problems in approximately every facet of individuals lives. While some infected individuals may remain completely asymptomatic, others have been frequently witnessed to have mild to severe symptoms. In addition to this, thousands of death cases around the globe indicated that detecting COVID-19 is an urgent demand in the communities. Practically, this is prominently done with the help of screening medical images such as Comput…
Early detection of the coronavirus disease 2019 (COVID-19) helps to treat patients timely and increase the cure rate, thus further suppressing the spread of the disease. In this study, we propose a novel deep learning based detection and similar case recommendation network to help control the epidemic. Our proposed network contains two stages: the first one is a lung region segmentation step and is used to exclude irrelevant factors, and the second is a detection and recommendation stage. Under this framework, in the second stage, we develop a dual-children network (DuCN) based on a pre-traine…
(This paper was submitted as an invited paper to IEEE Reviews in Biomedical Engineering on April 6, 2020.) The pandemic of coronavirus disease 2019 (COVID-19) is spreading all over the world. Medical imaging such as X-ray and computed tomography (CT) plays an essential role in the global fight against COVID-19, whereas the recently emerging artificial intelligence (AI) technologies further strengthen the power of the imaging tools and help medical specialists. We hereby review the rapid responses in the community of medical imaging (empowered by AI) toward COVID-19. For example, AI-empowered i…
Medical health care centers are envisioned as a promising paradigm to handle the massive volume of data of COVID-19 patients using artificial intelligence (AI). Traditionally, AI techniques often require centralized data collection and training the model in a single organization, which is most common weakness due to the privacy and security of raw data communication. To solve this challenging task, we propose a blockchain-based federated learning framework that provides collaborative data training solutions by coordinating multiple hospitals to train and share encrypted federated models withou…
Deep learning has been used to assist in the analysis of medical imaging. One such use is the classification of Computed Tomography (CT) scans when detecting for COVID-19 in subjects. This paper presents Cov3d, a three dimensional convolutional neural network for detecting the presence and severity of COVID19 from chest CT scans. Trained on the COV19-CT-DB dataset with human expert annotations, it achieves a macro f1 score of 0.9476 on the validation set for the task of detecting the presence of COVID19. For the task of classifying the severity of COVID19, it achieves a macro f1 score of 0.755…
In this study, a dataset of X-Ray images from patients with common pneumonia, Covid-19, and normal incidents was utilized for the automatic detection of the Coronavirus. The aim of the study is to evaluate the performance of state-of-the-art Convolutional Neural Network architectures proposed over recent years for medical image classification. Specifically, the procedure called transfer learning was adopted. With transfer learning, the detection of various abnormalities in small medical image datasets is an achievable target, often yielding remarkable results. The dataset utilized in this expe…
This paper describes BIMCV COVID-19+, a large dataset from the Valencian Region Medical ImageBank (BIMCV) containing chest X-ray images CXR (CR, DX) and computed tomography (CT) imaging of COVID-19+ patients along with their radiological findings and locations, pathologies, radiological reports (in Spanish), DICOM metadata, Polymerase chain reaction (PCR), Immunoglobulin G (IgG) and Immunoglobulin M (IgM) diagnostic antibody tests. The findings have been mapped onto standard Unified Medical Language System (UMLS) terminology and cover a wide spectrum of thoracic entities, unlike the considerab…
This review presents a comprehensive study on the role of GANs in addressing the challenges related to COVID-19 data scarcity and diagnosis. It is the first review that summarizes the different GANs methods and the lungs images datasets for COVID-19. It attempts to answer the questions related to applications of GANs, popular GAN architectures, frequently used image modalities, and the availability of source code. This review included 57 full-text studies that reported the use of GANs for different applications in COVID-19 lungs images data. Most of the studies (n=42) used GANs for data augmen…
Coronavirus disease 2019 (COVID-19) is an ongoing global pandemic that has spread rapidly since December 2019. Real-time reverse transcription polymerase chain reaction (rRT-PCR) and chest computed tomography (CT) imaging both play an important role in COVID-19 diagnosis. Chest CT imaging offers the benefits of quick reporting, a low cost, and high sensitivity for the detection of pulmonary infection. Recently, deep-learning-based computer vision methods have demonstrated great promise for use in medical imaging applications, including X-rays, magnetic resonance imaging, and CT imaging. Howeve…
The rapid outbreak of COVID-19 threatens humans life all around the world. Due to insufficient diagnostic infrastructures, developing an accurate, efficient, inexpensive, and quick diagnostic tool is of great importance. As chest radiography, such as chest X-ray (CXR) and CT computed tomography (CT), is a possible way for screening COVID-19, developing an automatic image classification tool is immensely helpful for detecting the patients with COVID-19. To date, researchers have proposed several different screening methods; however, none of them could achieve a reliable and highly sensitive per…
An Evaluation of Lightweight Deep Learning Techniques in Medical Imaging for High Precision COVID-19 Diagnostics
本文评估了基于 MobileNetV2 的轻量级深度学习技术在胸部 X 光和 CT 影像中检测 COVID-19 的性能，证明其在保持与重量级模型相当精度的同时显著降低部署成本与内存需求，适合资源受限的移动床旁检测场景。
MS-DCANet: A Novel Segmentation Network For Multi-Modality COVID-19 Medical Images
针对COVID-19医学图像分割中精度与复杂度难平衡的问题，提出融合Tokenized MLP块、双通道块与Res-ASPP块的MS-DCANet框架，在多模态任务及其他数据集上实现了精度与复杂度的良好权衡。
COVID-19 Pneumonia Diagnosis Using Medical Images: Deep Learning-Based Transfer Learning Approach
本文构建基于 CNN 迁移学习的胸部 X 光与 CT 自动诊断系统，评估多种主流模型，发现 DenseNet121 对 COVID-19 的检测性能最佳且鲁棒可靠。
COVID-19 is a global pandemic, and detecting them is a momentous task for medical professionals today due to its rapid mutations. Current methods of examining chest X-rays and CT scan requires profound knowledge and are time consuming, which suggests that it shrinks the precious time of medical practitioners when people's lives are at stake. This study tries to assist this process by achieving state-of-the-art performance in classifying chest X-rays by fine-tuning Vision Transformer(ViT). The proposed approach uses pretrained models, fine-tuned for detecting the presence of COVID-19 disease on…
Early and reliable COVID-19 diagnosis based on chest 3-D CT scans can assist medical specialists in vital circumstances. Deep learning methodologies constitute a main approach for chest CT scan analysis and disease prediction. However, large annotated databases are necessary for developing deep learning models that are able to provide COVID-19 diagnosis across various medical environments in different countries. Due to privacy issues, publicly available COVID-19 CT datasets are highly difficult to obtain, which hinders the research and development of AI-enabled diagnosis methods of COVID-19 ba…
Machine learning requires a large volume of sample data, especially when it is used in high-accuracy medical applications. However, patient records are one of the most sensitive private information that is not usually shared among institutes. This paper presents spatio-temporal split learning, a distributed deep neural network framework, which is a turning point in allowing collaboration among privacy-sensitive organizations. Our spatio-temporal split learning presents how distributed machine learning can be efficiently conducted with minimal privacy concerns. The proposed split learning consi…
A newly identified coronavirus disease called COVID-19 mainly affects the human respiratory system. COVID-19 is an infectious disease caused by a virus originating in Wuhan, China, in December 2019. Early diagnosis is the primary challenge of health care providers. In the earlier stage, medical organizations were dazzled because there were no proper health aids or medicine to detect a COVID-19. A new diagnostic tool RT-PCR (Reverse Transcription Polymerase Chain Reaction), was introduced. It collects swab specimens from the patient's nose or throat, where the COVID-19 virus gathers. This metho…
Chest X-ray is the first imaging technique that plays an important role in the diagnosis of COVID-19 disease. Due to the high availability of large-scale annotated image datasets, great success has been achieved using convolutional neural networks (CNNs) for image recognition and classification. However, due to the limited availability of annotated medical images, the classification of medical images remains the biggest challenge in medical diagnosis. Thanks to transfer learning, an effective mechanism that can provide a promising solution by transferring knowledge from generic object recognit…
Improving automated analysis of medical imaging will provide clinicians more options in providing care for patients. The 2023 AI-enabled Medical Image Analysis Workshop and Covid-19 Diagnosis Competition (AI-MIA-COV19D) provides an opportunity to test and refine machine learning methods for detecting the presence and severity of COVID-19 in patients from CT scans. This paper presents version 2 of Cov3d, a deep learning model submitted in the 2022 competition. The model has been improved through a preprocessing step which segments the lungs in the CT scan and crops the input to this region. It …
The novel Coronavirus disease, COVID-19, has rapidly and abruptly changed the world as we knew in 2020. It becomes the most unprecedent challenge to analytic epidemiology in general and signal processing theories in specific. Given its high contingency nature and adverse effects across the world, it is important to develop efficient processing/learning models to overcome this pandemic and be prepared for potential future ones. In this regard, medical imaging plays an important role for the management of COVID-19. Human-centered interpretation of medical images is, however, tedious and can be s…
With the spread of COVID-19 over the world, the need arose for fast and precise automatic triage mechanisms to decelerate the spread of the disease by reducing human efforts e.g. for image-based diagnosis. Although the literature has shown promising efforts in this direction, reported results do not consider the variability of CT scans acquired under varying circumstances, thus rendering resulting models unfit for use on data acquired using e.g. different scanner technologies. While COVID-19 diagnosis can now be done efficiently using PCR tests, this use case exemplifies the need for a methodo…
Multimodal Marvels of Deep Learning in Medical Diagnosis: A Comprehensive Review of COVID-19 Detection
本研究以COVID-19为例，系统综述了多模态深度学习在医学诊断中的应用，比较了11种模型，发现MobileNet在图像和语音数据上准确率最高，BiGRU在文本分类上最优。
Explainable Knowledge Distillation for Efficient Medical Image Classification
本文提出利用VGG19和轻量级Vision Transformer作为教师模型，通过混合监督知识蒸馏训练OFA-595派生的紧凑学生模型，在COVID-19和肺癌X光分类中实现高效且可解释的医学图像诊断。
Ensembling and Test Augmentation for Covid-19 Detection and Covid-19 Domain Adaptation from 3D CT-Scans
本文针对COV19D竞赛，提出基于PDAtt-Unet分割和多种3D CNN骨干网络集成及测试增强的方法，用于新冠肺炎检测与领域自适应，相比基线F1分数提升14%。
MEDNC: Multi-ensemble deep neural network for COVID-19 diagnosis
本文提出受迁移学习启发的多集成深度神经网络MEDNC，利用CT图像自动诊断COVID-19，并在多个医学图像数据集上验证其高准确率与广泛适用性。
This paper describes the initial COVID-19 open image data collection. It was created by assembling medical images from websites and publications and currently contains 123 frontal view X-rays.
Interpreting chest radiograph, a.ka. chest x-ray, images is a necessary and crucial diagnostic tool used by medical professionals to detect and identify many diseases that may plague a patient. Although the images themselves contain a wealth of valuable information, their usefulness may be limited by how well they are interpreted, especially when the reviewing radiologist may be fatigued or when or an experienced radiologist is unavailable. Research in the use of deep learning models to analyze chest radiographs yielded impressive results where, in some instances, the models outperformed pract…
Due to the limited availability and high cost of the reverse transcription-polymerase chain reaction (RT-PCR) test, many studies have proposed machine learning techniques for detecting COVID-19 from medical imaging. The purpose of this study is to systematically review, assess, and synthesize research articles that have used different machine learning techniques to detect and diagnose COVID-19 from chest X-ray and CT scan images. A structured literature search was conducted in the relevant bibliographic databases to ensure that the survey solely centered on reproducible and high-quality resear…
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